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lancedb/python/python/tests
Prashanth Rao 3b626efa47 fix(python): fill bad vector values element-wise (#3613)
## Summary

Fix `on_bad_vectors="fill"` so it replaces only invalid or missing
vector values instead of replacing the entire vector row.

Fixes #3026.

## Reasoning

The old Python sanitizer detected whether a vector row was bad at row
granularity. For `fill`, it then used that row-level flag to replace the
whole vector with `[fill_value] * dim`. That meant an input like `[1.0,
NaN, 3.0]` became `[0.0, 0.0, 0.0]`, even though the documented and more
useful behavior is to preserve valid values and fill only the bad
element.

I checked whether this should be a Rust-side fix so TypeScript users
would benefit too. Today, Rust core exposes `NaNVectorBehavior::{Error,
Keep}` for rejecting or keeping NaN vectors, while the Python
`on_bad_vectors` API (`error`, `drop`, `fill`, `null`) is implemented in
the Python ingestion sanitizer before data reaches Rust. TypeScript does
not expose the Python `on_bad_vectors="fill"` behavior today. Moving
this exact behavior to Rust would be a broader cross-language API
change, so this PR keeps the fix scoped to the currently affected Python
API.

## What changed

- Added a small helper that fills bad vector rows by preserving valid
elements, replacing NaN elements with `fill_value`, truncating vectors
longer than the expected dimension, and padding short vectors with
`fill_value`.
- Kept the existing fast path unchanged: the helper only runs after bad
vectors are detected and `on_bad_vectors="fill"` is selected.
- Updated sanitizer and table tests to assert element-wise NaN
replacement and short-vector padding for both `create_table` and `add`.

## Validation

- `uv run ruff format .`
- `uv run ruff check .`
- `cd python && uv run --no-sync pytest
python/tests/test_util.py::test_handle_bad_vectors_jagged
python/tests/test_util.py::test_handle_bad_vectors_nan
python/tests/test_table.py::test_create_with_nans
python/tests/test_table.py::test_add_with_nans -vv`

Targeted pytest result: `10 passed`.

## Why this fix is Python-side (and not Rust)

The problematic behavior lives in Python’s `on_bad_vectors` sanitizer,
before data is handed off to Rust. Rust currently only exposes
`NaNVectorBehavior::{Error, Keep}` for add operations, while Python has
the richer `on_bad_vectors={"error","drop","fill","null"}` API.
TypeScript does not currently expose the Python-style fill behavior, so
moving this exact fix into Rust would require designing a broader
cross-language bad-vector handling API.

This PR keeps the change scoped to the existing affected surface:
Python’s `on_bad_vectors="fill"` path. This way, Python users
immediately benefit.
2026-07-14 13:43:17 -07:00
..
2025-01-29 08:27:07 -08:00