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Storage configuration from the connection is embedded only, since a deployment configures its own. Training data loading, PyTorch, embedding functions, pandas, Polars and Pydantic work with local and deployment tables, and the Hugging Face Hub integration is embedded only. A local table cannot be pickled for DataLoader workers, so the PyTorch page says to wrap it in a Permutation; a LazyFrame over a whole table, to_pandas in the LangChain example and to_arrow in the DuckDB note are local only; and query text is embedded in the client for both offerings.
197 lines
7.9 KiB
Plaintext
197 lines
7.9 KiB
Plaintext
---
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title: "PyTorch Integration"
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sidebarTitle: "PyTorch"
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description: Learn how to use LanceDB with PyTorch for training and inference.
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icon: fire
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availability:
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oss: available
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enterprise: available
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summary: >-
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The PyTorch integration works with local, object-storage and deployment
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tables in the Python SDK.
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---
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LanceDB provides a seamless integration with PyTorch for training and inference. This allows you to use LanceDB as a backend for your PyTorch models, and to use PyTorch for training and inference. You can use LanceDB to store your data, and PyTorch to train your models.
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## Quickstart {#quickstart}
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The `Table` class in LanceDB implements a contract for a PyTorch
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[Dataset](https://docs.pytorch.org/docs/stable/data.html#torch.utils.data.Dataset).
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This means you can simply use a LanceDB table in a PyTorch dataloader directly.
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```py Python icon=Python
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import lancedb
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import torch
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import pyarrow as pa
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from lancedb.util import tbl_to_tensor
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mem_db = lancedb.connect("memory://")
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table = mem_db.create_table("test_table", pa.table({"a": range(1000)}))
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# Any LanceDB table can be used as a PyTorch Dataset
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dataloader = torch.utils.data.DataLoader(
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table, batch_size=1024, shuffle=True, collate_fn=tbl_to_tensor
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)
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for batch in dataloader:
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print(batch)
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```
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Although the `Table` class in LanceDB implements the `torch.utils.data.Dataset` interface, you may find that using
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a table [Permutation](/training/data-loading) is more flexible.
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```py Python icon=Python
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from lancedb.permutation import Permutation
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permutation = Permutation.identity(table)
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dataloader = torch.utils.data.DataLoader(permutation)
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```
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## Output Formats {#output-formats}
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By default, a `Table` data loader will emit Arrow data. `collate_fn` is PyTorch's batching hook: PyTorch calls it to
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turn the fetched items into one batch. PyTorch's default collate function only knows how to combine tensors, NumPy
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arrays, numbers, dicts, and lists, so it does not accept Arrow data directly. When using a `Table` directly, pass
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LanceDB's `lancedb.util.tbl_to_tensor` helper as PyTorch's `collate_fn`; it converts numeric Arrow columns into a
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column-major `torch.Tensor` with shape `(columns, rows)`.
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`Permutation` works differently: its default output is a list of Python dicts, which PyTorch's default collate function
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can batch into a dict of tensors. This is usually more convenient when you are getting started. However, there is a
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significant performance penalty converting from Arrow, Lance's internal representation, to this default format. If you
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want the default PyTorch dict-of-tensors behavior, use a `Permutation` as-is; if you want direct Arrow-to-tensor
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conversion, either pass `lancedb.util.tbl_to_tensor` as `collate_fn` with a direct `Table` or configure a `Permutation`
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with one of the transform formats described below.
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To address this, the `Permutation` class provides a set of builtin transform functions that can be applied to map
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the Arrow data in different ways. The `arrow` and `polars` formats will always avoid data copies. However, `numpy`,
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`pandas`, and `torch_col` formats will also avoid data copies in most cases. The `python`, `python_col`, and
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`torch` formats will all require at least one full copy of the data and are the slowest options.
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### Using the torch column format with a torch data loader {#using-the-torch-column-format-with-a-torch-data-loader}
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The `torch_col` format is the most efficient way to convert from Arrow to a `torch.Tensor`. It will convert the
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entire Arrow batch to a _column-major_ `torch.Tensor`. In other words, given C columns and R rows, the resulting
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Tensor will have shape `(C, R)`. However, this format generates an error if you are using a
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`torch.utils.data.DataLoader` with the default collation function:
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```py Python icon=Python
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TypeError: stack(): argument 'tensors' (position 1) must be tuple of Tensors, not Tensor
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```
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This error occurs because the default collation function does not currently expect a single two-dimensional tensor.
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It expects a list of tensors which it will then stack. This is what is output by the `torch` format but that format
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requires a data copy. To avoid this error, and avoid data copies, you will need to provide a custom collation function
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in addition to specifying the `torch_col` format.
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```py Python icon=Python
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from lancedb.permutation import Permutation
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permutation = Permutation.identity(table).with_format("torch_col")
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dataloader = torch.utils.data.DataLoader(permutation, collate_fn=lambda x: x)
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```
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This will now output a single two-dimensional tensor for each batch.
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## Selecting columns {#selecting-columns}
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By default, the `Table` class will return all columns in the table when used as input to PyTorch. If you only need
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a subset of columns, you can significantly reduce your I/O requirements by selecting only the columns you need. The
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`Permutation` class provides a `select_columns` method that provides this functionality.
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```py Python icon=Python
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from lancedb.permutation import Permutation
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permutation = Permutation.identity(table).select_columns(["id", "prompt"])
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dataloader = torch.utils.data.DataLoader(
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permutation, batch_size=1024, shuffle=True
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)
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for batch in dataloader:
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print(batch.schema)
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```
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## Using multiple DataLoader workers {#using-multiple-dataloader-workers}
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Set `num_workers > 0` to read from LanceDB in multiple PyTorch worker processes. `Permutation` objects and tables on a deployment are picklable, so each worker reopens the table after it starts. A local table is not, so wrap it in a `Permutation`, as below, to read it from several workers.
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Prefer the `forkserver` start method when using multiple workers. LanceDB uses internal threads, so the default `fork` method is unsafe; `forkserver` avoids that while being cheaper to start than `spawn`, and it is set to become the Python default. See [the performance guide](/search#performance) for more multiprocessing guidance.
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<Note>
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`forkserver` is only available on POSIX systems (Linux and macOS). On Windows, use `spawn` instead — it is the only start method available there.
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</Note>
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```py Python icon=Python
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import torch
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from lancedb.permutation import Permutation
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permutation = Permutation.identity(table)
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dataloader = torch.utils.data.DataLoader(
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permutation,
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batch_size=1024,
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shuffle=True,
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num_workers=4,
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multiprocessing_context="forkserver",
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persistent_workers=True,
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)
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```
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### Remote tables in DataLoader workers {#remote-tables-in-dataloader-workers}
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Remote LanceDB Enterprise tables (`db://...`) work the same way: workers reopen the table from the pickled connection state.
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```py Python icon=Python
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import lancedb
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import torch
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from lancedb.util import tbl_to_tensor
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db = lancedb.connect(
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"db://my-database",
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api_key="sk-...",
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region="us-east-1",
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)
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table = db.open_table("my_table")
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dataloader = torch.utils.data.DataLoader(
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table,
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batch_size=512,
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num_workers=4,
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multiprocessing_context="forkserver",
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collate_fn=tbl_to_tensor,
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)
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```
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<Note>
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This sends the connection state, including the API key, to each worker. Use a connection factory if credentials should be loaded inside the worker or your `client_config` contains a non-serializable `header_provider`.
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</Note>
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### Providing a custom connection factory {#providing-a-custom-connection-factory}
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`Permutation.with_connection_factory` lets each worker reopen the base table with custom logic. The factory takes the table name, returns a LanceDB table, and must be picklable.
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```py Python icon=Python
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import os
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import lancedb
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import torch
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from lancedb.permutation import Permutation
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def open_table(name: str):
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db = lancedb.connect(
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"db://my-database",
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api_key=os.environ["LANCEDB_API_KEY"],
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region="us-east-1",
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)
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return db.open_table(name)
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table = open_table("my_table")
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permutation = (
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Permutation.identity(table)
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.with_connection_factory(open_table)
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)
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dataloader = torch.utils.data.DataLoader(
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permutation,
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batch_size=512,
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num_workers=4,
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multiprocessing_context="forkserver",
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)
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```
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