Files
greptimedb/src/cmd/src/datanode/objbench.rs
dennis zhuang e4b5ef275f feat: impl vector index building (#7468)
* feat: impl vector index building

Signed-off-by: Dennis Zhuang <killme2008@gmail.com>

* feat: supports flat format

Signed-off-by: Dennis Zhuang <killme2008@gmail.com>

* ci: add vector_index feature to test

Signed-off-by: Dennis Zhuang <killme2008@gmail.com>

* chore: apply suggestions

Signed-off-by: Dennis Zhuang <killme2008@gmail.com>

* chore: apply suggestions from copilot

Signed-off-by: Dennis Zhuang <killme2008@gmail.com>

---------

Signed-off-by: Dennis Zhuang <killme2008@gmail.com>
2025-12-30 03:38:51 +00:00

693 lines
24 KiB
Rust

// Copyright 2023 Greptime Team
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
use std::path::PathBuf;
use std::sync::Arc;
use std::time::Instant;
use clap::Parser;
use colored::Colorize;
use datanode::config::RegionEngineConfig;
use datanode::store;
use either::Either;
use mito2::access_layer::{
AccessLayer, AccessLayerRef, Metrics, OperationType, SstWriteRequest, WriteType,
};
use mito2::cache::{CacheManager, CacheManagerRef};
use mito2::config::{FulltextIndexConfig, MitoConfig, Mode};
use mito2::read::Source;
use mito2::sst::file::{FileHandle, FileMeta};
use mito2::sst::file_purger::{FilePurger, FilePurgerRef};
use mito2::sst::index::intermediate::IntermediateManager;
use mito2::sst::index::puffin_manager::PuffinManagerFactory;
use mito2::sst::parquet::reader::ParquetReaderBuilder;
use mito2::sst::parquet::{PARQUET_METADATA_KEY, WriteOptions};
use mito2::worker::write_cache_from_config;
use object_store::ObjectStore;
use regex::Regex;
use snafu::OptionExt;
use store_api::metadata::{RegionMetadata, RegionMetadataRef};
use store_api::path_utils::region_name;
use store_api::region_request::PathType;
use store_api::storage::FileId;
use crate::datanode::{StorageConfig, StorageConfigWrapper};
use crate::error;
/// Object storage benchmark command
#[derive(Debug, Parser)]
pub struct ObjbenchCommand {
/// Path to the object-store config file (TOML). Must deserialize into object_store::config::ObjectStoreConfig.
#[clap(long, value_name = "FILE")]
pub config: PathBuf,
/// Source SST file path in object-store (e.g. "region_dir/<uuid>.parquet").
#[clap(long, value_name = "PATH")]
pub source: String,
/// Verbose output
#[clap(short, long, default_value_t = false)]
pub verbose: bool,
/// Output file path for pprof flamegraph (enables profiling)
#[clap(long, value_name = "FILE")]
pub pprof_file: Option<PathBuf>,
}
fn parse_config(config_path: &PathBuf) -> error::Result<(StorageConfig, MitoConfig)> {
let cfg_str = std::fs::read_to_string(config_path).map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("failed to read config {}: {e}", config_path.display()),
}
.build()
})?;
let store_cfg: StorageConfigWrapper = toml::from_str(&cfg_str).map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("failed to parse config {}: {e}", config_path.display()),
}
.build()
})?;
let storage_config = store_cfg.storage;
let mito_engine_config = store_cfg
.region_engine
.into_iter()
.filter_map(|c| {
if let RegionEngineConfig::Mito(mito) = c {
Some(mito)
} else {
None
}
})
.next()
.with_context(|| error::IllegalConfigSnafu {
msg: format!("Engine config not found in {:?}", config_path),
})?;
Ok((storage_config, mito_engine_config))
}
impl ObjbenchCommand {
pub async fn run(&self) -> error::Result<()> {
if self.verbose {
common_telemetry::init_default_ut_logging();
}
println!("{}", "Starting objbench with config:".cyan().bold());
// Build object store from config
let (store_cfg, mut mito_engine_config) = parse_config(&self.config)?;
let object_store = build_object_store(&store_cfg).await?;
println!("{} Object store initialized", "".green());
// Prepare source identifiers
let components = parse_file_dir_components(&self.source)?;
println!(
"{} Source path parsed: {}, components: {:?}",
"".green(),
self.source,
components
);
// Load parquet metadata to extract RegionMetadata and file stats
println!("{}", "Loading parquet metadata...".yellow());
let file_size = object_store
.stat(&self.source)
.await
.map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("stat failed: {e}"),
}
.build()
})?
.content_length();
let parquet_meta = load_parquet_metadata(object_store.clone(), &self.source, file_size)
.await
.map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("read parquet metadata failed: {e}"),
}
.build()
})?;
let region_meta = extract_region_metadata(&self.source, &parquet_meta)?;
let num_rows = parquet_meta.file_metadata().num_rows() as u64;
let num_row_groups = parquet_meta.num_row_groups() as u64;
let max_row_group_uncompressed_size: u64 = parquet_meta
.row_groups()
.iter()
.map(|rg| {
rg.columns()
.iter()
.map(|c| c.uncompressed_size() as u64)
.sum::<u64>()
})
.max()
.unwrap_or(0);
println!(
"{} Metadata loaded - rows: {}, size: {} bytes",
"".green(),
num_rows,
file_size
);
// Build a FileHandle for the source file
let file_meta = FileMeta {
region_id: region_meta.region_id,
file_id: components.file_id,
time_range: Default::default(),
level: 0,
file_size,
max_row_group_uncompressed_size,
available_indexes: Default::default(),
indexes: Default::default(),
index_file_size: 0,
index_version: 0,
num_rows,
num_row_groups,
sequence: None,
partition_expr: None,
num_series: 0,
};
let src_handle = FileHandle::new(file_meta, new_noop_file_purger());
// Build the reader for a single file via ParquetReaderBuilder
let table_dir = components.table_dir();
let (src_access_layer, cache_manager) = build_access_layer_simple(
&components,
object_store.clone(),
&mut mito_engine_config,
&store_cfg.data_home,
)
.await?;
let reader_build_start = Instant::now();
let reader = ParquetReaderBuilder::new(
table_dir,
components.path_type,
src_handle.clone(),
object_store.clone(),
)
.expected_metadata(Some(region_meta.clone()))
.build()
.await
.map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("build reader failed: {e:?}"),
}
.build()
})?;
let reader_build_elapsed = reader_build_start.elapsed();
let total_rows = reader.parquet_metadata().file_metadata().num_rows();
println!("{} Reader built in {:?}", "".green(), reader_build_elapsed);
// Build write request
let fulltext_index_config = FulltextIndexConfig {
create_on_compaction: Mode::Disable,
..Default::default()
};
let write_req = SstWriteRequest {
op_type: OperationType::Flush,
metadata: region_meta,
source: Either::Left(Source::Reader(Box::new(reader))),
cache_manager,
storage: None,
max_sequence: None,
index_options: Default::default(),
index_config: mito_engine_config.index.clone(),
inverted_index_config: MitoConfig::default().inverted_index,
fulltext_index_config,
bloom_filter_index_config: MitoConfig::default().bloom_filter_index,
#[cfg(feature = "vector_index")]
vector_index_config: Default::default(),
};
// Write SST
println!("{}", "Writing SST...".yellow());
// Start profiling if pprof_file is specified
#[cfg(unix)]
let profiler_guard = if self.pprof_file.is_some() {
println!("{} Starting profiling...", "".yellow());
Some(
pprof::ProfilerGuardBuilder::default()
.frequency(99)
.blocklist(&["libc", "libgcc", "pthread", "vdso"])
.build()
.map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("Failed to start profiler: {e}"),
}
.build()
})?,
)
} else {
None
};
#[cfg(not(unix))]
if self.pprof_file.is_some() {
eprintln!(
"{}: Profiling is not supported on this platform",
"Warning".yellow()
);
}
let write_start = Instant::now();
let mut metrics = Metrics::new(WriteType::Flush);
let infos = src_access_layer
.write_sst(write_req, &WriteOptions::default(), &mut metrics)
.await
.map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("write_sst failed: {e:?}"),
}
.build()
})?;
let write_elapsed = write_start.elapsed();
// Stop profiling and generate flamegraph if enabled
#[cfg(unix)]
if let (Some(guard), Some(pprof_file)) = (profiler_guard, &self.pprof_file) {
println!("{} Generating flamegraph...", "🔥".yellow());
match guard.report().build() {
Ok(report) => {
let mut flamegraph_data = Vec::new();
if let Err(e) = report.flamegraph(&mut flamegraph_data) {
println!("{}: Failed to generate flamegraph: {}", "Error".red(), e);
} else if let Err(e) = std::fs::write(pprof_file, flamegraph_data) {
println!(
"{}: Failed to write flamegraph to {}: {}",
"Error".red(),
pprof_file.display(),
e
);
} else {
println!(
"{} Flamegraph saved to {}",
"".green(),
pprof_file.display().to_string().cyan()
);
}
}
Err(e) => {
println!("{}: Failed to generate pprof report: {}", "Error".red(), e);
}
}
}
assert_eq!(infos.len(), 1);
let dst_file_id = infos[0].file_id;
let dst_file_path = format!("{}/{}.parquet", components.region_dir(), dst_file_id);
let mut dst_index_path = None;
if infos[0].index_metadata.file_size > 0 {
dst_index_path = Some(format!(
"{}/index/{}.puffin",
components.region_dir(),
dst_file_id
));
}
// Report results with ANSI colors
println!("\n{} {}", "Write complete!".green().bold(), "".green());
println!(" {}: {}", "Destination file".bold(), dst_file_path.cyan());
println!(" {}: {}", "Rows".bold(), total_rows.to_string().cyan());
println!(
" {}: {}",
"File size".bold(),
format!("{} bytes", file_size).cyan()
);
println!(
" {}: {:?}",
"Reader build time".bold(),
reader_build_elapsed
);
println!(" {}: {:?}", "Total time".bold(), write_elapsed);
// Print metrics in a formatted way
println!(" {}: {:?}", "Metrics".bold(), metrics,);
// Print infos
println!(" {}: {:?}", "Index".bold(), infos[0].index_metadata);
// Cleanup
println!("\n{}", "Cleaning up...".yellow());
object_store.delete(&dst_file_path).await.map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("Failed to delete dest file {}: {}", dst_file_path, e),
}
.build()
})?;
println!("{} Temporary file {} deleted", "".green(), dst_file_path);
if let Some(index_path) = dst_index_path {
object_store.delete(&index_path).await.map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("Failed to delete dest index file {}: {}", index_path, e),
}
.build()
})?;
println!(
"{} Temporary index file {} deleted",
"".green(),
index_path
);
}
println!("\n{}", "Benchmark completed successfully!".green().bold());
Ok(())
}
}
#[derive(Debug)]
struct FileDirComponents {
catalog: String,
schema: String,
table_id: u32,
region_sequence: u32,
path_type: PathType,
file_id: FileId,
}
impl FileDirComponents {
fn table_dir(&self) -> String {
format!("data/{}/{}/{}", self.catalog, self.schema, self.table_id)
}
fn region_dir(&self) -> String {
let region_name = region_name(self.table_id, self.region_sequence);
match self.path_type {
PathType::Bare => {
format!(
"data/{}/{}/{}/{}",
self.catalog, self.schema, self.table_id, region_name
)
}
PathType::Data => {
format!(
"data/{}/{}/{}/{}/data",
self.catalog, self.schema, self.table_id, region_name
)
}
PathType::Metadata => {
format!(
"data/{}/{}/{}/{}/metadata",
self.catalog, self.schema, self.table_id, region_name
)
}
}
}
}
fn parse_file_dir_components(path: &str) -> error::Result<FileDirComponents> {
// Define the regex pattern to match all three path styles
let pattern =
r"^data/([^/]+)/([^/]+)/([^/]+)/([^/]+)_([^/]+)(?:/data|/metadata)?/(.+).parquet$";
// Compile the regex
let re = Regex::new(pattern).expect("Invalid regex pattern");
// Determine the path type
let path_type = if path.contains("/data/") {
PathType::Data
} else if path.contains("/metadata/") {
PathType::Metadata
} else {
PathType::Bare
};
// Try to match the path
let components = (|| {
let captures = re.captures(path)?;
if captures.len() != 7 {
return None;
}
let mut components = FileDirComponents {
catalog: "".to_string(),
schema: "".to_string(),
table_id: 0,
region_sequence: 0,
path_type,
file_id: FileId::default(),
};
// Extract the components
components.catalog = captures.get(1)?.as_str().to_string();
components.schema = captures.get(2)?.as_str().to_string();
components.table_id = captures[3].parse().ok()?;
components.region_sequence = captures[5].parse().ok()?;
let file_id_str = &captures[6];
components.file_id = FileId::parse_str(file_id_str).ok()?;
Some(components)
})();
components.context(error::IllegalConfigSnafu {
msg: format!("Expect valid source file path, got: {}", path),
})
}
fn extract_region_metadata(
file_path: &str,
meta: &parquet::file::metadata::ParquetMetaData,
) -> error::Result<RegionMetadataRef> {
use parquet::format::KeyValue;
let kvs: Option<&Vec<KeyValue>> = meta.file_metadata().key_value_metadata();
let Some(kvs) = kvs else {
return Err(error::IllegalConfigSnafu {
msg: format!("{file_path}: missing parquet key_value metadata"),
}
.build());
};
let json = kvs
.iter()
.find(|kv| kv.key == PARQUET_METADATA_KEY)
.and_then(|kv| kv.value.as_ref())
.ok_or_else(|| {
error::IllegalConfigSnafu {
msg: format!("{file_path}: key {PARQUET_METADATA_KEY} not found or empty"),
}
.build()
})?;
let region: RegionMetadata = RegionMetadata::from_json(json).map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("invalid region metadata json: {e}"),
}
.build()
})?;
Ok(Arc::new(region))
}
async fn build_object_store(sc: &StorageConfig) -> error::Result<ObjectStore> {
store::new_object_store(sc.store.clone(), &sc.data_home)
.await
.map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("Failed to build object store: {e:?}"),
}
.build()
})
}
async fn build_access_layer_simple(
components: &FileDirComponents,
object_store: ObjectStore,
config: &mut MitoConfig,
data_home: &str,
) -> error::Result<(AccessLayerRef, CacheManagerRef)> {
let _ = config.index.sanitize(data_home, &config.inverted_index);
let puffin_manager = PuffinManagerFactory::new(
&config.index.aux_path,
config.index.staging_size.as_bytes(),
Some(config.index.write_buffer_size.as_bytes() as _),
config.index.staging_ttl,
)
.await
.map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("Failed to build access layer: {e:?}"),
}
.build()
})?;
let intermediate_manager = IntermediateManager::init_fs(&config.index.aux_path)
.await
.map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("Failed to build IntermediateManager: {e:?}"),
}
.build()
})?
.with_buffer_size(Some(config.index.write_buffer_size.as_bytes() as _));
let cache_manager =
build_cache_manager(config, puffin_manager.clone(), intermediate_manager.clone()).await?;
let layer = AccessLayer::new(
components.table_dir(),
components.path_type,
object_store,
puffin_manager,
intermediate_manager,
);
Ok((Arc::new(layer), cache_manager))
}
async fn build_cache_manager(
config: &MitoConfig,
puffin_manager: PuffinManagerFactory,
intermediate_manager: IntermediateManager,
) -> error::Result<CacheManagerRef> {
let write_cache = write_cache_from_config(config, puffin_manager, intermediate_manager)
.await
.map_err(|e| {
error::IllegalConfigSnafu {
msg: format!("Failed to build write cache: {e:?}"),
}
.build()
})?;
let cache_manager = Arc::new(
CacheManager::builder()
.sst_meta_cache_size(config.sst_meta_cache_size.as_bytes())
.vector_cache_size(config.vector_cache_size.as_bytes())
.page_cache_size(config.page_cache_size.as_bytes())
.selector_result_cache_size(config.selector_result_cache_size.as_bytes())
.index_metadata_size(config.index.metadata_cache_size.as_bytes())
.index_content_size(config.index.content_cache_size.as_bytes())
.index_content_page_size(config.index.content_cache_page_size.as_bytes())
.index_result_cache_size(config.index.result_cache_size.as_bytes())
.puffin_metadata_size(config.index.metadata_cache_size.as_bytes())
.write_cache(write_cache)
.build(),
);
Ok(cache_manager)
}
fn new_noop_file_purger() -> FilePurgerRef {
#[derive(Debug)]
struct Noop;
impl FilePurger for Noop {
fn remove_file(&self, _file_meta: FileMeta, _is_delete: bool, _index_outdated: bool) {}
}
Arc::new(Noop)
}
async fn load_parquet_metadata(
object_store: ObjectStore,
path: &str,
file_size: u64,
) -> Result<parquet::file::metadata::ParquetMetaData, Box<dyn std::error::Error + Send + Sync>> {
use parquet::file::FOOTER_SIZE;
use parquet::file::metadata::ParquetMetaDataReader;
let actual_size = if file_size == 0 {
object_store.stat(path).await?.content_length()
} else {
file_size
};
if actual_size < FOOTER_SIZE as u64 {
return Err("file too small".into());
}
let prefetch: u64 = 64 * 1024;
let start = actual_size.saturating_sub(prefetch);
let buffer = object_store
.read_with(path)
.range(start..actual_size)
.await?
.to_vec();
let buffer_len = buffer.len();
let mut footer = [0; 8];
footer.copy_from_slice(&buffer[buffer_len - FOOTER_SIZE..]);
let footer = ParquetMetaDataReader::decode_footer_tail(&footer)?;
let metadata_len = footer.metadata_length() as u64;
if actual_size - (FOOTER_SIZE as u64) < metadata_len {
return Err("invalid footer/metadata length".into());
}
if (metadata_len as usize) <= buffer_len - FOOTER_SIZE {
let metadata_start = buffer_len - metadata_len as usize - FOOTER_SIZE;
let meta = ParquetMetaDataReader::decode_metadata(
&buffer[metadata_start..buffer_len - FOOTER_SIZE],
)?;
Ok(meta)
} else {
let metadata_start = actual_size - metadata_len - FOOTER_SIZE as u64;
let data = object_store
.read_with(path)
.range(metadata_start..(actual_size - FOOTER_SIZE as u64))
.await?
.to_vec();
let meta = ParquetMetaDataReader::decode_metadata(&data)?;
Ok(meta)
}
}
#[cfg(test)]
mod tests {
use std::path::PathBuf;
use std::str::FromStr;
use common_base::readable_size::ReadableSize;
use store_api::region_request::PathType;
use crate::datanode::objbench::{parse_config, parse_file_dir_components};
#[test]
fn test_parse_dir() {
let meta_path = "data/greptime/public/1024/1024_0000000000/metadata/00020380-009c-426d-953e-b4e34c15af34.parquet";
let c = parse_file_dir_components(meta_path).unwrap();
assert_eq!(
c.file_id.to_string(),
"00020380-009c-426d-953e-b4e34c15af34"
);
assert_eq!(c.catalog, "greptime");
assert_eq!(c.schema, "public");
assert_eq!(c.table_id, 1024);
assert_eq!(c.region_sequence, 0);
assert_eq!(c.path_type, PathType::Metadata);
let c = parse_file_dir_components(
"data/greptime/public/1024/1024_0000000000/data/00020380-009c-426d-953e-b4e34c15af34.parquet",
).unwrap();
assert_eq!(
c.file_id.to_string(),
"00020380-009c-426d-953e-b4e34c15af34"
);
assert_eq!(c.catalog, "greptime");
assert_eq!(c.schema, "public");
assert_eq!(c.table_id, 1024);
assert_eq!(c.region_sequence, 0);
assert_eq!(c.path_type, PathType::Data);
let c = parse_file_dir_components(
"data/greptime/public/1024/1024_0000000000/00020380-009c-426d-953e-b4e34c15af34.parquet",
).unwrap();
assert_eq!(
c.file_id.to_string(),
"00020380-009c-426d-953e-b4e34c15af34"
);
assert_eq!(c.catalog, "greptime");
assert_eq!(c.schema, "public");
assert_eq!(c.table_id, 1024);
assert_eq!(c.region_sequence, 0);
assert_eq!(c.path_type, PathType::Bare);
}
#[test]
fn test_parse_config() {
let path = "../../config/datanode.example.toml";
let (storage, engine) = parse_config(&PathBuf::from_str(path).unwrap()).unwrap();
assert_eq!(storage.data_home, "./greptimedb_data");
assert_eq!(engine.index.staging_size, ReadableSize::gb(2));
}
}