Merge origin/main into gatekeeper/fix-2325-1

This commit is contained in:
Gatefixer
2026-08-14 21:59:28 +00:00
77 changed files with 5758 additions and 548 deletions
+1 -1
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@@ -1,6 +1,6 @@
[package]
name = "lancedb-python"
version = "0.37.1-beta.0"
version = "0.38.0-beta.0"
publish = false
edition.workspace = true
description = "Python bindings for LanceDB"
+18 -4
View File
@@ -198,6 +198,9 @@ class Connection(object):
async def drop_table(
self, name: str, namespace_path: Optional[List[str]] = None
) -> None: ...
async def drop_table_async(
self, name: str, namespace_path: Optional[List[str]] = None
) -> Job: ...
async def drop_all_tables(
self, namespace_path: Optional[List[str]] = None
) -> None: ...
@@ -335,6 +338,10 @@ class Table:
) -> list[FtsToken]: ...
async def delete(self, filter: Union[str, PyExpr]) -> DeleteResult: ...
async def add_columns(self, columns: list[tuple[str, str]]) -> AddColumnsResult: ...
async def add_computed_columns(
self, columns: list[tuple[str, str]]
) -> AddColumnsResult: ...
async def refresh_column(self, column: str) -> RefreshColumnResult: ...
async def add_columns_with_schema(self, schema: pa.Schema) -> AddColumnsResult: ...
async def alter_columns(
self, columns: list[dict[str, Any]]
@@ -654,9 +661,10 @@ class LsmWriteSpec:
def identity(column: str) -> "LsmWriteSpec": ...
@staticmethod
def unsharded() -> "LsmWriteSpec": ...
def with_maintained_indexes(self, indexes: List[str]) -> "LsmWriteSpec":
"""Return a copy of this spec asking the MemWAL to keep the named
indexes up to date as rows are appended."""
def with_maintained_indexes(self, indexes: Optional[List[str]]) -> "LsmWriteSpec":
"""Set which indexes the MemWAL keeps up to date. None resolves every
index on the table at install, failing if one cannot be maintained;
a list is verbatim, empty means none."""
...
def with_writer_config_defaults(self, defaults: Dict[str, str]) -> "LsmWriteSpec":
"""Return a copy of this spec recording the given default
@@ -671,13 +679,19 @@ class LsmWriteSpec:
@property
def num_buckets(self) -> Optional[int]: ...
@property
def maintained_indexes(self) -> List[str]: ...
def maintained_indexes(self) -> Optional[List[str]]:
"""Indexes the MemWAL keeps up to date, or None for every supported one."""
...
@property
def writer_config_defaults(self) -> Dict[str, str]: ...
class AddColumnsResult:
version: int
class RefreshColumnResult:
rows_filled: int
version: int
class AlterColumnsResult:
version: int
+37
View File
@@ -524,6 +524,12 @@ class DBConnection(EnforceOverrides):
namespace_path = []
raise NotImplementedError
def drop_table_async(
self, name: str, namespace_path: Optional[List[str]] = None
) -> Job:
"""Start dropping a table and return its cleanup job."""
raise NotImplementedError
def rename_table(
self,
cur_name: str,
@@ -1186,6 +1192,20 @@ class LanceDBConnection(DBConnection):
)
)
@override
def drop_table_async(
self, name: str, namespace_path: Optional[List[str]] = None
) -> Job:
"""Start dropping a table and return its cleanup job.
The table may become unavailable before its data files are removed.
Call :meth:`Job.wait` to wait for cleanup to finish.
"""
if namespace_path is None:
namespace_path = []
job = LOOP.run(self._conn.drop_table_async(name, namespace_path=namespace_path))
return Job(job if isinstance(job, AsyncJob) else AsyncJob(job))
@override
def drop_all_tables(self, namespace_path: Optional[List[str]] = None):
if namespace_path is None:
@@ -1963,6 +1983,23 @@ class AsyncConnection(object):
if f"Table '{name}' was not found" not in str(e):
raise e
async def drop_table_async(
self,
name: str,
*,
namespace_path: Optional[List[str]] = None,
) -> AsyncJob:
"""Start dropping a table and return its cleanup job.
The table may become unavailable before its data files are removed.
Await :meth:`AsyncJob.wait` to wait for cleanup to finish.
"""
if namespace_path is None:
namespace_path = []
return AsyncJob(
await self._inner.drop_table_async(name, namespace_path=namespace_path)
)
async def drop_all_tables(self, namespace_path: Optional[List[str]] = None):
"""Drop all tables from the database.
+4 -3
View File
@@ -87,12 +87,13 @@ class JinaEmbeddings(EmbeddingFunction):
if isinstance(image, bytes):
image_dict = {"image": base64.b64encode(image).decode("utf-8")}
elif isinstance(image, (str, Path)):
parsed = urlparse.urlparse(image)
# TODO handle drive letter on windows.
parsed = urlparse(str(image))
PIL_Image = attempt_import_or_raise("PIL.Image", "pillow")
if parsed.scheme == "file":
pil_image = PIL_Image.open(parsed.path)
elif parsed.scheme == "":
elif parsed.scheme == "" or (os.name == "nt" and len(parsed.scheme) == 1):
# A Windows drive letter parses as a one-character scheme
# ("C:\\img.png" -> scheme="c"), so treat it as a local path.
pil_image = PIL_Image.open(image if os.name == "nt" else parsed.path)
elif parsed.scheme.startswith("http"):
pil_image = PIL_Image.open(io.BytesIO(url_retrieve(image)))
+21
View File
@@ -49,6 +49,7 @@ from lancedb._lancedb import (
)
from lancedb.background_loop import LOOP
from lancedb.db import AsyncConnection, DBConnection
from lancedb.job import AsyncJob, Job
from lance_namespace import (
LanceNamespace,
connect as namespace_connect,
@@ -624,6 +625,18 @@ class LanceNamespaceDBConnection(DBConnection):
namespace_path = []
LOOP.run(self._inner.drop_table(name, namespace_path=namespace_path))
@override
def drop_table_async(
self, name: str, namespace_path: Optional[List[str]] = None
) -> Job:
"""Start dropping a table and return its cleanup job."""
if namespace_path is None:
namespace_path = []
job = LOOP.run(
self._inner.drop_table_async(name, namespace_path=namespace_path)
)
return Job(job if isinstance(job, AsyncJob) else AsyncJob(job))
@override
def rename_table(
self,
@@ -1134,6 +1147,14 @@ class AsyncLanceNamespaceDBConnection:
namespace_path = []
await self._inner.drop_table(name, namespace_path=namespace_path)
async def drop_table_async(
self, name: str, namespace_path: Optional[List[str]] = None
) -> AsyncJob:
"""Start dropping a table and return its cleanup job."""
if namespace_path is None:
namespace_path = []
return await self._inner.drop_table_async(name, namespace_path=namespace_path)
async def rename_table(
self,
cur_name: str,
+11 -1
View File
@@ -23,7 +23,7 @@ import pyarrow as pa
from ..common import DATA
from ..db import DBConnection, LOOP
from ..job import Job
from ..job import AsyncJob, Job
if TYPE_CHECKING:
from .._lancedb import JobDescription, JobInfo
@@ -663,6 +663,16 @@ class RemoteDBConnection(DBConnection):
namespace_path = []
LOOP.run(self._conn.drop_table(name, namespace_path=namespace_path))
@override
def drop_table_async(
self, name: str, namespace_path: Optional[List[str]] = None
) -> Job:
"""Start dropping a table and return its cleanup job."""
if namespace_path is None:
namespace_path = []
job = LOOP.run(self._conn.drop_table_async(name, namespace_path=namespace_path))
return Job(job if isinstance(job, AsyncJob) else AsyncJob(job))
@override
def rename_table(
self,
+13 -1
View File
@@ -968,9 +968,21 @@ class RemoteTable(Table):
def count_rows(self, filter: Optional[str] = None) -> int:
return LOOP.run(self._table.count_rows(filter))
def add_columns(self, transforms: Dict[str, str]) -> AddColumnsResult:
def add_columns(
self,
transforms: Dict[str, str] | None = None,
*,
computed: Dict[str, str] | None = None,
) -> AddColumnsResult:
if computed:
raise NotImplementedError(
"computed columns are supported only on local tables"
)
return LOOP.run(self._table.add_columns(transforms))
def refresh_column(self, column: str):
raise NotImplementedError("computed columns are supported only on local tables")
def alter_columns(
self, *alterations: Iterable[Dict[str, str]]
) -> AlterColumnsResult:
+315 -27
View File
@@ -11,6 +11,11 @@ Provides StreamingDataset, a PyTorch IterableDataset that guarantees:
- **Resumability**: state_dict / load_state_dict capture per-split consumption
counts so training can resume from an exact mid-epoch position even when the
distributed topology changes between runs.
Transform failures on bad rows (e.g. nulls or NaNs from incomplete data) can
be tolerated with ``on_transform_error="skip"``; see the parameter
documentation on StreamingDataset for how this interacts with the guarantees
above.
"""
import ctypes
@@ -22,7 +27,7 @@ import time
from collections import deque
from concurrent.futures import ThreadPoolExecutor
from multiprocessing import RawArray
from typing import Any, Callable, Iterator, Optional
from typing import Any, Callable, Iterator, Optional, Union
from torch.utils.data import IterableDataset, get_worker_info
@@ -127,6 +132,49 @@ class StreamingDataset(IterableDataset):
Maximum number of transforms to run concurrently. Must be greater
than zero. When ``None`` (the default), uses ``os.cpu_count()`` or 1
when the CPU count is unavailable.
on_transform_error:
What to do when the transform raises an exception:
- ``"raise"`` (the default): the exception propagates and iteration
aborts.
- ``"skip"``: the failing rows are dropped and iteration continues.
- ``"warn"``: like ``"skip"``, but a warning is logged for each
failing batch.
- a callable ``handler(exc) -> bool``: called with the exception;
return ``True`` to skip the failing rows or ``False`` to re-raise.
Useful to skip only expected error types (compatible with
``webdataset.handlers`` style handlers).
When a batch fails, the transform is re-invoked on each single-row
slice of the batch so that only the rows that actually fail are
dropped. Transforms should therefore be deterministic and accept
batches of any size (including one row). Skipped rows are counted in
``rows_skipped``.
Skipping weakens the elastic-determinism guarantee at the end of the
epoch: splits that lose more rows than others run dry earlier, and
each rank's iterator ends at the last cycle where every split *it
owns* still has a row. Because bad rows are not distributed evenly
across splits, this means one rank's iterator can yield noticeably
fewer or more steps than another rank's *in the same run* — there is
no cross-rank coordination that stops every rank at the same global
step. This is generally safe for asynchronous or single-rank use,
but synchronous distributed training (e.g. ranks that call
``all_reduce`` every step) can hang or deadlock if one rank's
iterator is exhausted while others are still stepping; callers doing
synchronous multi-rank training with ``on_transform_error != "raise"``
are responsible for their own cross-rank stopping mechanism (e.g.
broadcasting a stop signal on ``StopIteration``). The final few
global steps can also differ across topologies (bounded by the skew
in bad-row counts across splits). The sequence of samples yielded
from each split remains deterministic. Mid-epoch
checkpoints remain exact provided the transform fails
deterministically; in multi-rank training each rank must save its
own ``state_dict`` and the states must be combined with
``merge_state_dicts`` before resuming on a different topology.
Prefer the ``filter`` parameter when bad rows can be expressed as a
SQL predicate (e.g. ``"col IS NOT NULL"``) — filtering happens before
splits are built, so every guarantee is fully preserved.
worker_info_override:
If set, used in place of ``torch.utils.data.get_worker_info()`` to
determine the DataLoader worker assignment. Intended for unit tests
@@ -152,6 +200,7 @@ class StreamingDataset(IterableDataset):
filter: Optional[str] = None,
transform: Optional[Callable] = None,
transform_parallelism: Optional[int] = None,
on_transform_error: Union[str, Callable[[Exception], bool]] = "raise",
connection_factory: Optional[Callable[[str], Any]] = None,
worker_info_override=None,
):
@@ -167,6 +216,13 @@ class StreamingDataset(IterableDataset):
)
if transform_parallelism is not None and transform_parallelism <= 0:
raise ValueError("transform_parallelism must be greater than 0")
if on_transform_error not in ("raise", "skip", "warn") and not callable(
on_transform_error
):
raise ValueError(
"on_transform_error must be 'raise', 'skip', 'warn', or a "
f"callable, got {on_transform_error!r}"
)
self._table = table
self._num_splits = num_splits
@@ -182,6 +238,7 @@ class StreamingDataset(IterableDataset):
self._filter = filter
self._transform = transform
self._transform_parallelism = transform_parallelism
self._on_transform_error = on_transform_error
self._connection_factory = connection_factory
self._worker_info_override = worker_info_override
@@ -199,19 +256,28 @@ class StreamingDataset(IterableDataset):
# in the main process. RawArray is picklable via the forkserver
# reduction protocol so it survives the dataset pickle round-trip.
# Layout: [unscanned_rows, raw_rows, cooked_rows, consumed_rows,
# bytes_loaded, fetch_time_us, transform_time_us]
self._worker_stats: RawArray = RawArray(ctypes.c_int64, 7)
# bytes_loaded, fetch_time_us, transform_time_us,
# rows_skipped]
self._worker_stats: RawArray = RawArray(ctypes.c_int64, 8)
# Cumulative bytes of Arrow buffer data fetched across all iterations.
self._bytes_loaded: int = 0
# Cumulative seconds spent in LanceDB I/O and in transform functions.
self._fetch_time: float = 0.0
self._transform_time: float = 0.0
# Cumulative rows dropped by on_transform_error across all iterations.
self._rows_skipped: int = 0
# Number of samples each split has already been consumed. At global
# step boundaries all splits have consumed this many samples, so a
# single scalar captures the topology-independent checkpoint state.
self._resume_offset: int = 0
# Permutation position each split has consumed through, keyed by
# global split index. Equal to _resume_offset for every split unless
# on_transform_error skipped rows, in which case skipped positions
# push the watermark of the affected splits further ahead. Splits
# this instance has never iterated have no entry.
self._resume_positions: dict[int, int] = {}
# Build the permutation table once, deterministically.
builder = permutation_builder(table)
@@ -275,6 +341,7 @@ class StreamingDataset(IterableDataset):
# Set identity transform on each Permutation so __getitems__ returns
# the raw RecordBatch. Stage 2 applies the real transform.
permutations: list[Permutation] = []
initial_positions: list[int] = []
for split_idx in my_splits:
perm = Permutation.from_tables(
self._table, self._perm_table, split=split_idx
@@ -282,14 +349,20 @@ class StreamingDataset(IterableDataset):
if self._columns is not None:
perm = perm.select_columns(self._columns)
perm = perm.with_transform(lambda batch: batch)
if self._resume_offset > 0:
perm = perm.with_skip(self._resume_offset)
start_pos = self._resume_positions.get(split_idx, self._resume_offset)
if start_pos > 0:
perm = perm.with_skip(start_pos)
initial_positions.append(start_pos)
permutations.append(perm)
n = len(permutations)
split_sizes = [perm.num_rows for perm in permutations]
initial_offset = self._resume_offset
local_consumed = [0] * n
# Permutation position each split has consumed through (absolute,
# i.e. counted from the start of the unskipped split). Runs ahead of
# initial + local_consumed when rows are skipped.
pos_consumed = list(initial_positions)
batch_size = self._read_batch_size
max_prefetch = self._prefetch_batches
@@ -302,12 +375,14 @@ class StreamingDataset(IterableDataset):
self._transform if self._transform is not None else Transforms.arrow2python
)
# Per-split pipeline state.
# Per-split pipeline state. Batches are paired with the absolute
# permutation position of their first row so that skipped rows can be
# accounted for in pos_consumed.
fetch_head = [0] * n
io_pending = [deque() for _ in range(n)] # Future[RecordBatch]
raw_batches = [deque() for _ in range(n)] # RecordBatch — fetched, awaiting tx
tx_pending = [deque() for _ in range(n)] # Future[list[Any]]
cooked = [deque() for _ in range(n)] # rows ready to yield
io_pending = [deque() for _ in range(n)] # (abs_start, Future[RecordBatch])
raw_batches = [deque() for _ in range(n)] # (abs_start, RecordBatch)
tx_pending = [deque() for _ in range(n)] # Future[list[(abs_pos, row)]]
cooked = [deque() for _ in range(n)] # (abs_pos, row) ready to yield
# Limit simultaneous transforms to transform_workers across all splits.
tx_semaphore = threading.Semaphore(transform_workers)
@@ -330,7 +405,8 @@ class StreamingDataset(IterableDataset):
fetch_head[i] += fetch
perm_i = permutations[i]
indices = list(range(start, start + fetch))
io_pending[i].append(io_pool.submit(_io_call, perm_i, indices))
abs_start = initial_positions[i] + start
io_pending[i].append((abs_start, io_pool.submit(_io_call, perm_i, indices)))
def _fill_io(i: int) -> None:
while len(io_pending[i]) < max_prefetch and fetch_head[i] < split_sizes[i]:
@@ -338,15 +414,72 @@ class StreamingDataset(IterableDataset):
def _drain_io(i: int) -> None:
"""Move completed I/O futures into raw_batches non-blockingly."""
while io_pending[i] and io_pending[i][0].done():
raw_batches[i].append(io_pending[i].popleft().result())
while io_pending[i] and io_pending[i][0][1].done():
abs_start, fut = io_pending[i].popleft()
raw_batches[i].append((abs_start, fut.result()))
# ── Stage 2 helpers ───────────────────────────────────────────────────
def _tx_call_guarded(batch):
on_error = self._on_transform_error
def _should_skip(exc: Exception) -> bool:
if on_error == "raise":
return False
if callable(on_error):
return bool(on_error(exc))
return True # "skip" or "warn"
def _check_row_count(rows: list, num_rows: int) -> None:
if len(rows) != num_rows:
raise ValueError(
f"transform returned {len(rows)} rows for a batch of "
f"{num_rows}; transforms must return exactly one output "
"row per input row. To drop bad rows, raise inside the "
"transform and pass on_transform_error='skip'."
)
def _transform_isolated(abs_start, batch, batch_exc):
"""Re-run the transform on single-row slices, dropping failures."""
out = []
skipped = 0
first_exc = None
for j in range(batch.num_rows):
try:
rows = list(final_transform(batch.slice(j, 1)))
except Exception as exc:
if not _should_skip(exc):
raise
skipped += 1
if first_exc is None:
first_exc = exc
continue
_check_row_count(rows, 1)
out.append((abs_start + j, rows[0]))
self._rows_skipped += skipped
if skipped and on_error == "warn":
logger.warning(
"Skipped %d of %d rows whose transform failed (first error: %r)",
skipped,
batch.num_rows,
first_exc if first_exc is not None else batch_exc,
)
return out
def _transform_batch(abs_start, batch):
"""Apply the transform, returning [(abs_pos, row), ...]."""
try:
rows = list(final_transform(batch))
except Exception as exc:
if not _should_skip(exc):
raise
return _transform_isolated(abs_start, batch, exc)
_check_row_count(rows, batch.num_rows)
return [(abs_start + j, row) for j, row in enumerate(rows)]
def _tx_call_guarded(abs_start, batch):
try:
t0 = time.perf_counter()
result = final_transform(batch)
result = _transform_batch(abs_start, batch)
self._transform_time += time.perf_counter() - t0
return result
finally:
@@ -355,8 +488,8 @@ class StreamingDataset(IterableDataset):
def _try_submit_tx(i: int) -> None:
"""Submit transforms for raw_batches[i] up to available capacity."""
while raw_batches[i] and tx_semaphore.acquire(blocking=False):
batch = raw_batches[i].popleft()
tx_pending[i].append(tx_pool.submit(_tx_call_guarded, batch))
abs_start, batch = raw_batches[i].popleft()
tx_pending[i].append(tx_pool.submit(_tx_call_guarded, abs_start, batch))
def _drain_tx(i: int) -> None:
"""Move completed transform futures into cooked non-blockingly."""
@@ -384,11 +517,14 @@ class StreamingDataset(IterableDataset):
# Acquire a transform slot (may block briefly if all
# transform_workers are busy with other splits).
tx_semaphore.acquire()
batch = raw_batches[i].popleft()
tx_pending[i].append(tx_pool.submit(_tx_call_guarded, batch))
abs_start, batch = raw_batches[i].popleft()
tx_pending[i].append(
tx_pool.submit(_tx_call_guarded, abs_start, batch)
)
elif io_pending[i]:
# Block on the oldest in-flight I/O fetch.
raw_batches[i].append(io_pending[i].popleft().result())
abs_start, fut = io_pending[i].popleft()
raw_batches[i].append((abs_start, fut.result()))
_advance(i)
else:
break # split exhausted
@@ -407,15 +543,28 @@ class StreamingDataset(IterableDataset):
_fill_io(i)
while True:
# Stop when any split is exhausted (all exhaust
# simultaneously: equal split sizes + round-robin).
if any(local_consumed[i] >= split_sizes[i] for i in range(n)):
# A cycle only runs if every split can still produce a
# row. Without skips all splits exhaust simultaneously
# (equal split sizes + round-robin); when
# on_transform_error drops rows a split can run dry
# early, ending the epoch at the last complete cycle.
# This check only sees splits owned by this rank/worker
# (my_splits) — there is no cross-rank coordination, so
# a different rank with fewer skipped rows keeps going;
# see the on_transform_error docstring.
exhausted = False
for i in range(n):
_ensure_cooked(i)
if not cooked[i]:
exhausted = True
break
if exhausted:
break
for i in range(n):
_ensure_cooked(i)
row = cooked[i].popleft()
pos, row = cooked[i].popleft()
local_consumed[i] += 1
pos_consumed[i] = pos + 1
_advance(i)
# After the last split in each cycle: update the
@@ -424,21 +573,39 @@ class StreamingDataset(IterableDataset):
# even when __iter__ runs in a worker process.
if i == n - 1:
self._resume_offset = initial_offset + local_consumed[i]
for j, split_idx in enumerate(my_splits):
self._resume_positions[split_idx] = pos_consumed[j]
ws = self._worker_stats
ws[0] = sum(
split_sizes[j] - fetch_head[j] for j in range(n)
)
ws[1] = sum(
batch.num_rows for q in raw_batches for batch in q
batch.num_rows
for q in raw_batches
for _, batch in q
)
ws[2] = sum(len(q) for q in cooked)
ws[3] = sum(local_consumed)
ws[4] = self._bytes_loaded
ws[5] = int(self._fetch_time * 1_000_000)
ws[6] = int(self._transform_time * 1_000_000)
ws[7] = self._rows_skipped
yield row
finally:
# Final stats flush: the per-cycle write above never runs
# when iteration ends mid-cycle (e.g. a split whose rows
# were all skipped before completing a single cycle), so
# counters like rows_skipped would otherwise be stale.
ws = self._worker_stats
ws[0] = sum(split_sizes[j] - fetch_head[j] for j in range(n))
ws[1] = 0 # queue-depth properties document 0 when idle
ws[2] = 0
ws[3] = sum(local_consumed)
ws[4] = self._bytes_loaded
ws[5] = int(self._fetch_time * 1_000_000)
ws[6] = int(self._transform_time * 1_000_000)
ws[7] = self._rows_skipped
self._raw_batches_ref = None
self._cooked_ref = None
self._fetch_head_ref = None
@@ -492,7 +659,7 @@ class StreamingDataset(IterableDataset):
batches. Returns 0 when not iterating.
"""
if self._raw_batches_ref is not None:
return sum(batch.num_rows for q in self._raw_batches_ref for batch in q)
return sum(batch.num_rows for q in self._raw_batches_ref for _, batch in q)
return int(self._worker_stats[1])
@property
@@ -522,6 +689,19 @@ class StreamingDataset(IterableDataset):
)
return int(self._worker_stats[0])
@property
def rows_skipped(self) -> int:
"""Number of rows dropped because their transform raised an exception.
Only ever non-zero when ``on_transform_error`` is set to ``"skip"``,
``"warn"``, or a callable that returned ``True``. Accumulates across
multiple iterations of the same dataset instance and is never reset
automatically.
"""
if self._raw_batches_ref is not None:
return self._rows_skipped
return int(self._worker_stats[7])
@property
def consumed_rows(self) -> int:
"""Number of rows already yielded to the caller across all splits.
@@ -587,12 +767,27 @@ class StreamingDataset(IterableDataset):
every split has been consumed the same number of times (by the
round-robin design), so the per-split count is a single uniform value
that is identical across all ranks and DataLoader workers.
``positions_consumed_per_split`` records how far into each split's
permutation iteration has advanced. It only differs from
``samples_consumed_per_split`` when ``on_transform_error`` skipped
rows, in which case entries are exact for the splits this instance
iterated and a lower bound (the sample count) for splits owned by
other ranks or workers. Combine the state dicts from all ranks with
[merge_state_dicts][lancedb.streaming.StreamingDataset.merge_state_dicts]
to recover the exact value for every split before resuming on a
different topology.
"""
positions = [
self._resume_positions.get(split, self._resume_offset)
for split in range(self._num_splits)
]
return {
"shuffle_seed": self._shuffle_seed,
"num_splits": self._num_splits,
"epoch": self._epoch,
"samples_consumed_per_split": [self._resume_offset] * self._num_splits,
"positions_consumed_per_split": positions,
}
def load_state_dict(self, state: dict) -> None:
@@ -618,3 +813,96 @@ class StreamingDataset(IterableDataset):
self._resume_offset = consumed[0] if consumed else 0
else:
self._resume_offset = int(consumed)
# Older checkpoints predate positions_consumed_per_split; without
# skipped rows positions equal sample counts, so falling back to
# _resume_offset (the .get default in __iter__) is exact.
positions = state.get("positions_consumed_per_split")
if positions is None:
self._resume_positions = {}
else:
self._resume_positions = {
split: int(pos) for split, pos in enumerate(positions)
}
@staticmethod
def merge_state_dicts(states: list[dict]) -> dict:
"""Merge state dicts saved by different ranks into one exact state.
Only needed when ``on_transform_error`` skips rows in multi-rank
training: each rank then knows the exact permutation position only for
its own splits, and records a lower bound for the rest. Because
exactly one rank owns each split, the elementwise maximum across all
ranks' ``positions_consumed_per_split`` recovers the exact position of
every split. Without skipped rows every rank's state is already
identical and merging is a no-op.
Raises ``ValueError`` if the states are empty or were not produced by
the same run (mismatched seed, split count, epoch, or sample counts).
The merge is always all-to-all and topology-agnostic: collect the
``state_dict()`` from every rank of the *previous* run into one list,
merge that whole list, and hand the identical merged result to every
rank of the *next* run — regardless of whether the rank count grew,
shrank, or stayed the same. There is no pairwise or subset merging
step, because each split's exact position is only known to whichever
rank owned that split, and the elementwise maximum needs every rank's
contribution to be correct.
For example, checkpointing 8 ranks and resuming on 4 (the same
pattern applies when growing, e.g. 4 ranks resuming on 8)::
states = [ds.state_dict() for ds in previous_run_datasets] # 8
merged = StreamingDataset.merge_state_dicts(states)
for ds in resumed_datasets: # now only 4 ranks
ds.load_state_dict(merged) # same dict on every rank
The rank count on either side never affects the merge itself, since
``merge_state_dicts`` only cares about the list of states it is
given. Each split's position is recovered by elementwise maximum;
here rank 0 owned split 0 (and skipped two rows there) while rank 1
owned split 1 (and skipped one row):
>>> rank0 = {
... "shuffle_seed": 0, "num_splits": 2, "epoch": 0,
... "samples_consumed_per_split": [3, 3],
... "positions_consumed_per_split": [5, 3],
... }
>>> rank1 = {
... "shuffle_seed": 0, "num_splits": 2, "epoch": 0,
... "samples_consumed_per_split": [3, 3],
... "positions_consumed_per_split": [3, 4],
... }
>>> merged = StreamingDataset.merge_state_dicts([rank0, rank1])
>>> merged["positions_consumed_per_split"]
[5, 4]
"""
if not states:
raise ValueError("merge_state_dicts requires at least one state dict")
first = states[0]
for state in states[1:]:
for key in ("shuffle_seed", "num_splits", "epoch"):
if state[key] != first[key]:
raise ValueError(
f"{key} mismatch across state dicts: "
f"{state[key]} != {first[key]}"
)
if (
state["samples_consumed_per_split"]
!= first["samples_consumed_per_split"]
):
raise ValueError(
"samples_consumed_per_split mismatch across state dicts; "
"state_dict() must be called at the same global step "
"boundary on every rank"
)
merged = dict(first)
all_positions = [
state.get(
"positions_consumed_per_split", state["samples_consumed_per_split"]
)
for state in states
]
merged["positions_consumed_per_split"] = [
max(per_split) for per_split in zip(*all_positions)
]
return merged
+148 -8
View File
@@ -177,6 +177,7 @@ if TYPE_CHECKING:
CompactionStats,
Tag,
AddColumnsResult,
RefreshColumnResult,
AddResult,
AlterColumnsResult,
UpdateFieldMetadataResult,
@@ -1985,7 +1986,14 @@ class Table(ABC):
@abstractmethod
def add_columns(
self, transforms: Dict[str, str] | pa.Field | List[pa.Field] | pa.Schema
self,
transforms: Dict[str, str]
| pa.Field
| List[pa.Field]
| pa.Schema
| None = None,
*,
computed: Dict[str, str] | None = None,
):
"""
Add new columns with defined values.
@@ -1999,11 +2007,68 @@ class Table(ABC):
Alternatively, a pyarrow Field or Schema can be provided to add
new columns with the specified data types. The new columns will
be initialized with null values.
computed: Dict[str, str], optional
A map of column name to a SQL expression defining the column. The
column's type and inputs are derived from the expression, so no
data type is supplied.
Unlike ``transforms``, the expression is stored rather than
evaluated now: the column is committed with no values, and rows get
them from [`refresh_column`][lancedb.table.Table.refresh_column].
Declaring one therefore costs the same on a large table as on an
empty one.
A refresh does not revisit rows it has already filled, so mutating
an input leaves the value computed at fill time; recomputing means
dropping the column and declaring it again. While a declaration
reads a column, that column cannot be renamed, retyped or dropped.
Local tables only; LanceDB Cloud and Enterprise raise
``NotImplementedError``. Cannot be combined with ``transforms``.
Returns
-------
AddColumnsResult
version: the new version number of the table after adding columns.
Examples
--------
>>> import lancedb
>>> db = lancedb.connect("./.lancedb")
>>> table = db.create_table("computed_demo", [{"x": 1}, {"x": 2}])
>>> table.add_columns(computed={"doubled": "x * 2"})
AddColumnsResult(version=2)
>>> table.refresh_column("doubled")
RefreshColumnResult(rows_filled=2, version=3)
>>> table.to_arrow().sort_by("x").to_pandas()
x doubled
0 1 2
1 2 4
"""
@abstractmethod
def refresh_column(self, column: str) -> "RefreshColumnResult":
"""
Fill the rows of a computed column that hold no value yet.
Declared with ``add_columns(computed=...)``, a column starts empty and
gets its values here. Rows appended since the last refresh are filled
by the next one; rows already filled are left as they are, so the call
is idempotent and does not observe a mutated input.
Local tables only; LanceDB Cloud and Enterprise raise
``NotImplementedError``.
Parameters
----------
column: str
The name of the computed column to fill.
Returns
-------
RefreshColumnResult
rows_filled: the number of rows given a value.
version: the new version number of the table.
"""
@abstractmethod
@@ -4014,9 +4079,21 @@ class LanceTable(Table):
return LOOP.run(self._table.index_stats(index_name))
def add_columns(
self, transforms: Dict[str, str] | pa.field | List[pa.field] | pa.Schema
self,
transforms: Dict[str, str]
| pa.field
| List[pa.field]
| pa.Schema
| None = None,
*,
computed: Dict[str, str] | None = None,
) -> AddColumnsResult:
return LOOP.run(self._table.add_columns(transforms))
return LOOP.run(self._table.add_columns(transforms, computed=computed))
def refresh_column(self, column: str) -> "RefreshColumnResult":
"""Fill a computed column's unfilled rows. See
[`AsyncTable.refresh_column`][lancedb.AsyncTable.refresh_column]."""
return LOOP.run(self._table.refresh_column(column))
def alter_columns(
self, *alterations: Iterable[Dict[str, str]]
@@ -4751,6 +4828,13 @@ class AsyncTable:
via [`set_unenforced_primary_key`]; bucket sharding additionally
requires it to be the single column being bucketed.
By default the MemWAL maintains every index on the table, resolved
here — a snapshot, so an index created afterwards needs the spec unset
and set again. This fails if one cannot be maintained; name the set
with ``with_maintained_indexes`` to install anyway. That pins an exact
set (a still-building index is rejected, not omitted); ``[]`` maintains
none.
Parameters
----------
spec : LsmWriteSpec
@@ -4777,9 +4861,9 @@ class AsyncTable:
Returns ``None`` when the MemWAL LSM write path is not enabled (no
spec has been set, or it was removed with `unset_lsm_write_spec`).
The returned spec — including its ``maintained_indexes`` and
``writer_config_defaults`` — mirrors what was passed to
`set_lsm_write_spec`.
The returned spec mirrors what was passed to `set_lsm_write_spec`,
except that ``maintained_indexes`` always reports the concrete list
resolved when the spec was set — ``None`` never round-trips.
"""
return await self._inner.get_lsm_write_spec()
@@ -5924,7 +6008,14 @@ class AsyncTable:
return await self._inner.update(updates_sql, where)
async def add_columns(
self, transforms: dict[str, str] | pa.field | List[pa.field] | pa.Schema
self,
transforms: dict[str, str]
| pa.field
| List[pa.field]
| pa.Schema
| None = None,
*,
computed: dict[str, str] | None = None,
) -> AddColumnsResult:
"""
Add new columns with defined values.
@@ -5937,6 +6028,21 @@ class AsyncTable:
each row in the table, and can reference existing columns.
Alternatively, you can pass a pyarrow field or schema to add
new columns with NULLs.
computed: Dict[str, str], optional
A map of column name to a SQL expression defining the column. The
column's type and inputs are derived from the expression.
Unlike ``transforms``, the expression is stored rather than
evaluated now: the column is committed with no values, and rows get
them from
[`refresh_column`][lancedb.table.AsyncTable.refresh_column].
A refresh does not revisit rows it has already filled, so mutating
an input leaves the value computed at fill time. While a
declaration reads a column, that column cannot be renamed, retyped
or dropped.
Local tables only. Cannot be combined with ``transforms``.
Returns
-------
@@ -5950,11 +6056,43 @@ class AsyncTable:
{isinstance(f, pa.Field) for f in transforms}
):
transforms = pa.schema(transforms)
if computed:
if transforms:
raise ValueError(
"add_columns cannot take both transforms and computed columns"
)
return await self._inner.add_computed_columns(list(computed.items()))
if transforms is None:
raise ValueError("add_columns requires transforms or computed columns")
if isinstance(transforms, pa.Schema):
return await self._inner.add_columns_with_schema(transforms)
else:
return await self._inner.add_columns(list(transforms.items()))
async def refresh_column(self, column: str) -> RefreshColumnResult:
"""
Fill the rows of a computed column that hold no value yet.
Declared with ``add_columns(computed=...)``, a column starts empty and
gets its values here. Rows appended since the last refresh are filled
by the next one; rows already filled are left as they are, so the call
is idempotent and does not observe a mutated input.
Local tables only; LanceDB Cloud and Enterprise raise
``NotImplementedError``.
Parameters
----------
column: str
The name of the computed column to fill.
Returns
-------
RefreshColumnResult
The number of rows filled and the new version of the table.
"""
return await self._inner.refresh_column(column)
async def alter_columns(
self, *alterations: Iterable[dict[str, Any]]
) -> AlterColumnsResult:
@@ -6415,7 +6553,9 @@ class TableStatistics:
Attributes
----------
total_bytes: int
The total number of bytes in the table.
The total size, in bytes, of the table's data files, index files, and
overlay files. Read from the manifest, so this excludes deletion files
and manifests.
num_rows: int
The total number of rows in the table.
num_indices: int
+16 -3
View File
@@ -755,8 +755,7 @@ def test_delete_table(tmp_db: lancedb.DBConnection):
assert tmp_db.table_names() == []
@pytest.mark.asyncio
async def test_delete_table_async(tmp_db: lancedb.DBConnection):
def test_drop_table_async(tmp_db: lancedb.DBConnection):
data = pd.DataFrame(
{
"vector": [[3.1, 4.1], [5.9, 26.5]],
@@ -772,7 +771,10 @@ async def test_delete_table_async(tmp_db: lancedb.DBConnection):
assert tmp_db.table_names() == ["test"]
tmp_db.drop_table("test")
job = tmp_db.drop_table_async("test")
assert job.id is None
assert job.status() == "finished"
job.wait()
assert tmp_db.table_names() == []
tmp_db.create_table("test", data=data)
@@ -781,6 +783,17 @@ async def test_delete_table_async(tmp_db: lancedb.DBConnection):
tmp_db.drop_table("does_not_exist", ignore_missing=True)
@pytest.mark.asyncio
async def test_drop_table_async_connection(tmp_db_async: lancedb.AsyncConnection):
await tmp_db_async.create_table("test", data=pa.table({"id": [1, 2]}))
job = await tmp_db_async.drop_table_async("test")
assert job.id is None
assert await job.status() == "finished"
await job.wait()
assert await tmp_db_async.table_names() == []
def test_drop_database(tmp_db: lancedb.DBConnection):
data = pd.DataFrame(
{
@@ -1456,6 +1456,408 @@ def test_shuffle_clump_size_yields_all_rows(lance_table):
)
# ---------------------------------------------------------------------------
# on_transform_error tests
# ---------------------------------------------------------------------------
class BadRowError(ValueError):
"""Raised by the failing transforms below when a batch contains a bad id."""
def _failing_transform(bad_ids: set):
"""A transform that raises BadRowError whenever the batch has a bad id.
Raises on the full batch and on any single-row slice containing a bad id,
so per-row isolation drops exactly the bad rows.
"""
def transform(batch: pa.RecordBatch) -> list:
ids = batch.column("id").to_pylist()
bad = sorted(set(ids) & bad_ids)
if bad:
raise BadRowError(f"bad ids in batch: {bad}")
return [{"id": i} for i in ids]
return transform
def _sequential_split_members(table) -> list[list[int]]:
"""Return each split's ids in yield order for shuffle=False.
With a single rank and no workers the round-robin yields one row per split
per cycle, so item k of a clean run belongs to split k % NUM_SPLITS.
"""
ds = StreamingDataset(table, num_splits=NUM_SPLITS, shuffle=False)
members: list[list[int]] = [[] for _ in range(NUM_SPLITS)]
for k, row in enumerate(ds):
members[k % NUM_SPLITS].append(row["id"])
return members
def test_on_transform_error_default_raises(lance_table):
"""By default a transform exception propagates and aborts iteration."""
ds = StreamingDataset(
lance_table,
num_splits=NUM_SPLITS,
shuffle_seed=SHUFFLE_SEED,
transform=_failing_transform({7}),
)
with pytest.raises(BadRowError):
list(ds)
def test_on_transform_error_invalid_value(lance_table):
with pytest.raises(ValueError, match="on_transform_error"):
StreamingDataset(lance_table, num_splits=NUM_SPLITS, on_transform_error="bogus")
def test_on_transform_error_skip_drops_bad_rows(lance_table):
"""With one bad row per split, 'skip' yields every good row exactly once
and counts the dropped rows in rows_skipped."""
members = _sequential_split_members(lance_table)
bad_ids = {members[i][4] for i in range(NUM_SPLITS)}
ds = StreamingDataset(
lance_table,
num_splits=NUM_SPLITS,
shuffle=False,
transform=_failing_transform(bad_ids),
on_transform_error="skip",
)
assert ds.rows_skipped == 0
ids = [row["id"] for row in ds]
assert sorted(ids) == sorted(set(range(NUM_ROWS)) - bad_ids)
assert ds.rows_skipped == NUM_SPLITS
def test_on_transform_error_skip_uneven_ends_at_last_complete_cycle(lance_table):
"""When one split loses more rows than the others, the epoch ends at the
last cycle where every split still has a row — no crash, no bad rows, and
every step remains one sample per split."""
members = _sequential_split_members(lance_table)
bad_ids = set(members[0][:3]) # all 3 bad rows in split 0
ds = StreamingDataset(
lance_table,
num_splits=NUM_SPLITS,
shuffle=False,
transform=_failing_transform(bad_ids),
on_transform_error="skip",
)
items = [row["id"] for row in ds]
rows_per_split = NUM_ROWS // NUM_SPLITS
expected_cycles = rows_per_split - len(bad_ids)
assert len(items) == expected_cycles * NUM_SPLITS
assert len(set(items)) == len(items), "duplicate samples yielded"
assert not set(items) & bad_ids, "a bad row was yielded"
# Split 0 contributed exactly its surviving rows, in order, one per cycle.
survivors = [i for i in members[0] if i not in bad_ids]
assert items[0::NUM_SPLITS] == survivors[:expected_cycles]
def test_on_transform_error_warn_logs(lance_table, caplog):
"""'warn' skips like 'skip' but logs a warning for the failing batch."""
members = _sequential_split_members(lance_table)
bad_ids = {members[i][3] for i in range(NUM_SPLITS)}
ds = StreamingDataset(
lance_table,
num_splits=NUM_SPLITS,
shuffle=False,
transform=_failing_transform(bad_ids),
on_transform_error="warn",
)
with caplog.at_level(logging.WARNING, logger="lancedb.streaming"):
items = list(ds)
assert len(items) == NUM_ROWS - NUM_SPLITS
assert ds.rows_skipped == NUM_SPLITS
assert "Skipped" in caplog.text
assert "BadRowError" in caplog.text
def test_on_transform_error_callable_selective(lance_table):
"""A callable handler can skip expected errors and re-raise the rest."""
members = _sequential_split_members(lance_table)
bad_ids = {members[i][0] for i in range(NUM_SPLITS)}
handled: list[Exception] = []
def handler(exc: Exception) -> bool:
handled.append(exc)
return isinstance(exc, BadRowError)
ds = StreamingDataset(
lance_table,
num_splits=NUM_SPLITS,
shuffle=False,
transform=_failing_transform(bad_ids),
on_transform_error=handler,
)
items = list(ds)
assert len(items) == NUM_ROWS - NUM_SPLITS
assert handled and all(isinstance(exc, BadRowError) for exc in handled)
def broken_transform(batch: pa.RecordBatch) -> list:
raise TypeError("boom")
ds2 = StreamingDataset(
lance_table,
num_splits=NUM_SPLITS,
shuffle=False,
transform=broken_transform,
on_transform_error=handler,
)
with pytest.raises(TypeError, match="boom"):
list(ds2)
def test_transform_wrong_row_count_raises(lance_table):
"""A transform that returns the wrong number of rows is an error even with
on_transform_error='skip' — silent shrinkage would corrupt accounting."""
def drops_rows(batch: pa.RecordBatch) -> list:
return batch.column("id").to_pylist()[:-1]
ds = StreamingDataset(
lance_table,
num_splits=NUM_SPLITS,
shuffle_seed=SHUFFLE_SEED,
transform=drops_rows,
on_transform_error="skip",
)
with pytest.raises(ValueError, match="one output row per input row"):
list(ds)
def test_skip_deterministic_across_runs(lance_table):
"""With a fixed seed, skipping produces the identical sample sequence on
every run — skips are data-dependent, not run-dependent."""
bad_ids = {5, 17, 46}
def run() -> tuple[list[int], int]:
ds = StreamingDataset(
lance_table,
num_splits=NUM_SPLITS,
shuffle_seed=SHUFFLE_SEED,
transform=_failing_transform(bad_ids),
on_transform_error="skip",
)
return [row["id"] for row in ds], ds.rows_skipped
ids_a, skipped_a = run()
ids_b, skipped_b = run()
assert ids_a == ids_b
assert skipped_a == skipped_b
assert not set(ids_a) & bad_ids
def test_skip_elastic_det_across_world_sizes(lance_table):
"""With equal bad-row counts per split, skipping preserves the full
elastic-determinism guarantee: identical global batches at every step for
every compatible world_size."""
members = _sequential_split_members(lance_table)
bad_ids = {members[i][6] for i in range(NUM_SPLITS)}
def collect(world_size: int) -> list[frozenset[int]]:
micro = GLOBAL_BATCH_SIZE // world_size
iters = [
iter(
StreamingDataset(
lance_table,
num_splits=NUM_SPLITS,
shuffle=False,
rank=rank,
world_size=world_size,
transform=_failing_transform(bad_ids),
on_transform_error="skip",
)
)
for rank in range(world_size)
]
_STOP = object()
batches: list[frozenset[int]] = []
while True:
step_samples: set[int] = set()
exhausted = 0
for it in iters:
for _ in range(micro):
val = next(it, _STOP)
if val is _STOP:
exhausted += 1
break
step_samples.add(val["id"])
if exhausted == len(iters):
break
assert exhausted == 0, (
"Rank iterators exhausted at different steps despite equal "
"bad-row counts per split"
)
batches.append(frozenset(step_samples))
return batches
reference = collect(1)
assert len(reference) == NUM_ROWS // NUM_SPLITS - 1
for ws in (2, 3, 4):
assert collect(ws) == reference, f"world_size={ws} diverged"
def test_resumability_with_skips_same_topology(lance_table):
"""Checkpointing mid-epoch with skipped rows resumes exactly: no sample
repeated, no sample lost, skipped rows stay skipped."""
members = _sequential_split_members(lance_table)
# Uneven skips: positions diverge across splits (2 bad in split 0, 1 in
# split 5), which only a position-based checkpoint can resume exactly.
bad_ids = {members[0][2], members[0][3], members[5][7]}
kwargs = dict(
num_splits=NUM_SPLITS,
shuffle=False,
transform=_failing_transform(bad_ids),
on_transform_error="skip",
)
reference = [row["id"] for row in StreamingDataset(lance_table, **kwargs)]
rows_per_split = NUM_ROWS // NUM_SPLITS
assert len(reference) == (rows_per_split - 2) * NUM_SPLITS
steps = 3
ds = StreamingDataset(lance_table, **kwargs)
it = iter(ds)
consumed = [next(it)["id"] for _ in range(steps * NUM_SPLITS)]
checkpoint = ds.state_dict()
it.close()
# Split 0 skipped positions 2 and 3 within its first 3 yields; split 5's
# bad row is beyond the checkpoint. Everything else is at 3 = the sample
# count.
positions = checkpoint["positions_consumed_per_split"]
assert positions[0] == 5
assert positions[1:] == [3] * (NUM_SPLITS - 1)
assert checkpoint["samples_consumed_per_split"] == [3] * NUM_SPLITS
ds2 = StreamingDataset(lance_table, **kwargs)
ds2.load_state_dict(checkpoint)
resumed = [row["id"] for row in ds2]
assert consumed == reference[: steps * NUM_SPLITS]
assert resumed == reference[steps * NUM_SPLITS :]
def test_resumability_with_skips_elastic_merge(lance_table):
"""Elastic resume with skips: each rank's checkpoint knows exact positions
only for its own splits; merge_state_dicts recovers the global state, and
a run on a different world_size continues exactly."""
members = _sequential_split_members(lance_table)
# Bad rows early in split 0 (rank 0) and split 6 (rank 1 of a ws=2 run) so
# both ranks' position vectors diverge before the checkpoint.
bad_ids = {members[0][0], members[0][2], members[6][1]}
kwargs = dict(
num_splits=NUM_SPLITS,
shuffle=False,
transform=_failing_transform(bad_ids),
on_transform_error="skip",
)
reference = [row["id"] for row in StreamingDataset(lance_table, **kwargs)]
steps = 3
world_size = 2
micro = GLOBAL_BATCH_SIZE // world_size
datasets = [
StreamingDataset(lance_table, rank=rank, world_size=world_size, **kwargs)
for rank in range(world_size)
]
iters = [iter(ds) for ds in datasets]
seen: list[frozenset[int]] = []
for _ in range(steps):
step_samples = set()
for it in iters:
for _ in range(micro):
step_samples.add(next(it)["id"])
seen.append(frozenset(step_samples))
states = [ds.state_dict() for ds in datasets]
for it in iters:
it.close()
merged = StreamingDataset.merge_state_dicts(states)
expected_positions = [3] * NUM_SPLITS
expected_positions[0] = 5 # skipped positions 0 and 2
expected_positions[6] = 4 # skipped position 1
assert merged["positions_consumed_per_split"] == expected_positions
# The first 3 global batches match the world_size=1 reference.
ref_batches = [
frozenset(reference[s * NUM_SPLITS : (s + 1) * NUM_SPLITS])
for s in range(len(reference) // NUM_SPLITS)
]
assert seen == ref_batches[:steps]
# Resume on world_size=1 from the merged state.
ds_resume = StreamingDataset(lance_table, **kwargs)
ds_resume.load_state_dict(merged)
resumed = [row["id"] for row in ds_resume]
assert resumed == reference[steps * NUM_SPLITS :]
def test_rows_skipped_flushed_when_split_entirely_bad(lance_table):
"""A split whose rows all fail never completes a cycle, so the epoch ends
immediately — but rows_skipped must still report the drops after the
iterator exits (the shared-memory counter is flushed on exhaustion)."""
members = _sequential_split_members(lance_table)
bad_ids = set(members[0]) # every row of split 0 is bad
ds = StreamingDataset(
lance_table,
num_splits=NUM_SPLITS,
shuffle=False,
transform=_failing_transform(bad_ids),
on_transform_error="skip",
)
assert list(ds) == []
assert ds.rows_skipped == len(bad_ids)
def test_merge_state_dicts_validates_consistency(lance_table):
ds = StreamingDataset(lance_table, num_splits=NUM_SPLITS, shuffle_seed=SHUFFLE_SEED)
state = ds.state_dict()
other = dict(state, shuffle_seed=SHUFFLE_SEED + 1)
with pytest.raises(ValueError, match="shuffle_seed mismatch"):
StreamingDataset.merge_state_dicts([state, other])
with pytest.raises(ValueError, match="at least one"):
StreamingDataset.merge_state_dicts([])
def test_load_state_dict_without_positions_key(lance_table):
"""Checkpoints from before positions_consumed_per_split existed still
resume exactly (positions equal sample counts when nothing is skipped)."""
reference = [
row["id"]
for row in StreamingDataset(
lance_table, num_splits=NUM_SPLITS, shuffle_seed=SHUFFLE_SEED
)
]
steps = 4
ds = StreamingDataset(lance_table, num_splits=NUM_SPLITS, shuffle_seed=SHUFFLE_SEED)
it = iter(ds)
for _ in range(steps * NUM_SPLITS):
next(it)
checkpoint = ds.state_dict()
it.close()
del checkpoint["positions_consumed_per_split"]
ds2 = StreamingDataset(
lance_table, num_splits=NUM_SPLITS, shuffle_seed=SHUFFLE_SEED
)
ds2.load_state_dict(checkpoint)
resumed = [row["id"] for row in ds2]
assert resumed == reference[steps * NUM_SPLITS :]
def test_num_splits_defaults_to_world_size(lance_table):
"""Omitting num_splits gives world_size splits (one per rank)."""
ds = StreamingDataset(
+20
View File
@@ -631,3 +631,23 @@ def test_url_retrieve_downloads_image():
image_bytes = url_retrieve(image_url)
img = Image.open(io.BytesIO(image_bytes))
assert img.size[0] > 0 and img.size[1] > 0
def test_jina_generate_image_input_dict_local_path(tmp_path):
"""
JinaEmbeddings._generate_image_input_dict must accept a local image path
(str or Path), not just bytes. Previously it crashed with
`AttributeError: 'function' object has no attribute 'urlparse'` on any
str/Path input because it called `urlparse.urlparse(image)` instead of
`urlparse(image)` (urlparse was imported as a function, not a module).
"""
Image = pytest.importorskip("PIL.Image")
from lancedb.embeddings.jinaai import JinaEmbeddings
image_path = tmp_path / "test.png"
Image.new("RGB", (4, 4), color="red").save(image_path, format="PNG")
for image in (str(image_path), image_path):
image_dict = JinaEmbeddings._generate_image_input_dict(image)
assert "image" in image_dict
assert isinstance(image_dict["image"], str) and len(image_dict["image"]) > 0
+11 -4
View File
@@ -83,7 +83,9 @@ def test_lsm_write_spec_repr():
assert s.spec_type == "bucket"
assert s.column == "id"
assert s.num_buckets == 4
assert s.maintained_indexes == []
# A fresh spec defers its maintained set to install time.
assert s.maintained_indexes is None
assert s.with_maintained_indexes([]).maintained_indexes == []
assert "bucket" in repr(s)
assert "id" in repr(s)
assert "4" in repr(s)
@@ -169,18 +171,23 @@ def test_get_lsm_write_spec(tmp_path):
table.unset_lsm_write_spec()
assert table.get_lsm_write_spec() is None
# Identity round-trips (column recovered from the schema).
# Identity round-trips (column recovered from the schema). Leaving the
# maintained set to be inferred picks up the index on the table, so the
# spec reads back naming it rather than as "infer".
table.set_lsm_write_spec(LsmWriteSpec.identity("id"))
spec = table.get_lsm_write_spec()
assert spec.spec_type == "identity"
assert spec.column == "id"
assert spec.maintained_indexes == [idx_name]
table.unset_lsm_write_spec()
# Unsharded round-trips (no routing column).
table.set_lsm_write_spec(LsmWriteSpec.unsharded())
# Unsharded round-trips (no routing column). Opting out is distinct from
# the inferred default.
table.set_lsm_write_spec(LsmWriteSpec.unsharded().with_maintained_indexes([]))
spec = table.get_lsm_write_spec()
assert spec.spec_type == "unsharded"
assert spec.column is None
assert spec.maintained_indexes == []
@pytest.mark.asyncio
+2 -2
View File
@@ -544,7 +544,7 @@ def test_lsm_read_fts_unmaintained_index_errors(tmp_path):
table.create_index("text", config=FTS())
# No maintained indexes: the active memtable FTS arm cannot serve un-compacted
# docs, so the search would silently omit them — reject instead.
table.set_lsm_write_spec(LsmWriteSpec.unsharded())
table.set_lsm_write_spec(LsmWriteSpec.unsharded().with_maintained_indexes([]))
with pytest.raises(Exception, match="maintained"):
table.search("fox", query_type="fts", fts_columns="text").to_arrow()
@@ -631,7 +631,7 @@ def test_lsm_read_vector_unmaintained_index_errors(tmp_path):
)
# Spec with NO maintained indexes: the base vector index's catch-up is untracked,
# so the scanner rejects rather than risk dropping compacted-but-unindexed rows.
table.set_lsm_write_spec(LsmWriteSpec.unsharded())
table.set_lsm_write_spec(LsmWriteSpec.unsharded().with_maintained_indexes([]))
with pytest.raises(Exception, match="maintained"):
table.search([1.0] * VECTOR_DIM).to_arrow()
+43 -1
View File
@@ -3758,7 +3758,8 @@ def test_stats(mem_db: DBConnection):
stats = table.stats()
print(f"{stats=}")
assert stats == {
"total_bytes": 60,
# Full on-disk size of the data file, footer and metadata included.
"total_bytes": 633,
"num_rows": 2,
"num_indices": 0,
"fragment_stats": {
@@ -3776,6 +3777,13 @@ def test_stats(mem_db: DBConnection):
},
}
# Index files count toward total_bytes too (only deletion files and
# manifests are excluded).
table.create_index("id", config=BTree())
stats_with_index = table.stats()
assert stats_with_index["num_indices"] == 1
assert stats_with_index["total_bytes"] > stats["total_bytes"]
def test_create_table_empty_list_with_schema(mem_db: DBConnection):
"""Test creating table with empty list data and schema
@@ -3891,3 +3899,37 @@ async def test_async_search_runs_embedding_on_dedicated_executor(
assert all(name.startswith("lancedb-embedding") for name in captured_threads), (
f"embedding ran off the dedicated executor: {captured_threads}"
)
def test_computed_column_declare_and_refresh(tmp_path):
db = lancedb.connect(tmp_path)
table = db.create_table("computed", [{"x": 1}, {"x": 2}])
table.add_columns(computed={"doubled": "x * 2"})
assert table.to_arrow()["doubled"].to_pylist() == [None, None]
result = table.refresh_column("doubled")
assert result.rows_filled == 2
assert sorted(table.to_arrow()["doubled"].to_pylist()) == [2, 4]
table.add([{"x": 5}])
assert table.refresh_column("doubled").rows_filled == 1
assert sorted(table.to_arrow()["doubled"].to_pylist()) == [2, 4, 10]
def test_computed_column_rejects_transforms_and_computed_together(tmp_path):
db = lancedb.connect(tmp_path)
table = db.create_table("computed_mixed", [{"x": 1}])
with pytest.raises(ValueError):
table.add_columns({"a": "x + 1"}, computed={"b": "x * 2"})
@pytest.mark.asyncio
async def test_computed_column_async(tmp_path):
db = await lancedb.connect_async(tmp_path)
table = await db.create_table("computed_async", [{"x": 3}])
await table.add_columns(computed={"tripled": "x * 3"})
await table.refresh_column("tripled")
assert (await table.to_arrow())["tripled"].to_pylist() == [9]
+17
View File
@@ -346,6 +346,23 @@ impl Connection {
})
}
#[pyo3(signature = (name, namespace_path=None))]
pub fn drop_table_async(
self_: PyRef<'_, Self>,
name: String,
namespace_path: Option<Vec<String>>,
) -> PyResult<Bound<'_, PyAny>> {
let inner = self_.get_inner()?.clone();
let ns_path = namespace_path.unwrap_or_default();
future_into_py(self_.py(), async move {
inner
.drop_table_async(name, &ns_path)
.await
.infer_error()
.map(crate::job::Job::new)
})
}
#[pyo3(signature = (namespace_path=None,))]
pub fn drop_all_tables(
self_: PyRef<'_, Self>,
+1 -1
View File
@@ -289,7 +289,7 @@ struct IvfHnswFlatParams {
target_partition_size: Option<u32>,
}
#[pyclass(get_all)]
#[pyclass(module = "lancedb._lancedb", get_all)]
/// A description of an index currently configured on a column
pub struct IndexConfig {
/// The type of the index
+3 -1
View File
@@ -16,7 +16,8 @@ use query::{FTSQuery, HybridQuery, Query, VectorQuery};
use session::Session;
use table::{
AddColumnsResult, AddResult, AlterColumnsResult, DeleteResult, DropColumnsResult, FtsToken,
LsmWriteSpec, MergeResult, PyBlobFile, Table, UpdateFieldMetadataResult, UpdateResult,
LsmWriteSpec, MergeResult, PyBlobFile, RefreshColumnResult, Table, UpdateFieldMetadataResult,
UpdateResult,
};
pub mod arrow;
@@ -57,6 +58,7 @@ pub fn _lancedb(_py: Python, m: &Bound<'_, PyModule>) -> PyResult<()> {
m.add_class::<VectorQuery>()?;
m.add_class::<RecordBatchStream>()?;
m.add_class::<AddColumnsResult>()?;
m.add_class::<RefreshColumnResult>()?;
m.add_class::<AlterColumnsResult>()?;
m.add_class::<UpdateFieldMetadataResult>()?;
m.add_class::<AddResult>()?;
+1 -1
View File
@@ -11,7 +11,7 @@ use pyo3::{PyResult, pyclass, pymethods};
/// Sessions allow you to configure cache sizes for index and metadata caches,
/// which can significantly impact memory use and performance. They can
/// also be re-used across multiple connections to share the same cache state.
#[pyclass(from_py_object)]
#[pyclass(module = "lancedb._lancedb", from_py_object)]
#[derive(Clone)]
pub struct Session {
pub(crate) inner: Arc<LanceSession>,
+81 -16
View File
@@ -341,12 +341,22 @@ impl From<lancedb::table::MergeResult> for MergeResult {
}
}
/// Render for `__repr__`, so the default reads as Python's `None` rather than
/// Rust's `Some([..])`.
fn fmt_maintained(maintained: &Option<Vec<String>>) -> String {
match maintained {
Some(names) => format!("{:?}", names),
None => "None".to_string(),
}
}
/// Specification selecting Lance's MemWAL LSM-style write path for
/// `merge_insert`.
///
/// Constructed via the `bucket(...)`, `identity(...)`, or `unsharded()`
/// classmethods, then optionally chain `with_maintained_indexes(...)` and
/// `with_writer_config_defaults(...)`.
/// `with_writer_config_defaults(...)`. A fresh spec maintains every index the
/// MemWAL supports, resolved on install.
#[pyclass(from_py_object)]
#[derive(Clone, Debug)]
pub struct LsmWriteSpec {
@@ -386,11 +396,11 @@ impl LsmWriteSpec {
}
}
/// Replace the list of indexes the MemWAL should keep up to date as
/// rows are appended. Each name must reference an index that
/// already exists on the table at the time `set_lsm_write_spec`
/// is called.
pub fn with_maintained_indexes(&self, indexes: Vec<String>) -> Self {
/// Set which indexes the MemWAL maintains. `None` (the default)
/// resolves every supported index on install; a list is verbatim,
/// and an empty list maintains nothing.
#[pyo3(signature = (indexes))]
pub fn with_maintained_indexes(&self, indexes: Option<Vec<String>>) -> Self {
Self {
inner: self.inner.clone().with_maintained_indexes(indexes),
}
@@ -412,23 +422,29 @@ impl LsmWriteSpec {
maintained_indexes,
writer_config_defaults,
} => format!(
"LsmWriteSpec.bucket(column={:?}, num_buckets={}, maintained_indexes={:?}, writer_config_defaults={:?})",
column, num_buckets, maintained_indexes, writer_config_defaults,
"LsmWriteSpec.bucket(column={:?}, num_buckets={}, maintained_indexes={}, writer_config_defaults={:?})",
column,
num_buckets,
fmt_maintained(maintained_indexes),
writer_config_defaults,
),
lancedb::table::LsmWriteSpec::Identity {
column,
maintained_indexes,
writer_config_defaults,
} => format!(
"LsmWriteSpec.identity(column={:?}, maintained_indexes={:?}, writer_config_defaults={:?})",
column, maintained_indexes, writer_config_defaults,
"LsmWriteSpec.identity(column={:?}, maintained_indexes={}, writer_config_defaults={:?})",
column,
fmt_maintained(maintained_indexes),
writer_config_defaults,
),
lancedb::table::LsmWriteSpec::Unsharded {
maintained_indexes,
writer_config_defaults,
} => format!(
"LsmWriteSpec.unsharded(maintained_indexes={:?}, writer_config_defaults={:?})",
maintained_indexes, writer_config_defaults,
"LsmWriteSpec.unsharded(maintained_indexes={}, writer_config_defaults={:?})",
fmt_maintained(maintained_indexes),
writer_config_defaults,
),
}
}
@@ -463,10 +479,10 @@ impl LsmWriteSpec {
}
}
/// Names of indexes the MemWAL should keep up to date during writes.
/// Indexes the MemWAL keeps up to date, or `None` for every supported one.
#[getter]
pub fn maintained_indexes(&self) -> Vec<String> {
self.inner.maintained_indexes().to_vec()
pub fn maintained_indexes(&self) -> Option<Vec<String>> {
self.inner.maintained_indexes().map(<[String]>::to_vec)
}
/// Default `ShardWriter` configuration recorded by this spec.
@@ -494,6 +510,32 @@ pub struct AddColumnsResult {
pub version: u64,
}
#[pyclass(get_all, from_py_object)]
#[derive(Clone, Debug)]
pub struct RefreshColumnResult {
pub rows_filled: u64,
pub version: u64,
}
#[pymethods]
impl RefreshColumnResult {
pub fn __repr__(&self) -> String {
format!(
"RefreshColumnResult(rows_filled={}, version={})",
self.rows_filled, self.version
)
}
}
impl From<lancedb::table::RefreshColumnResult> for RefreshColumnResult {
fn from(result: lancedb::table::RefreshColumnResult) -> Self {
Self {
rows_filled: result.rows_filled,
version: result.version,
}
}
}
#[pymethods]
impl AddColumnsResult {
pub fn __repr__(&self) -> String {
@@ -658,7 +700,7 @@ impl PyBlobFile {
}
}
#[pyclass(get_all, from_py_object)]
#[pyclass(module = "lancedb._lancedb", get_all, from_py_object)]
#[derive(Clone, Debug)]
pub struct FtsToken {
pub text: String,
@@ -1591,6 +1633,29 @@ impl Table {
})
}
pub fn add_computed_columns(
self_: PyRef<'_, Self>,
columns: Vec<(String, String)>,
) -> PyResult<Bound<'_, PyAny>> {
let inner = self_.inner_ref()?.clone();
future_into_py(self_.py(), async move {
let mut builder = inner.add_columns();
for (name, expression) in columns {
builder = builder.computed(name, expression);
}
let result = builder.execute().await.infer_error()?;
Ok(AddColumnsResult::from(result))
})
}
pub fn refresh_column(self_: PyRef<'_, Self>, column: String) -> PyResult<Bound<'_, PyAny>> {
let inner = self_.inner_ref()?.clone();
future_into_py(self_.py(), async move {
let result = inner.refresh_column(column).await.infer_error()?;
Ok(RefreshColumnResult::from(result))
})
}
pub fn add_columns_with_schema(
self_: PyRef<'_, Self>,
schema: PyArrowType<Schema>,