* feat: impl scripts table and /execute restful api
* fix: test failures
* fix: test failures
* feat: impl /run_script API
* refactor: rename run_script api to run-script and test script manager
* fix: remove println
* refactor: error mod
* refactor: by CR comments
* feat: rebase develop and change timestamp/gmt_crated/gmt_modified type to timestamp
* refactor: use assert_eq instread of assert
* doc: fix comment in Script#execute function
* wip: impl timestamp data type
* add timestamp vectors
* adapt to recent changes to vector module
* fix all unit test
* rebase develop
* fix slice
* change default time unit to millisecond
* add more tests
* fix some CR comments
* fix some CR comments
* fix clippy
* fix some cr comments
* fix some CR comments
* fix some CR comments
* remove time unit in LogicalTypeId::Timestamp
* feat: implement alter table
* Currently we have no plans to support altering the primary keys (maybe never), so removed the related codes.
* make `alter` a trait function in table
* address other CR comments
* cleanup
* rebase develop
* resolve code review comments
Co-authored-by: luofucong <luofucong@greptime.com>
* feat: improve try_into_vector function
* Impl python mod and PyVector to execute script
* add AsSeq(BUT not IMPL)
* add&test pythonic_index, add into_py_obj(UNTEST)
* add into_datatypes_value(UNTEST)
* inplace setitem_by_index unsupport
* still struggle with testing AsSeq
* actually pyimpl AsSeq&AsMap
* add slice for PyVector
* improve visualibility for testing
* adjust for clippy
* add assert for test_execute_script
* add type anno in test
* feat: basic support for PyVector's operator with scalar (#64)
* feat: memory size of vector (#53)
* feat: improve try_into_vector function
* feat: impl memory_size function for vectors
* fix: forgot memory_size assertion in null vector test
* feat: use LargeUtf8 instead of utf8 for string, and rename LargeBianryArray to BinaryArray
* feat: memory_size only calculates heap size
* feat: impl bytes_allocated for memtable (#55)
* add init and constr
* rename type cast and add test
* fix bug in pyobj_to_val
* add default cast when no type specifed
* add basic add/sub/mul for array and scalar(value)
* cargo clippy
* comment out some println
* stricter clippy
* style: cargo fmt
* fix: string&bool support in val2pyobj & back
* style: remove println in test
* style: rm println in test mod in python.rs
* refactor: use wrap_index instead of pythonic_index
* refactor: right op in scalar_arith_op
* fix: stronger type& better test
* style: remove println
* fix: scalar sign/unsigned cast
* feat: improve try_into_vector function
* Impl python mod and PyVector to execute script
* add AsSeq(BUT not IMPL)
* add&test pythonic_index, add into_py_obj(UNTEST)
* add into_datatypes_value(UNTEST)
* inplace setitem_by_index unsupport
* still struggle with testing AsSeq
* actually pyimpl AsSeq&AsMap
* add slice for PyVector
* improve visualibility for testing
* adjust for clippy
* add assert for test_execute_script
* add type anno in test
* add init and constr
* rename type cast and add test
* fix bug in pyobj_to_val
* add default cast when no type specifed
* add basic add/sub/mul for array and scalar(value)
* cargo clippy
* comment out some println
* stricter clippy
* style: cargo fmt
* fix: string&bool support in val2pyobj & back
* style: remove println in test
* style: rm println in test mod in python.rs
* refactor: use wrap_index instead of pythonic_index
* refactor: right op in scalar_arith_op
* fix: stronger type& better test
* style: remove println
* fix: scalar sign/unsigned cast
* style: remove instead of comment out
* style: remove more comment out
* feat: support scalar div vector
* style: cargo fmt
* style: typo
* refactor: rename to correct var name
* refactor: directly use arrow2::array
* refactor: mv rsub&rdiv's op into a function
* test: add python expr test
* test: add test for PyList
* refactor: tweak order of arithmetics in rtruediv
* style: remove some `use`
* refactor: move `is_instance` to mod
* refactor: move fn to mod& move `use` to head
* style: cargo fmt
* fix: correct signed/unsigned cast
* refactor: wrap err msg in another fn
* style: cargo fmt
* style: remove ok_or_else for readability
* feat: add coprocessor fn(not yet impl)
* refactor: change back to wrapped_at
* fix: update Cargo.lock
* fix: update rustc version
* Update Rust Toolchain to nightly-2022-07-14
* feat: derive Eq when possible
* style: use `from` to avoid `needless_borrow` lint
Co-authored-by: dennis zhuang <killme2008@gmail.com>
* feat: python coprocessor with type annotation (#96)
* feat: add coprocessor fn
Signed-off-by: discord9 <zglzy29yzdk@gmail.com>
* feat: cast args into PyVector
* feat: uncomplete coprocessor
* feat: erase decorator in python ast
* feat: strip decorator in ast
* fix: change parse to `Interactive`
* style: format Cargo.toml
* feat: make coprocessor actually work
* feat: move coprocessor fn out of test mod
* feat: add error handling
* style: add some comment
* feat: rm type annotation
* feat: add type annotation support
* style: move compile method to vm closure
* feat: annotation for nullable
* feat: type coercion cast in annotation
* feat: actually cast(NOT TESTED)
* fix: allow single into(type)
* refactor: extract parse_type from parser
* style: cargo fmt
* feat: change to Expr to preserve location info
* feat: add CoprParse to deal parse check error
* style: add type anno doc for coprocessor
* test: add some test
* feat: add underscore as any type in annotation
* test: add parse& runtime testcases
* style: rm dbg! remnant
* style: cargo fmt
* feat: add more error prompt info
* style: cargo fmt
* style: add doc tests' missing `use`
* fix: doc test for coprocessor
* style: cargo fmt
* fix: add missing `use` for `cargo test --doc`
* refactor: according to reviews
* refactor: more tweaks according to reviews
* refactor: merge match arm
* refactor: move into different files(UNCOMPLELTE)
* refactor: split parse_copr into more function
* refactor: split `exec_coprocessor` to more fn
* style: cargo fmt
* feat: print Py Exceptions in String
* feat: error handling conform standards
* test: fix test_coprocessor
* feat: remove `into` in python
* test: remove all `into` in python test
* style: update comment
* refactor: move strip compile fn to impl Copr
* refactor: move `gen_schema` to impl copr
* refactor: move `check_cast_type` to impl copr
* refactor: if let to match
* style: cargo fmt
* refactor: better parse of keyword arg list
* style: cargo fmt
* refactor: some error handling(UNCOMPLETE)
* refactor: error handling to general Error type
* refactor: rm some Vec::new()
* test: modify all tests to ok
* style: reorder item
* refactor: fetch using iter
* style: cargo fmt
* style: fmt macro by hand
* refactor: rename InnerError to Error
* test: use ron to write test
* test: add test for exec_copr
* refactor: add parse_bin_op
* feat: add check_anno
* refactor: add some checker function
* refactor: exec_copr into smaller func
* style: add some comment
* refactor: add check for bin_op
* refactor: rm useless Result
* style: add pretty print for error with location
* feat: more info for pretty print
* refactor: mv pretty print to error.rs
* refactor: rm execute_script
* feat: add pretty print
* feat: add constant column support
* test: add test for constant column
* feat: add pretty print exec fn
* style: cargo fmt
* feat: add macro to chain call `.fail()`
* style: update doc for constant columns
* style: add lint to allow print in test fn
* style: cargo fmt
* docs: update some comment
* fix: ignore doctest for now
* refactor: check_bin_op
* refactor: parse_in_op, check ret anno fn
* refactor: rm check_decorator
* doc: loc add newline explain
* style: cargo fmt
* refactor: use Helper::try_into_vec in try_into_vec
* style: cargo fmt
* test: add ret anno test
* style: cargo fmt
* test: add name for .ron tests for better debug
* test: print emoji in test
* style: rm some comment out line
* style: rename `into` to `try_into` fn
* style: cargo fmt
* refactor: rm unuse serialize derive
* fix: pretty print out of bound fix
* fix: rm some space in pretty print
* style: cargo fmt
* test: not even a python fn def
* style: cargo fmt
* fix: pretty print off by one space
* fix: allow `eprint` in clippy lint
* fix: compile error after rebase develop
* feat: port 35 functions from DataFusion to Python Coprocessor (#137)
* refactor: `cargo clippy`
* feat: create a module
* style: cargo fmt
* feat: bind `pow()` function(UNTEST)
* test: add test for udf mod
* style: allow part eq not eq for gen code
* style: allow print in test lint
* feat: use PyObjectRef to handle more types
* feat: add cargo feature for udf modules
* style: rename feature to udf-builtins
* refactor: move away from mod.rs
* feat: add all_to_f64 cast fn
* feat: add bind_math_fn macro
* feat: add all simple math UDF
* feat: add `random(len)` math fn
* feat: port `avg()` from datafusion
* refactor: add `eval_aggr_fn`
* feat: add bind_aggr_fn macro
* doc: add comment for args of macro
* feat: add all UDAF from datafusion
* refactor: extract test to separate file
* style: cargo fmt
* test: add incomplete test
* test: add .ron test fn
* feat: support scalar::list
* doc: add comments
* style: rename VagueFloat/Int to LenFloat/IntVec
* test: for all fn(expect approx_median)
* test: better print
* doc: add comment for FloatWithError
* refactor: move test.rs out of builtins/
* style: cargo fmt
* doc: add comment for .ron file
* doc: update some comments
* test: EPS=1e-12 for float eq
* test: use f64::EPSILON instead
* test: change to 2*EPS
* test: cache interpreter for fast testing
* doc: remove a TODO which is done
* test: refacto to_py_obj fn
* fix: pow fn
* doc: add a TODO for type_.rs
* test: use new_int/float in test serde
* test: for str case
* style: cargo fmt
* feat: cast PyList to ScalarValue::List
* test: cast scalar to py obj and back
* feat: cast to PyList
* test: cast from PyList
* test: nested PyVector unsupported
* doc: remove unrunable doctest
* test: replace PartialEq with impl just_as_expect
* doc: add name for discord9's TODO
* refactor: cahnge to vm.ctx.new_** instead
* doc: complete a TODO
* refactor: is_instance and other minor problem
* refactor: remove type_::is_instance
* style: cargo fmt
* feat: rename to `greptime_builtin`
* fix: error handling for PyList datatype
* style: fix clippy warning
* test: for PyList
* feat: Python Coprocessor MVP (#180)
* feat: add get_arrow_op
* feat: add comparsion op(UNTESTED)
* doc: explain why no rich compare
* refactor: py_str2str&parse_keywords
* feat: add DecoratorArgs
* refactor: parse_keywords ret Deco Args
* style: remove unused
* doc: add todo
* style: remove some unused fn
* doc: add comment for copr's field
* feat: add copr_engine module
* refactor: move to `script` crate
* style: clean up cargo.toml
* feat: add query engine for copr engine
* refactor: deco args into separate struct
* test: update corrsponding test
* feat: async coprocessor engine
* refactor: add `exec_parsed` fn
* feat: sync version of coprocessor(UNTEST)
* refactor: remove useless lifetime
* feat: new type for async stream record batch
* merge: from PR#137 add py builtins
* toolchain: update rustc to nightly-08-16
* feat: add `exec_with_cached_vm` fn(Can't compile)
* toolchain: revert to 07-14
* fix: `exec_with_cached_vm`
* fix: allow vector[_] in params
* style: cargo fmt
* doc: update comment on `_`&`_|None`
* fix: allow import&ignore type anno is ok
* feat: allow ignore return types
* refsctor: remove unused py files in functions/
* style: fmt&clippy
* refactor: python modules (#186)
* refactor: move common/script to script
* fix: clippy warnings and refactor python modules
* refactor: remove modules mod rename tests mod
* feat: adds Script and ScriptEngine trait, then impl PyScript/PyScriptEngine
* refactor: remove pub use some functions in script
* refactor: python error mod
* refactor: coprocessor and vector
* feat: adds engine test and greptime.vector function to create vector from iterable
* fix: adds a blank line to cargo file end
* fix: compile error after rebase develop
* feat: script endpoint for http server (#206)
* feat: impl /scripts API for http server
* feat: adds http api version
* test: add test for scripts handler and endpoint
* feat: python side mock module and more builtin functions (#209)
* feat: add python side module(for both mock and real upload script)
* style: add *.pyc to gitignore
* feat: move copr decorator(in .py) to greptime.py
* doc: update comment for `datetime`&`mock_tester`&gitignore
* feat: `filter()` a array with bool array(UNTESTED)
* feat: `prev()`ious elem in array ret as new array(UNTEST)
* feat: `datetime()` parse date time string and ret integer(UNTEST)
* fix: add missing return&fmt
* fix: allow f32 cast to PyFloat
* fix: `datetime()`'s last token now parsed
* test: `calc_rvs` now can run with builtin module
* feat: allow rich compare which ret bool array
* feat: logic and(`&`) for bool array
* style: cargo fmt
* feat: index PyVector by bool array
* feat: alias `ln` as `log` in builtin modules
* feat: logic or(`|`)¬( `~`) for bool array
* feat: add `post` for @copr in py side mod
* feat: change datetime return to i64
* feat: py side mod `post` script to given address
* fix: add `engine` field in `post` in py side mod
* refactor: use `ConstantVector` in `pow()` builtin
* fix: prev ret err for zero array
* doc: rm comment out code
* test: incomplete pyside mod test case
* git: ignore all __pycache__
* style: fmt&clippy
* refactor: split py side module into exmaple&gptime
* feat: init_table in py using `v1/sql` api
* feat: calc_rvs now run both locally and remote
* doc: add doc for how to run it
* fix: comment out start server code in test
* fix: clippy warnings
* fix: http test url
* fix: some CR problems
* fix: some CR problems
* refactor: script executor for instance
* refactor: remove engine param in execute_script
* chore: Remove unnecessary allow attributes
Co-authored-by: Dennis Zhuang <killme2008@gmail.com>
Co-authored-by: Discord9 <discord9@163.com>
Co-authored-by: discord9 <zglzy29yzdk@gmail.com>
Co-authored-by: discord9 <55937128+discord9@users.noreply.github.com>
* wip: add Date type and value
* fix some cr comments
* impl Date values
* finish date type
* optimize Date value serialization
* add some tests
* fix some cr comments
* add some more test
* address PR comments
address PR comments
use 3306 for mysql server's default port
upgrade metric to version 0.20
move crate "servers" out of "common"
make mysql io threads count configurable in config file
add snafu backtrace for errors with source
use common-server error for mysql server
add test for grpc server
refactor testing codes
fix rustfmt check
start mysql server in datanode
move grpc server codes from datanode to common-servers
feat: unify servers
* rebase develop and resolve conflicts
* remove an unnecessary todo
Co-authored-by: luofucong <luofucong@greptime.com>
* catalog manager allocates table id
* rebase develop
* add some tests
* add some more test
* fix some cr comments
* insert into system catalog
* use slice pattern to simplify code
* add optional dependencies
* add sql-to-request test
* successfully recover
* fix unit tests
* rebase develop
* add some tests
* fix some cr comments
* fix some cr comments
* add a lock to CatalogManager
* feat: add gmt_created and gmt_modified columns to system catalog table
* SelectExpr: change to oneof expr
* Convert between Vec<u8> and SelectResult
* Chore: use encode_to_vec and decode, instead of encode_length_delimited_to_vec and decode_length_delimited
* Chore: move bitset into separate file
* Grpc select impl
* feat: impl TableManifest and refactor table engine, object store etc.
* feat: persist table metadata when creating it
* fix: remove unused file src/storage/src/manifest/impl.rs
* feat: impl recover table info from manifest
* test: add open table test and table manifest test
* fix: resolve CR problems
* fix: compile error and remove region id
* doc: describe parent_dir
* fix: address CR problems
* fix: typo
* Revert "fix: compile error and remove region id"
This reverts commit c14c250f8a.
* fix: compile error and generate region id by table_id and region number
Implement catalog manager that provides a vision of all existing tables while instance start. Current implementation is based on local table engine, all catalog info is stored in an system catalog table.
* add pwrite
* write
* fix write
* error handling in write thread
* wrap some LogFile field to state field
* remove some unwraps
* reStructure some code
* implement file chunk
* composite chunk decode
* add test for chunk stream
* fix buffer test
* remove some useless code
* add test for read_at and file_chunk_stream
* use bounded channel to implement back pressure
* reimplement entry read and decoding
* add some doc
* clean some code
* use Sender::blocking_send to replace manually spawn
* support synchronous file chunk stream
* remove useless clone
* remove set_offset from Entry trait
* cr: fix some comments
* fix: add peek methods for Buffer
* add test for read at the middle of file
* fix some minor issues on comments
* rebase on to develop
* add peek_to_slice and read_to_slice
* initialize file chunk on heap
* fix some comments in CR
* respect entry id set outside LogStore
* fix unit test
* Update src/log-store/src/fs/file.rs
Co-authored-by: evenyag <realevenyag@gmail.com>
* fix some cr comments
Co-authored-by: evenyag <realevenyag@gmail.com>
* feat: protobuf codec
* chore: minor fix
* chore: beatify the macro code
* chore: minor fix
* chore: by cr
* chore: by cr and impl wal with proto
* bugfix: invalid num_rows for multi put_data in mutations
Co-authored-by: jiachun <jiachun_fjc@163.com>
* feat: memtable backed by DataFusion to ease testing
* move test utility codes out of src folder
* Implement our own MemTable because DataFusion's MemTable does not support limit; and replace the original testing numbers table.
* fix: address PR comments
* fix: "testutil" -> "test-util"
* roll back "NumbersTable"
Co-authored-by: luofucong <luofucong@greptime.com>
* fix: Fix write stall blocks flush applying version
refactor: Use store config to help constructing Region
chore: Address CR comments
* feat: adds manifest protocol supporting and refactor region metadata protocol
feat: ignore sqlparser log
refactor: PREV_VERSION_KEY constant
refactor: minor change for checking readable/writable
fix: address CR problems
refactor: use binary literal
Co-authored-by: Dennis Zhuang <killme2008@gmail.com>
* feat: UDAF implementation backed by DataFusion.
Directly Transplant DataFusion's UDAF related structs, traits and functions, like `AggregateUDF`, `Accumulator` or `create_udaf` etc.
Implement median UDAF on top of it and used in unit testing.
Refs: #61
* feat: UDAF made generically
Refs: #61
* fix: cargo fmt
* fix: use prelude
* fix: uniform the name
* fix: move maybe commonly used functions together
* fix: make comments more clear
* fix: resolve conversations in CR
* fix: store input types in AccumulatorCreator, and use ScalarVector's iterator
* feat: introducing List value and List datatype
* refactor: use ArcSwap instead of Mutext
* refactor: shorten some namings
* refactor: move median UDAF out of tests
* refactor: rename
* feat: aggregate function registry
* fix: make `Value` satisfy ordering again
* fix: clippy warnings
* doc: add "how to write aggregate function"
* fix: address PR comments
* fix: trying to get rid of unwraps
Co-authored-by: luofucong <luofucong@greptime.com>
* move interp from test to numpy
* move interp from test to numpy
* move interp from test to numpy
* move interp from test to numpy
* move interp from test to numpy
* feat: add grpc impl
* feat: add grpc server
* some ut
* verson format: a.b
* code style
* admin request/response
* by cr
* admin api
* by cr
* chore: by cr
* chore: by cr
* feat: add buffer abstraction and rewrite entry encode/decode process
* add some tests
* remove pad.rst
* fix some comments
* fix comments
* remove mmap mod
* feat: Bytes type implementation switch to bytes::Bytes
* fix: use Bytes::from(String) and Bytes::from(Vec<u8>)
* feat: add new method to Entry trait
* feat: impl scanning data from storage for MitoTable
* adds test mod to setup table engine test
* fix: comment error
* fix: boyan -> dennis in todo comments
* fix: remove necessary send in BatchIteratorPtr
* Impl TableEngine, bridge to storage
* Impl sql handler to process insert sql
* fix: minor changes and typo
* test: add datanode test
* test: add table-engine test
* fix: code style
* refactor: split out insert mod from sql and minor changes by CR
* refactor: replace with_context with context
* add log store impl
* add some test
* delete failing test
* fix: concurrent close issue
* feat: use arcswap to replace unsafe AtomicPtr
* fix: use lock to protect rolling procedure.
fix: use try_recv to replace poll_recv on appender task.
* chores: 1. use direct tmp dir instead of creating TempDir instance; 2. inline some short function; 3. rename some structs; 4. optimize namespace to arc wrapper inner struct.
* chore(store-api): Fix typo in region comments
* feat(storage): Init storage crate
* feat(store-api): Make some method async
* feat(storage): Blank StorageEngine implementation
* feat(storage): StorageEngine returns owned SchemaRef
* feat: pub use arrow in datatypes
* feat(store-api): Implement RegionMetadata
* feat(storage): Impl create region in memory.
* chore(object-store): Format cargo toml
* chore(storage): Log on region created
* feat: Impl CowCell
* feat: Store id to cf meta mapping
* refactor: Refactor version and rename it to VersionControl
* feat: Impl write batch for put, refactor column family
* feat(storage): Skeleton of writing to memtable
* refactor(storage): MemTable returns MemTableSchema
* feat: Add ColumnSchema and conversion between schema and arrow's schema
* feat: Validate put data
* feat: Valid schema of write batch
* feat: insert memtable WIP
* feat: Impl Inserter for memtable
* feat(datatypes): Implement Eq/Ord for Value
feat: Implement Ord/Eq for Bytes/StringBytes and Deref for Bytes
test: Test Value::from()
* feat: Define BTreeMemTable
* Fix: Rename get/get_unchecked to try_get/get and fix get not consider null.
* feat: Impl BTreeMemTable::write()
* refactor: Remove useless ColumnFamilyHandle now
* chore: Clean comment
* feat(common): Add from `String/&str/Vec<u8>/&[u8]` for Value
* test(storage): Add tests for WriteBatch
* chore: Fix clippy
* feat: Add builder for RowKey/ColumnFamilyDescriptor
* test: Add test for metadata
* chore: Fix clippy
* test: Add test for region and engine
* chore: Fix clippy
* chore: Address CR comment
* feat: adds scalars mod and enhance vectors
* temp commit
* fix compile error
* Impl pow function with new udf framework
* Adds common-function crate and impl scalars function
* fix: remove used code
* test: adds test for function crate and refactor vectors
* fix: fmt style
* feat: impl numpy.clip function
* feat: improve clip function returning int64 type when arguments do not have float type
* feat: adds more test for vectors
* feat: adds replicate method test for primitive vector
* fix: by code review
* feat: clip function returns uint64 when all arguments type are unsigned
* refactor: improve vectors#only_null
* fix: clippy warning
* fix: clippy warning
* fix: clip should return float64 when arguments have both signed and unsigned types
