* fix: alter table update table column default
* fix: fuzz test also cast default value
* chore: more testcase
* test: non-zero value
* refactor: per review
* tests: unexpected alter result(WIP on fix)
* ub
* ub more
* test: update sqlness
* - **Refactor `RegionFilePathFactory` to `RegionFilePathProvider`:** Updated references and implementations in `access_layer.rs`, `write_cache.rs`, and related test files to use the new struct name.
- **Add `max_file_size` support in compaction:** Introduced `max_file_size` option in `PickerOutput`, `SerializedPickerOutput`, and `WriteOptions` in `compactor.rs`, `picker.rs`, `twcs.rs`, and `window.rs`.
- **Enhance Parquet writing logic:** Modified `parquet.rs` and `parquet/writer.rs` to support optional `max_file_size` and added a test case `test_write_multiple_files` to verify writing multiple files based on size constraints.
**Refactor Parquet Writer Initialization and File Handling**
- Updated `ParquetWriter` in `writer.rs` to handle `current_indexer` as an `Option`, allowing for more flexible initialization and management.
- Introduced `finish_current_file` method to encapsulate logic for completing and transitioning between SST files, improving code clarity and maintainability.
- Enhanced error handling and logging with `debug` statements for better traceability during file operations.
- **Removed Output Size Enforcement in `twcs.rs`:**
- Deleted the `enforce_max_output_size` function and related logic to simplify compaction input handling.
- **Added Max File Size Option in `parquet.rs`:**
- Introduced `max_file_size` in `WriteOptions` to control the maximum size of output files.
- **Refactored Indexer Management in `parquet/writer.rs`:**
- Changed `current_indexer` from an `Option` to a direct `Indexer` type.
- Implemented `roll_to_next_file` to handle file transitions when exceeding `max_file_size`.
- Simplified indexer initialization and management logic.
- **Refactored SST File Handling**:
- Introduced `FilePathProvider` trait and its implementations (`WriteCachePathProvider`, `RegionFilePathFactory`) to manage SST and index file paths.
- Updated `AccessLayer`, `WriteCache`, and `ParquetWriter` to use `FilePathProvider` for path management.
- Modified `SstWriteRequest` and `SstUploadRequest` to use path providers instead of direct paths.
- Files affected: `access_layer.rs`, `write_cache.rs`, `parquet.rs`, `writer.rs`.
- **Enhanced Indexer Management**:
- Replaced `IndexerBuilder` with `IndexerBuilderImpl` and made it async to support dynamic indexer creation.
- Updated `ParquetWriter` to handle multiple indexers and file IDs.
- Files affected: `index.rs`, `parquet.rs`, `writer.rs`.
- **Removed Redundant File ID Handling**:
- Removed `file_id` from `SstWriteRequest` and `CompactionOutput`.
- Updated related logic to dynamically generate file IDs where necessary.
- Files affected: `compaction.rs`, `flush.rs`, `picker.rs`, `twcs.rs`, `window.rs`.
- **Test Adjustments**:
- Updated tests to align with new path and indexer management.
- Introduced `FixedPathProvider` and `NoopIndexBuilder` for testing purposes.
- Files affected: `sst_util.rs`, `version_util.rs`, `parquet.rs`.
* chore: rebase main
* feat/multiple-compaction-output:
### Add Benchmarking and Refactor Compaction Logic
- **Benchmarking**: Added a new benchmark `run_bench` in `Cargo.toml` and implemented benchmarks in `benches/run_bench.rs` using Criterion for `find_sorted_runs` and `reduce_runs` functions.
- **Compaction Module Enhancements**:
- Made `run.rs` public and refactored the `Ranged` and `Item` traits to be public.
- Simplified the logic in `find_sorted_runs` and `reduce_runs` by removing `MergeItems` and related functions.
- Introduced `find_overlapping_items` for identifying overlapping items.
- **Code Cleanup**: Removed redundant code and tests related to `MergeItems` in `run.rs`.
* feat/multiple-compaction-output:
### Enhance Compaction Logic and Add Benchmarks
- **Compaction Logic Improvements**:
- Updated `reduce_runs` function in `src/mito2/src/compaction/run.rs` to remove the target parameter and improve the logic for selecting files to merge based on minimum penalty.
- Enhanced `find_overlapping_items` to handle unsorted inputs and improve overlap detection efficiency.
- **Benchmark Enhancements**:
- Added `bench_find_overlapping_items` in `src/mito2/benches/run_bench.rs` to benchmark the new `find_overlapping_items` function.
- Extended existing benchmarks to include larger data sizes.
- **Testing Enhancements**:
- Updated tests in `src/mito2/src/compaction/run.rs` to reflect changes in `reduce_runs` and added new tests for `find_overlapping_items`.
- **Logging and Debugging**:
- Improved logging in `src/mito2/src/compaction/twcs.rs` to provide more detailed information about compaction decisions.
* feat/multiple-compaction-output:
### Refactor and Enhance Compaction Logic
- **Refactor `find_overlapping_items` Function**: Changed the function signature to accept slices instead of mutable vectors in `run.rs`.
- **Rename and Update Struct Fields**: Renamed `penalty` to `size` in `SortedRun` struct and updated related logic in `run.rs`.
- **Enhance `reduce_runs` Function**: Improved logic to sort runs by size and limit probe runs to 100 in `run.rs`.
- **Add `merge_seq_files` Function**: Introduced a new function `merge_seq_files` in `run.rs` for merging sequential files.
- **Modify `TwcsPicker` Logic**: Updated the compaction logic to use `merge_seq_files` when only one run is found in `twcs.rs`.
- **Remove `enforce_file_num` Function**: Deleted the `enforce_file_num` function and its related test cases in `twcs.rs`.
* feat/multiple-compaction-output:
### Enhance Compaction Logic and Testing
- **Add `merge_seq_files` Functionality**: Implemented the `merge_seq_files` function in `run.rs` to optimize file merging based on scoring systems. Updated
benchmarks in `run_bench.rs` to include `bench_merge_seq_files`.
- **Improve Compaction Strategy in `twcs.rs`**: Modified the compaction logic to handle file merging more effectively, considering file size and overlap.
- **Update Tests**: Enhanced test coverage in `compaction_test.rs` and `append_mode_test.rs` to validate new compaction logic and file merging strategies.
- **Remove Unused Function**: Deleted `new_file_handles` from `test_util.rs` as it was no longer needed.
* feat/multiple-compaction-output:
### Refactor TWCS Compaction Options
- **Refactor Compaction Logic**: Simplified the TWCS compaction logic by replacing multiple parameters (`max_active_window_runs`, `max_active_window_files`, `max_inactive_window_runs`, `max_inactive_window_files`) with a single `trigger_file_num` parameter in `picker.rs`, `twcs.rs`, and `options.rs`.
- **Update Tests**: Adjusted test cases to reflect the new compaction logic in `append_mode_test.rs`, `compaction_test.rs`, `filter_deleted_test.rs`, `merge_mode_test.rs`, and various test files under `tests/cases`.
- **Modify Engine Options**: Updated engine option keys to use `trigger_file_num` in `mito_engine_options.rs` and `region_request.rs`.
- **Fuzz Testing**: Updated fuzz test generators and translators to accommodate the new compaction parameter in `alter_expr.rs` and related files.
This refactor aims to streamline the compaction configuration by reducing the number of parameters and simplifying the codebase.
* chore: add trailing space
* fix license header
* feat/revise-compaction-picker:
**Limit File Processing and Optimize Merge Logic in `run.rs`**
- Introduced a limit to process a maximum of 100 files in `merge_seq_files` to control time complexity.
- Adjusted logic to calculate `target_size` and iterate over files using the limited set of files.
- Updated scoring calculations to use the limited file set, ensuring efficient file merging.
* feat/revise-compaction-picker:
### Add Compaction Metrics and Remove Debug Logging
- **Compaction Metrics**: Introduced new histograms `COMPACTION_INPUT_BYTES` and `COMPACTION_OUTPUT_BYTES` to track compaction input and output file sizes in `metrics.rs`. Updated `compactor.rs` to observe these metrics during the compaction process.
- **Logging Cleanup**: Removed debug logging of file ranges during the merge process in `twcs.rs`.
* feat/revise-compaction-picker:
## Enhance Compaction Logic and Metrics
- **Compaction Logic Improvements**:
- Added methods `input_file_size` and `output_file_size` to `MergeOutput` in `compactor.rs` to streamline file size calculations.
- Updated `Compactor` implementation to use these methods for metrics tracking.
- Modified `Ranged` trait logic in `run.rs` to improve range comparison.
- Enhanced test cases in `run.rs` to reflect changes in compaction logic.
- **Metrics Enhancements**:
- Changed `COMPACTION_INPUT_BYTES` and `COMPACTION_OUTPUT_BYTES` from histograms to counters in `metrics.rs` for better performance tracking.
- **Debugging and Logging**:
- Added detailed logging for compaction pick results in `twcs.rs`.
- Implemented custom `Debug` trait for `FileMeta` in `file.rs` to improve debugging output.
- **Testing Enhancements**:
- Added new test `test_compaction_overlapping_files` in `compaction_test.rs` to verify compaction behavior with overlapping files.
- Updated `merge_mode_test.rs` to reflect changes in file handling during scans.
* feat/revise-compaction-picker:
### Update `FileHandle` Debug Implementation
- **Refactor Debug Output**: Simplified the `fmt::Debug` implementation for `FileHandle` in `src/mito2/src/sst/file.rs` by consolidating multiple fields into a single `meta` field using `meta_ref()`.
- **Atomic Operations**: Updated the `deleted` field to use atomic loading with `Ordering::Relaxed`.
* Trigger CI
* feat/revise-compaction-picker:
**Update compaction logic and default options**
- **`twcs.rs`**: Enhanced logging for compaction pick results by improving the formatting for better readability.
- **`options.rs`**: Modified the default `max_output_file_size` in `TwcsOptions` from 2GB to 512MB to optimize file handling and performance.
* feat/revise-compaction-picker:
Refactor `find_overlapping_items` to use an external result vector
- Updated `find_overlapping_items` in `src/mito2/src/compaction/run.rs` to accept a mutable result vector instead of returning a new vector, improving memory efficiency.
- Modified benchmarks in `src/mito2/benches/bench_compaction_picker.rs` to accommodate the new function signature.
- Adjusted tests in `src/mito2/src/compaction/run.rs` to use the updated function signature, ensuring correct functionality with the new approach.
* feat/revise-compaction-picker:
Improve file merging logic in `run.rs`
- Refactor the loop logic in `merge_seq_files` to simplify the iteration over file groups.
- Adjust the range for `end_idx` to include the endpoint, allowing for more flexible group selection.
- Remove the condition that skips groups with only one file, enabling more comprehensive processing of file sequences.
* feat/revise-compaction-picker:
Enhance `find_overlapping_items` with `SortedRun` and Update Tests
- Refactor `find_overlapping_items` in `src/mito2/src/compaction/run.rs` to utilize the `SortedRun` struct for improved efficiency and clarity.
- Introduce a `sorted` flag in `SortedRun` to optimize sorting operations.
- Update test cases in `src/mito2/benches/bench_compaction_picker.rs` to accommodate changes in `find_overlapping_items` by using `SortedRun`.
- Add `From<Vec<T>>` implementation for `SortedRun` to facilitate easy conversion from vectors.
* feat/revise-compaction-picker:
**Enhancements in `compaction/run.rs`:**
- Added `ReadableSize` import to handle size calculations.
- Modified the logic in `merge_seq_files` to clamp the calculated target size to a maximum of 2GB when `max_file_size` is not provided.
* feat/revise-compaction-picker: Add Default Max Output Size Constant for Compaction
Introduce DEFAULT_MAX_OUTPUT_SIZE constant to define the default maximum compaction output file size as 2GB. Refactor the merge_seq_files function to utilize this constant, ensuring consistent and maintainable code for handling file size limits during compaction.
* fix: select after alter
* fix: insert a proper row&catch a bug
* fix: alter table modify type modify default value type too
* refactor: per review
* chore: per review
* refactor: per review
* refactor: per review
* feat(fuzz): add set table options to alter fuzzer
* chore: clippy is happy, I'm sad
* chore: happy ci happy
* fix: unit test
* feat(fuzz): add unset table options to alter fuzzer
* fix: unit test
* feat(fuzz): add table option validator
* fix: make clippy happy
* chore: add comments
* chore: apply review comments
* fix: unit test
* feat(fuzz): add more ttl options
* fix: #5108
* chore: add comments
* chore: add comments
* fix(fuzz): adapt for new partition rules
* feat: implement naive fuzz test for region migration
* chore(ci): add ci cfg
* chore: apply suggestions from CR
* chore: apply suggestions from CR
* test: add e2e test for region failover
* chore: add ci cfg
* chore: reduce parallelism to 8
* fix(ci): enable region failure
* chore: set sqlx LogLevel to Off
* refactor: move help functions to utils
* feat: invoke `flush_table` and `compact_table` in fuzz tests
* feat: support to flush and compact physical metric table
* fix: avoid to create tables with the same name
* feat: validate values after flushing or compacting table
* feat(fuzz): add validator for inserted rows
* fix: compatibility with mysql types
* feat(fuzz): add datetime and date type in mysql for row validator
* refactor: let upper caller control whether to omit column list
* feat(fuzz): add insert logical table target
* ci: add fuzz_insert_logical_table ci cfg
* feat(fuzz): add create logical table target
* fix: drop physical table after fuzz test
* fix: remove backticks of table name in with clause
* fix: create physical and logical table properly
* chore: update comments
* chore(ci): add fuzz_create_logical_table ci cfg
* fix: create one logical table once a time
* fix: avoid possible duplicate table and column name
* feat: use hard-code physical table
* chore: remove useless phantom
* refactor: create logical table with struct initialization
* chore: suggested changes and corresponding test changes
* chore: clean up
* feat: add create table fuzz test
* chore: add ci cfg for fuzz tests
* refactor: remove redundant nightly config
* chore: run fuzz test in debug mode
* chore: use ubuntu-latest
* fix: close connection
* chore: add cache in fuzz test ci
* chore: apply suggestion from CR
* chore: apply suggestion from CR
* chore: refactor the fuzz test action
* feat(tests-fuzz): add CreateTableExprGenerator
* refactor: move Column to root of ir mod
* feat: add AlterTableExprGenerator
* feat: add Serialize and Deserialize derive
* chore: refactor the AlterExprGenerator
