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85 Commits

Author SHA1 Message Date
discord9
de8b889701 chore: update RustPython depend (#1406) 
* chore: update RustPython to newer version

* chore: bump ver

* chore: PR advices
 2023-04-18 15:39:57 +08:00
Ruihang Xia
a6e41cdd7b chore: bump arrow, parquet, datafusion and tonic (#1386) 
* bump arrow, parquet, datafusion, tonic and greptime-proto

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* add analyzer and fix test

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix clippy warnings

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* update sqlness result

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

---------

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>
 2023-04-15 00:03:15 +08:00
discord9
c20dbda598 feat: from/to numpy&collect concat (#1339) 
* feat: from/to numpy&collect concat

* feat: PyRecordBatch

* test: try import first,allow w/out numpy/pyarrow

* fix: cond compile flag

* doc: license

* feat: sql() ret PyRecordBatch&repr

* fix: after merge

* style: fmt

* chore: CR advices

* docs: update

* chore: resolve conflict
 2023-04-13 10:46:25 +08:00
discord9
716bde8f04 feat: benchmark some python script (#1356) 
* test: bench rspy&pyo3

* docs: add TODO

* api heavy

* Update src/script/benches/py_benchmark.rs

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

* style: toml fmt

* test: use `rayon` for threadpool

* test: compile first, run later

---------

Co-authored-by: Ruihang Xia <waynestxia@gmail.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
 2023-04-12 18:19:02 +08:00
Ruihang Xia
6b6617f9cb build: specify clippy denies in cargo config (#1351) 
* build: specify clippy denies in cargo config

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* deny implicit clone

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

---------

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>
 2023-04-11 09:48:52 +00:00
LFC
a3e47955b8 feat: information schema (#1327) 
* feat: basic information schema

* show information schema only for current catalog

* fix: fragile tests
 2023-04-07 16:50:14 +08:00
Ruihang Xia
da66138e80 refactor(error): remove backtrace, and introduce call-site location for debugging (#1329) 
* wip: global replace

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix compile

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix warnings

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* remove unneeded tests of errors

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix ErrorExt trait implementator

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix warnings

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix format

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix pyo3 tests

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

---------

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>
 2023-04-06 04:06:00 +00:00
Weny Xu
451f9d2d4e feat: support multi table engines (#1277) 
* feat: support multi table engines

* refactor: adapt SqlHandler to support multiple table engines

* refactor: refactor TableEngineManager

* chore: apply review suggestions

* chore: apply review suggestions

* chore: apply review suggestions

* chore: snafu context styling
 2023-04-03 14:49:12 +00:00
LFC
48c2841e4d feat: execute python script in distributed mode (#1264) 
* feat: execute python script in distributed mode

* fix: rebase develop
 2023-04-02 20:36:48 +08:00
discord9
b40193d7da test: align RsPy PyO3 Behavior (#1280) 
* feat: allow PyList Return in PyO3 Backend

* feat: mixed list

* feat: align&test

* chore: PR advices
 2023-03-30 17:45:21 +08:00
dennis zhuang
0ffa628c22 refactor: scripts perf and metrics (#1261) 
* refactor: retrieve pyvector datatype by inner vector

* perf: replace all ok_or to ok_or_else

* feat: adds metrics for scripts execution
 2023-03-28 10:07:21 +08:00
discord9
8ba0741c81 fix: set locals to main.dict too (#1242) 2023-03-27 15:23:52 +08:00
dennis zhuang
b4fc8c5b78 refactor: make sql function in scripts return a list of column vectors (#1243) 2023-03-27 08:50:19 +08:00
discord9
c788b7fc26 feat: slicing PyVector&Create DataFrame from sql (#1190) 
* chore: some typos

* feat: slicing for pyo3 vector

* feat: slice tests

* feat: from_sql

* feat: from_sql for dataframe

* test: df tests

* feat: `from_sql` for rspython

* test: tweak a bit

* test: and CR advices

* typos: ordered points

* chore: update error msg

* test: add more `slicing` testcase
 2023-03-24 15:37:45 +08:00
LFC
b77b561bc8 refactor: execute insert with select in query engine (#1181) 
* refactor: execute insert with select in query engine

* fix: resolve PR comments
 2023-03-23 10:38:26 +08:00
discord9
cbf64e65b9 refactor: put dataframe & query into greptime module (#1172) 
* feat: impl getitem for `vector`

* feat: mv `query`&`dataframe` into `greptime` for PyO3

* refactor: allow call dataframe&query

* refactor: pyo3 query&dataframe

* chore: CR advices
 2023-03-15 11:01:43 +08:00
LFC
604c20a83d refactor: remove the SQL execution interfaces in Datanode (#1135) 
* refactor: remove the SQL execution interfaces in Datanode
 2023-03-13 18:45:30 +08:00
Ning Sun
58bdf27068 fix: make pyo3 optional again (#1153) 
* fix: make pyo3 optional again

* Update src/script/Cargo.toml

Co-authored-by: dennis zhuang <killme2008@gmail.com>

---------

Co-authored-by: dennis zhuang <killme2008@gmail.com>
 2023-03-09 14:16:48 +00:00
discord9
610a895b66 feat: abi3 & abi37 (#1151) 2023-03-09 20:08:07 +08:00
Eugene Tolbakov
b31a6cb506 refactor: replace tempdir with tempfile (#1123) 
* refactor: replace tempdir with tempfile

* refactor(query): move tempfile dependency under the workspace's Cargo.toml

* refactor(tempfile): create common-test-util

* refactor(tempfile): fix toml format

* refactor(tempfile): remove tempfile out of dependencies

* refactor(tempfile): fix incorrect toml
 2023-03-08 11:15:56 +08:00
discord9
379f581780 test: add Integrated Test for Coprocessor& fix minor bugs (#1122) 
* feat: cache `Runtime`

* fix: coprstream schema not set

* test: integrated tests for Coprocessor

* fix: UDF fixed

* style: remove unused import

* chore: remove more unused import

* feat: `filter`, (r)floordiv for Vector

* chore: CR advices

* feat: auto convert to `lit`

* chore: fix typo

* feat: from&to `pyarrow.array`

* feat: allow `pyarrow.array` as args to builtins

* chore: cargo fmt

* test: CI add `pyarrow`

* test: install Python&PyArrow in CI

* test: not cache depend for now

* chore: CR advices

* test: fix name

* style: rename
 2023-03-06 19:20:59 +08:00
Ning Sun
8e7e68708f docs: correct readme format (#1105) 
* docs: correct readme format

* ci: fix config name
 2023-03-01 16:59:11 +08:00
Ning Sun
d402f83442 ci: generate apidocs when pushing to default branch (#1093) 
* ci: generate apidocs when pushing to default branch

* ci: require clippy before running tests

* fix: resolve new clippy warnings on primitive slice

* fix: resolve more clippy warnings

* Update .github/workflows/apidoc.yml

Co-authored-by: Ruihang Xia <waynestxia@gmail.com>

* ci: add an index html to redirect

---------

Co-authored-by: Ruihang Xia <waynestxia@gmail.com>
 2023-03-01 13:18:26 +08:00
discord9
c5c6494e0b feat: add PyO3(Hence CPython as a Optional Backend (#976) 
* refactor: ffi_types

* style: fmt

* refactor: use `String` for return when possible

* todo: vector_impl

* feat: pyobj_try_typed_val

* refactor: more backend indep function

* feat: +-*/ magic methods

* refactor: copr

* style: fmt

* feat: add paired tests

* refactor: more

* refactor: move inside `python` folder

* refactor: all but test code

* feat: builtins for PyO3

* chore: add licenses

* chore: remove unused&add todos

* refactor: remove old files

* chore: mark unused

* chore: fmt

* chore: license

* feat: query in PyO3

* test: paired testcases for rspy&pyo3

* feat: PyDataFrame(Untested)

* feat: some allow_threads

* style: fmt

* style: add license

* feat: rebase manually of #962

* feat: more `allow_threads`

* chore: typo

* chore: remove some `TODO`

* test: allow margin of epsilon

* chore: code review advices

* chore: more CR adjust

* chore: more adjust

* feat: kwargs&its test

* chore: remove some `dbg!`

* chore: allow params

* fix: put `dataframe` into scope

* chore: newline

* fix: adjust after rebase

* fix: test serde skip attr

* style: taplo

* feat: add `pyo3_backend` feature

* doc: update CI&readme
 2023-03-01 10:45:55 +08:00
LFC
11d45e2918 refactor: upgrade DataFusion, Arrow and Sqlparser (#1074) 
* refactor: upgrade DataFusion, Arrow and Sqlparser

* fix: resolve PR comments
 2023-02-27 22:20:08 +08:00
Ruihang Xia
4cc3ac37d5 feat: add DictionaryVector DataType (#1061) 
* fix stddev and stdvar. try build range function expr

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* feat: add dictionary data type

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* preserve timestamp column in range manipulator

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* plan range functions

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* update test result

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix typo

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* update test result

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* update test result

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* resolve CR comments

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* resolve CR comments

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

---------

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>
 2023-02-23 20:31:07 +08:00
Lei, HUANG
e17d5a1c41 feat: support table options (#1044) 
* feat: change table options from string map to a struct, add ttl and write_buffer_size

* fix: also pass table options to table meta

* feat: pass table options when opening/creating regions

* fix: CR comments
 2023-02-21 08:10:23 +00:00
Zhizhen He
6833b405d9 ci: upgrade spell checker to 1.13.10 (#1045) 
* ci: upgrade spell checker to 1.13.10

Signed-off-by: Zhizhen He <hezhizhen.yi@gmail.com>

* fix: fix existing typos

Signed-off-by: Zhizhen He <hezhizhen.yi@gmail.com>

* chore: use taplo to format typos.toml

Signed-off-by: Zhizhen He <hezhizhen.yi@gmail.com>

* chore: add fmt-toml rule to format TOML files

Signed-off-by: Zhizhen He <hezhizhen.yi@gmail.com>

---------

Signed-off-by: Zhizhen He <hezhizhen.yi@gmail.com>
 2023-02-21 10:55:27 +08:00
Eugene Tolbakov
7787cfdd42 refactor(datatypes): enhance MutableVector methods (#987) 
* refactor(datatypes): enhance MutableVector methods

* refactor(datatypes): address code review issues

* refactor(datatypes): address more code review issues

* refactor(datatypes): fix merge conflicts

* refactor(datatypes): address code review issues

* refactor(datatypes): address more code review issues

* refactor(datatypes): update sql delete with the newly introduced method
 2023-02-17 16:16:23 +08:00
dennis zhuang
5ec1a7027b feat: supports passing user params into coprocessor (#962) 
* feat: make args in coprocessor optional

* feat: supports kwargs for coprocessor as params passed by the users

* feat: supports params for /run-script

* fix: we should rewrite the coprocessor by removing kwargs

* fix: remove println

* fix: compile error after rebasing

* fix: improve http_handler_test

* test: http scripts api with user params

* refactor: tweak all to_owned
 2023-02-16 16:11:26 +08:00
Yingwen
ddbc97befb refactor: changes CreateTableRequest::schema to RawSchema (#1018) 
* refactor: changes CreateTableRequest::schema to RawSchema

* refactor(grpc-expr): create_table_schema returns RawSchema
 2023-02-16 16:04:17 +08:00
Ruihang Xia
a8c2b35ec6 chore: bump rust to nightly-2023-02-14 (#1019) 
* chore: bump rust to nightly-2023-02-14

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix clippy

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* bump statrs to 0.16

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

---------

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>
 2023-02-16 13:17:57 +08:00
Lei, HUANG
75b8afe043 feat: compaction integration (#997) 
* feat: trigger compaction on flush

* chore: rebase develop

* feat: add config item max_file_in_level0 and remove compaction_after_flush

* fix: cr comments

* chore: add unit test to cover Timestamp::new_inclusive

* fix: workaround to fix future is not Sync

* fix: future is not sync

* fix: some cr comments
 2023-02-15 14:14:07 +08:00
discord9
7c34b009ec feat: bind DataFrame API into python script (#945) 
* chore: remove unused magic fn

* feat: dataframe

* feat: add data_frame crate

* feat: more api binded

* fix: `Comparable` for overload op

* fix: license&more test

* chore: PR advices

* chore: more PR advices
 2023-02-10 11:21:57 +08:00
ShenJunkun
afac885c10 refactor: add schema column to the scripts table (#868) 2023-02-07 11:07:32 +08:00
Lei, HUANG
5d62e193bd feat: support multi regions on datanode (#653) 
* wip: fix compile errors

* chore: move splitter to partition crate

* fix: remove useless variants in frontend errors

* chore: move more partition related code to partition manager

* fix: license header

* wip: move WriteSplitter to PartitionRuleManager

* fix: clippy warnings

* chore: remove useless error variant and format toml

* fix: cr comments

* chore: resolve conflicts

* chore: rebase develop

* fix: cr comments

* feat: support multi regions on datanode

* chore: rebase onto develop

* chore: rebase develop

* chore: rebase develop

* wip

* fix: compile errors

* feat: multi region

* fix: CR comments

* feat: allow stat existing regions without actually open it

* fix: use table meta in manifest to recover region info
 2023-02-07 10:46:18 +08:00
discord9
ebbf1e43b5 feat: Query using sql inside python script (#884) 
* feat: add weakref to QueryEngine in copr

* feat: sql query in python

* fix: make_class for Query Engine

* fix: use `Handle::try_current` instead

* fix: cache `Runtime`

* fix: lock file conflict

* fix: dedicated thread for blocking&fix test

* test: remove unnecessary print
 2023-02-03 15:05:27 +08:00
Ruihang Xia
36a13dafb7 build(deps): bump tokio to 1.24.2 (#900) 
deps: bump tokio to 1.24.2

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>
 2023-01-29 11:13:37 +08:00
discord9
e428a84446 feat: use Python Script as UDF in SQL (#839) 
* feat: reg PyScript as UDF

* refactor: use `ConcreteDataType` instead

* fix: accept `str` data type

* fix: allow binary to capture SIGINT

* test: add test for py udf

* Update src/servers/tests/py_script/mod.rs

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

* style: clippy problem

* style: add newline

* chore: PR advices

Co-authored-by: Ruihang Xia <waynestxia@gmail.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
 2023-01-13 14:35:03 +08:00
LFC
72f05a3137 feat: flight aboard (#840) 
feat: replace old GRPC interface with Arrow Flight
 2023-01-09 17:06:24 +08:00
Ruihang Xia
2679faf911 refactor: move parse methods out of QueryEngine trait (#850) 
* refactor: move parse methods out of QueryEngine trait

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix styles

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* add test

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* change style

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* add license header

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix test literal

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>
 2023-01-09 15:44:20 +08:00
Lei, HUANG
627d444723 fix: remove start from LogStore; fix error message (#837) 2023-01-06 12:21:00 +08:00
Lei, HUANG
8f5ecefc90 feat: use raft-engine crate to reimplement logstore (#799) 
* chore: remove useless method in Entry trait, add proto definition for entry and namespace

* feat: add proto definition for raft-engine based logstore

* feat: introduce RaftEngineLogstore

* feat: impl read for raft engine log store

* feat: impl raft engine logstore

* feat: raft engine logstore start and stop

* feat: add purge bg task

* fix: license header

* fix: clippy

* fix: toml files

* feat: add some test cases

* fix: CR comments

* fix: CR comments

* fix: check namespace validity and state of logstore

* fix: CR comments; add config item to control sync/async flush per write

* fix: remove unused error variants

* fix: unit tests

* fix: use compare and exchange to stop logstore

* fix: CR comments
 2023-01-05 17:18:51 +08:00
Ruihang Xia
0566f812d3 refactor: remove macro define_opaque_error (#812) 
* refactor: remove macro define_opaque_error

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* impl BoxedError

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* fix tests

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

* remove open-region error

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>
 2023-01-03 15:50:27 +08:00
Lei, HUANG
8ffc078f88 fix: license header (#815) 2023-01-03 15:09:49 +08:00
discord9
6fe205f3b5 chore: Update RustPython(With GC) (#809) 
* chore: use newest RustPython

* chore: use Garbage collected RustPython Fork

* style: format toml
 2022-12-30 16:55:43 +08:00
Ruihang Xia
26a3e93ca7 chore: util workspace deps in more places (#792) 
Signed-off-by: Ruihang Xia <waynestxia@gmail.com>

Signed-off-by: Ruihang Xia <waynestxia@gmail.com>
 2022-12-27 16:26:59 +08:00
discord9
e85780b5e4 refactor: rename some mod.rs to <MOD_NAME>.rs (#784) 
* refactor: rename `mod.rs` to <MOD_NAME>.rs

* refactor: not rename mod.rs in benches/
 2022-12-26 12:48:34 +08:00
LFC
dc52a51576 chore: upgrade to Arrow 29.0 and use workspace package and dependencies (#782) 
* chore: upgrade to Arrow 29.0 and use workspace package and dependencies

* fix: resolve PR comments

Co-authored-by: luofucong <luofucong@greptime.com>
 2022-12-23 14:28:37 +08:00
LFC
ea9af42091 chore: upgrade Rust to nightly 2022-12-20 (#772) 
* chore: upgrade Rust to nightly 2022-12-20

* chore: upgrade Rust to nightly 2022-12-20

Co-authored-by: luofucong <luofucong@greptime.com>
 2022-12-21 19:32:30 +08:00