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Clarify that flush-boundary invalidation is part of IncrementalQueryStale, and document the in-memory checkpoint plus cold-start full snapshot recovery model. Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent) Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai> Signed-off-by: discord9 <discord9@163.com>