fix(python): sanitize bad vectors before Arrow cast (#3158)

## Problem

`on_bad_vectors="drop"` is supposed to remove invalid vector rows before
write, but for some schema-defined vector columns it can still fail
later during Arrow cast instead of dropping the bad row.

Repro:
```python
class MySchema(LanceModel):
    text: str
    embedding: Vector(16)

table = db.create_table("test", schema=MySchema)
table.add(
    [
        {"text": "hello", "embedding": []},
        {"text": "bar", "embedding": [0.1] * 16},
    ],
    on_bad_vectors="drop",
)
```
Before:
```
RuntimeError
Arrow error: C Data interface error: Invalid: ListType can only be casted to FixedSizeListType if the lists are all the expected size.
```
After:
```
rows 1
texts ['bar']
```
## Solution

Make bad-vector sanitization use schema dimensions before cast, while
keeping the handling scoped to vector columns identified by schema
metadata or existing vector-name heuristics.

This also preserves existing integer vector inputs and avoids applying
on_bad_vectors to unrelated fixed-size float columns.


Fixes #1670

Signed-off-by: yaommen <myanstu@163.com>
This commit is contained in:
yaommen
2026-04-09 00:09:41 +08:00
committed by GitHub
parent a898dc81c2
commit a813ce2f71
3 changed files with 597 additions and 64 deletions
+114 -1
View File
@@ -15,8 +15,10 @@ from lancedb.table import (
_cast_to_target_schema,
_handle_bad_vectors,
_into_pyarrow_reader,
_sanitize_data,
_infer_target_schema,
_merge_metadata,
_sanitize_data,
sanitize_create_table,
)
import pyarrow as pa
import pandas as pd
@@ -304,6 +306,117 @@ def test_handle_bad_vectors_noop():
assert output["vector"] == vector
def test_handle_bad_vectors_updates_reader_schema_for_target_schema():
data = pa.table({"vector": [[1, 2, 3, 4]]})
target_schema = pa.schema([pa.field("vector", pa.list_(pa.float32(), 4))])
output = _handle_bad_vectors(
data.to_reader(),
on_bad_vectors="drop",
target_schema=target_schema,
)
assert output.schema == pa.schema([pa.field("vector", pa.list_(pa.float32()))])
assert output.read_all()["vector"].to_pylist() == [[1.0, 2.0, 3.0, 4.0]]
def test_sanitize_data_keeps_target_field_metadata():
source_field = pa.field(
"vector",
pa.list_(pa.float32(), 2),
metadata={b"source": b"drop-me"},
)
target_field = pa.field(
"vector",
pa.list_(pa.float32(), 2),
metadata={b"target": b"keep-me"},
)
data = pa.table(
{"vector": pa.array([[1.0, 2.0]], type=pa.list_(pa.float32(), 2))},
schema=pa.schema([source_field]),
)
output = _sanitize_data(
data,
target_schema=pa.schema([target_field]),
on_bad_vectors="drop",
).read_all()
assert output.schema.field("vector").metadata == {b"target": b"keep-me"}
def test_sanitize_data_uses_separate_embedding_metadata_for_bad_vectors():
registry = EmbeddingFunctionRegistry.get_instance()
conf = EmbeddingFunctionConfig(
source_column="text",
vector_column="custom_vector",
function=MockTextEmbeddingFunction.create(),
)
metadata = registry.get_table_metadata([conf])
schema = pa.schema(
{
"text": pa.string(),
"custom_vector": pa.list_(pa.float32(), 10),
},
metadata={b"note": b"keep-me"},
)
data = pa.table(
{
"text": ["bad", "good"],
"custom_vector": [[1.0] * 9, [2.0] * 10],
}
)
output = _sanitize_data(
data,
target_schema=schema,
metadata=metadata,
on_bad_vectors="drop",
).read_all()
assert output["text"].to_pylist() == ["good"]
assert output.schema.metadata[b"note"] == b"keep-me"
assert b"embedding_functions" in output.schema.metadata
def test_sanitize_create_table_merges_and_overrides_embedding_metadata():
registry = EmbeddingFunctionRegistry.get_instance()
old_conf = EmbeddingFunctionConfig(
source_column="text",
vector_column="old_vector",
function=MockTextEmbeddingFunction.create(),
)
new_conf = EmbeddingFunctionConfig(
source_column="text",
vector_column="custom_vector",
function=MockTextEmbeddingFunction.create(),
)
metadata = registry.get_table_metadata([new_conf])
schema = pa.schema(
{
"text": pa.string(),
"custom_vector": pa.list_(pa.float32(), 10),
},
metadata=_merge_metadata(
{b"note": b"keep-me"},
registry.get_table_metadata([old_conf]),
),
)
data, schema = sanitize_create_table(
pa.table({"text": ["good"]}),
schema,
metadata=metadata,
on_bad_vectors="drop",
)
assert schema.metadata[b"note"] == b"keep-me"
assert b"embedding_functions" in schema.metadata
assert data.schema.metadata[b"note"] == b"keep-me"
funcs = EmbeddingFunctionRegistry.get_instance().parse_functions(schema.metadata)
assert set(funcs.keys()) == {"custom_vector"}
class TestModel(lancedb.pydantic.LanceModel):
a: Optional[int]
b: Optional[int]