Merge branch 'main' of https://github.com/neondatabase/neon into skyzh/layermap-ref-2

This commit is contained in:
Alex Chi
2023-06-27 10:02:57 -04:00
48 changed files with 1069 additions and 476 deletions

View File

@@ -62,6 +62,7 @@ PAGESERVER_GLOBAL_METRICS: Tuple[str, ...] = (
"pageserver_getpage_reconstruct_seconds_bucket",
"pageserver_getpage_reconstruct_seconds_count",
"pageserver_getpage_reconstruct_seconds_sum",
*[f"pageserver_basebackup_query_seconds_{x}" for x in ["bucket", "count", "sum"]],
)
PAGESERVER_PER_TENANT_METRICS: Tuple[str, ...] = (

View File

@@ -2415,6 +2415,17 @@ class Endpoint(PgProtocol):
return self
def respec(self, **kwargs):
"""Update the endpoint.json file used by control_plane."""
# Read config
config_path = os.path.join(self.endpoint_path(), "endpoint.json")
with open(config_path, "r") as f:
data_dict = json.load(f)
# Write it back updated
with open(config_path, "w") as file:
json.dump(dict(data_dict, **kwargs), file, indent=4)
def stop(self) -> "Endpoint":
"""
Stop the Postgres instance if it's running.

View File

@@ -32,13 +32,18 @@ def test_startup_simple(neon_env_builder: NeonEnvBuilder, zenbenchmark: NeonBenc
env.neon_cli.create_branch("test_startup")
endpoint = None
# We do two iterations so we can see if the second startup is faster. It should
# be because the compute node should already be configured with roles, databases,
# extensions, etc from the first run.
for i in range(2):
# Start
with zenbenchmark.record_duration(f"{i}_start_and_select"):
endpoint = env.endpoints.create_start("test_startup")
if endpoint:
endpoint.start()
else:
endpoint = env.endpoints.create_start("test_startup")
endpoint.safe_psql("select 1;")
# Get metrics
@@ -57,6 +62,9 @@ def test_startup_simple(neon_env_builder: NeonEnvBuilder, zenbenchmark: NeonBenc
# Stop so we can restart
endpoint.stop()
# Imitate optimizations that console would do for the second start
endpoint.respec(skip_pg_catalog_updates=True)
# This test sometimes runs for longer than the global 5 minute timeout.
@pytest.mark.timeout(600)

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@@ -1,2 +1,2 @@
pg8000==1.29.4
pg8000==1.29.8
scramp>=1.4.3

View File

@@ -396,9 +396,9 @@ checksum = "b7e5500299e16ebb147ae15a00a942af264cf3688f47923b8fc2cd5858f23ad3"
[[package]]
name = "openssl"
version = "0.10.52"
version = "0.10.55"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "01b8574602df80f7b85fdfc5392fa884a4e3b3f4f35402c070ab34c3d3f78d56"
checksum = "345df152bc43501c5eb9e4654ff05f794effb78d4efe3d53abc158baddc0703d"
dependencies = [
"bitflags",
"cfg-if",
@@ -428,9 +428,9 @@ checksum = "ff011a302c396a5197692431fc1948019154afc178baf7d8e37367442a4601cf"
[[package]]
name = "openssl-sys"
version = "0.9.87"
version = "0.9.90"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8e17f59264b2809d77ae94f0e1ebabc434773f370d6ca667bd223ea10e06cc7e"
checksum = "374533b0e45f3a7ced10fcaeccca020e66656bc03dac384f852e4e5a7a8104a6"
dependencies = [
"cc",
"libc",

View File

@@ -1,4 +1,4 @@
FROM rust:1.69
FROM rust:1.70
WORKDIR /source
COPY . .

View File

@@ -5,8 +5,8 @@
"kind" : "remoteSourceControl",
"location" : "https://github.com/vapor/postgres-nio.git",
"state" : {
"revision" : "dbf9c2eb596df39cba8ff3f74d74b2e6a31bd937",
"version" : "1.14.1"
"revision" : "061a0836d7c1887e04a975d1d2eaa2ef5fd7dfab",
"version" : "1.16.0"
}
},
{
@@ -59,8 +59,8 @@
"kind" : "remoteSourceControl",
"location" : "https://github.com/apple/swift-nio.git",
"state" : {
"revision" : "d1690f85419fdac8d54e350fb6d2ab9fd95afd75",
"version" : "2.51.1"
"revision" : "6213ba7a06febe8fef60563a4a7d26a4085783cf",
"version" : "2.54.0"
}
},
{

View File

@@ -4,7 +4,7 @@ import PackageDescription
let package = Package(
name: "PostgresNIOExample",
dependencies: [
.package(url: "https://github.com/vapor/postgres-nio.git", from: "1.14.1")
.package(url: "https://github.com/vapor/postgres-nio.git", from: "1.16.0")
],
targets: [
.executableTarget(

View File

@@ -5,23 +5,7 @@
"packages": {
"": {
"dependencies": {
"postgresql-client": "2.5.5"
}
},
"node_modules/debug": {
"version": "4.3.4",
"resolved": "https://registry.npmjs.org/debug/-/debug-4.3.4.tgz",
"integrity": "sha512-PRWFHuSU3eDtQJPvnNY7Jcket1j0t5OuOsFzPPzsekD52Zl8qUfFIPEiswXqIvHWGVHOgX+7G/vCNNhehwxfkQ==",
"dependencies": {
"ms": "2.1.2"
},
"engines": {
"node": ">=6.0"
},
"peerDependenciesMeta": {
"supports-color": {
"optional": true
}
"postgresql-client": "2.5.9"
}
},
"node_modules/doublylinked": {
@@ -41,11 +25,6 @@
"putil-promisify": "^1.8.6"
}
},
"node_modules/ms": {
"version": "2.1.2",
"resolved": "https://registry.npmjs.org/ms/-/ms-2.1.2.tgz",
"integrity": "sha512-sGkPx+VjMtmA6MX27oA4FBFELFCZZ4S4XqeGOXCv68tT+jb3vk/RyaKWP0PTKyWtmLSM0b+adUTEvbs1PEaH2w=="
},
"node_modules/obuf": {
"version": "1.1.2",
"resolved": "https://registry.npmjs.org/obuf/-/obuf-1.1.2.tgz",
@@ -63,30 +42,28 @@
}
},
"node_modules/postgresql-client": {
"version": "2.5.5",
"resolved": "https://registry.npmjs.org/postgresql-client/-/postgresql-client-2.5.5.tgz",
"integrity": "sha512-2Mu3i+6NQ9cnkoZNd0XeSZo9WoUpuWf4ZSiCCoDWSj82T93py2/SKXZ1aUaP8mVaU0oKpyyGe0IwLYZ1VHShnA==",
"version": "2.5.9",
"resolved": "https://registry.npmjs.org/postgresql-client/-/postgresql-client-2.5.9.tgz",
"integrity": "sha512-s+kgTN6TfWLzehEyxw4Im4odnxVRCbZ0DEJzWS6SLowPAmB2m1/DOiOvZC0+ZVoi5AfbGE6SBqFxKguSyVAXZg==",
"dependencies": {
"debug": "^4.3.4",
"doublylinked": "^2.5.2",
"lightning-pool": "^4.2.1",
"postgres-bytea": "^3.0.0",
"power-tasks": "^1.6.4",
"power-tasks": "^1.7.0",
"putil-merge": "^3.10.3",
"putil-promisify": "^1.10.0",
"putil-varhelpers": "^1.6.5"
},
"engines": {
"node": ">=14.0",
"node": ">=16.0",
"npm": ">=7.0.0"
}
},
"node_modules/power-tasks": {
"version": "1.6.4",
"resolved": "https://registry.npmjs.org/power-tasks/-/power-tasks-1.6.4.tgz",
"integrity": "sha512-LX8GGgEIP1N7jsZqlqZ275e6f1Ehq97APCEGj8uVO0NoEoB+77QUX12BFv3LmlNKfq4fIuNSPiHhyHFjqn2gfA==",
"version": "1.7.0",
"resolved": "https://registry.npmjs.org/power-tasks/-/power-tasks-1.7.0.tgz",
"integrity": "sha512-rndZXCDxhuIDjPUJJvQwBDHaYagCkjvbPF/NA+omh/Ef4rAI9KtnvdA0k98dyiGpn1zXOpc6c2c0JWzg/xAhJg==",
"dependencies": {
"debug": "^4.3.4",
"doublylinked": "^2.5.2",
"strict-typed-events": "^2.3.1"
},
@@ -132,9 +109,9 @@
}
},
"node_modules/ts-gems": {
"version": "2.3.0",
"resolved": "https://registry.npmjs.org/ts-gems/-/ts-gems-2.3.0.tgz",
"integrity": "sha512-bUvrwrzlct7vfaNvtgMhynDf6lAki/kTtrNsIGhX6l7GJGK3s6b8Ro7dazOLXabV0m2jyShBzDQ8X1+h/C2Cug=="
"version": "2.4.0",
"resolved": "https://registry.npmjs.org/ts-gems/-/ts-gems-2.4.0.tgz",
"integrity": "sha512-SdugYAXoWvbqrxLodIObzxhEKacDxh5LfAJIiIkiH7q5thvuuCzdmkdTVQYf7uEDrEpPhfx4tokDMamdO3be9A=="
}
}
}

View File

@@ -1,6 +1,6 @@
{
"type": "module",
"dependencies": {
"postgresql-client": "2.5.5"
"postgresql-client": "2.5.9"
}
}

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@@ -1,4 +1,4 @@
FROM node:18
FROM node:20
WORKDIR /source
COPY . .

View File

@@ -5,16 +5,16 @@
"packages": {
"": {
"dependencies": {
"@neondatabase/serverless": "0.4.3",
"@neondatabase/serverless": "0.4.18",
"ws": "8.13.0"
}
},
"node_modules/@neondatabase/serverless": {
"version": "0.4.3",
"resolved": "https://registry.npmjs.org/@neondatabase/serverless/-/serverless-0.4.3.tgz",
"integrity": "sha512-U8tpuF5f0R5WRsciR7iaJ5S2h54DWa6Z6CEW+J4KgwyvRN3q3qDz0MibdfFXU0WqnRoi/9RSf/2XN4TfeaOCbQ==",
"version": "0.4.18",
"resolved": "https://registry.npmjs.org/@neondatabase/serverless/-/serverless-0.4.18.tgz",
"integrity": "sha512-2TZnIyRGC/+0fjZ8TKCzaSTPUD94PM7NBGuantGZbUrbWyqBwGnUoRtdZAQ95qBKVHqORLVfymlv2NE+HQMFeA==",
"dependencies": {
"@types/pg": "^8.6.6"
"@types/pg": "8.6.6"
}
},
"node_modules/@types/node": {

View File

@@ -1,7 +1,7 @@
{
"type": "module",
"dependencies": {
"@neondatabase/serverless": "0.4.3",
"@neondatabase/serverless": "0.4.18",
"ws": "8.13.0"
}
}

View File

@@ -2,6 +2,7 @@ import copy
import os
import shutil
import subprocess
import tempfile
from pathlib import Path
from typing import Any, Optional
@@ -448,7 +449,7 @@ def dump_differs(first: Path, second: Path, output: Path) -> bool:
"""
with output.open("w") as stdout:
rv = subprocess.run(
res = subprocess.run(
[
"diff",
"--unified", # Make diff output more readable
@@ -460,4 +461,53 @@ def dump_differs(first: Path, second: Path, output: Path) -> bool:
stdout=stdout,
)
return rv.returncode != 0
differs = res.returncode != 0
# TODO: Remove after https://github.com/neondatabase/neon/pull/4425 is merged, and a couple of releases are made
if differs:
with tempfile.NamedTemporaryFile(mode="w") as tmp:
tmp.write(PR4425_ALLOWED_DIFF)
tmp.flush()
allowed = subprocess.run(
[
"diff",
"--unified", # Make diff output more readable
r"--ignore-matching-lines=^---", # Ignore diff headers
r"--ignore-matching-lines=^\+\+\+", # Ignore diff headers
"--ignore-matching-lines=^@@", # Ignore diff blocks location
"--ignore-matching-lines=^ *$", # Ignore lines with only spaces
"--ignore-matching-lines=^ --.*", # Ignore the " --" lines for compatibility with PG14
"--ignore-blank-lines",
str(output),
str(tmp.name),
],
)
differs = allowed.returncode != 0
return differs
PR4425_ALLOWED_DIFF = """
--- /tmp/test_output/test_backward_compatibility[release-pg15]/compatibility_snapshot/dump.sql 2023-06-08 18:12:45.000000000 +0000
+++ /tmp/test_output/test_backward_compatibility[release-pg15]/dump.sql 2023-06-13 07:25:35.211733653 +0000
@@ -13,12 +13,20 @@
CREATE ROLE cloud_admin;
ALTER ROLE cloud_admin WITH SUPERUSER INHERIT CREATEROLE CREATEDB LOGIN REPLICATION BYPASSRLS;
+CREATE ROLE neon_superuser;
+ALTER ROLE neon_superuser WITH NOSUPERUSER INHERIT CREATEROLE CREATEDB NOLOGIN NOREPLICATION NOBYPASSRLS;
--
-- User Configurations
--
+--
+-- Role memberships
+--
+
+GRANT pg_read_all_data TO neon_superuser GRANTED BY cloud_admin;
+GRANT pg_write_all_data TO neon_superuser GRANTED BY cloud_admin;
"""

View File

@@ -1,3 +1,5 @@
import time
import pytest
from fixtures.neon_fixtures import NeonEnv
@@ -10,9 +12,10 @@ def test_hot_standby(neon_simple_env: NeonEnv):
branch_name="main",
endpoint_id="primary",
) as primary:
time.sleep(1)
with env.endpoints.new_replica_start(origin=primary, endpoint_id="secondary") as secondary:
primary_lsn = None
cought_up = False
caught_up = False
queries = [
"SHOW neon.timeline_id",
"SHOW neon.tenant_id",
@@ -56,7 +59,7 @@ def test_hot_standby(neon_simple_env: NeonEnv):
res = s_cur.fetchone()
assert res is not None
while not cought_up:
while not caught_up:
with s_con.cursor() as secondary_cursor:
secondary_cursor.execute("SELECT pg_last_wal_replay_lsn()")
res = secondary_cursor.fetchone()
@@ -66,7 +69,7 @@ def test_hot_standby(neon_simple_env: NeonEnv):
# due to e.g. autovacuum, but that shouldn't impact the content
# of the tables, so we check whether we've replayed up to at
# least after the commit of the `test` table.
cought_up = secondary_lsn >= primary_lsn
caught_up = secondary_lsn >= primary_lsn
# Explicit commit to flush any transient transaction-level state.
s_con.commit()

View File

@@ -16,6 +16,7 @@ from fixtures.pg_version import PgVersion, xfail_on_postgres
from fixtures.types import Lsn, TenantId, TimelineId
@pytest.mark.xfail
def test_empty_tenant_size(neon_simple_env: NeonEnv, test_output_dir: Path):
env = neon_simple_env
(tenant_id, _) = env.neon_cli.create_tenant()
@@ -44,12 +45,16 @@ def test_empty_tenant_size(neon_simple_env: NeonEnv, test_output_dir: Path):
# we've disabled the autovacuum and checkpoint
# so background processes should not change the size.
# If this test will flake we should probably loosen the check
assert size == initial_size, "starting idle compute should not change the tenant size"
assert (
size == initial_size
), f"starting idle compute should not change the tenant size (Currently {size}, expected {initial_size})"
# the size should be the same, until we increase the size over the
# gc_horizon
size, inputs = http_client.tenant_size_and_modelinputs(tenant_id)
assert size == initial_size, "tenant_size should not be affected by shutdown of compute"
assert (
size == initial_size
), f"tenant_size should not be affected by shutdown of compute (Currently {size}, expected {initial_size})"
expected_inputs = {
"segments": [
@@ -318,6 +323,7 @@ def test_only_heads_within_horizon(neon_simple_env: NeonEnv, test_output_dir: Pa
size_debug_file.write(size_debug)
@pytest.mark.xfail
def test_single_branch_get_tenant_size_grows(
neon_env_builder: NeonEnvBuilder, test_output_dir: Path, pg_version: PgVersion
):
@@ -333,13 +339,13 @@ def test_single_branch_get_tenant_size_grows(
# inserts is larger than gc_horizon. for example 0x20000 here hid the fact
# that there next_gc_cutoff could be smaller than initdb_lsn, which will
# obviously lead to issues when calculating the size.
gc_horizon = 0x38000
gc_horizon = 0x3BA00
# it's a bit of a hack, but different versions of postgres have different
# amount of WAL generated for the same amount of data. so we need to
# adjust the gc_horizon accordingly.
if pg_version == PgVersion.V14:
gc_horizon = 0x40000
gc_horizon = 0x4A000
neon_env_builder.pageserver_config_override = f"tenant_config={{compaction_period='0s', gc_period='0s', pitr_interval='0sec', gc_horizon={gc_horizon}}}"
@@ -360,11 +366,11 @@ def test_single_branch_get_tenant_size_grows(
if current_lsn - initdb_lsn >= gc_horizon:
assert (
size >= prev_size
), "tenant_size may grow or not grow, because we only add gc_horizon amount of WAL to initial snapshot size"
), f"tenant_size may grow or not grow, because we only add gc_horizon amount of WAL to initial snapshot size (Currently at: {current_lsn}, Init at: {initdb_lsn})"
else:
assert (
size > prev_size
), "tenant_size should grow, because we continue to add WAL to initial snapshot size"
), f"tenant_size should grow, because we continue to add WAL to initial snapshot size (Currently at: {current_lsn}, Init at: {initdb_lsn})"
def get_current_consistent_size(
env: NeonEnv,

View File

@@ -463,10 +463,10 @@ def test_concurrent_timeline_delete_stuck_on(
# make the second call and assert behavior
log.info("second call start")
error_msg_re = "timeline deletion is already in progress"
error_msg_re = "Timeline deletion is already in progress"
with pytest.raises(PageserverApiException, match=error_msg_re) as second_call_err:
ps_http.timeline_delete(env.initial_tenant, child_timeline_id)
assert second_call_err.value.status_code == 500
assert second_call_err.value.status_code == 409
env.pageserver.allowed_errors.append(f".*{child_timeline_id}.*{error_msg_re}.*")
# the second call will try to transition the timeline into Stopping state as well
env.pageserver.allowed_errors.append(
@@ -518,9 +518,9 @@ def test_delete_timeline_client_hangup(neon_env_builder: NeonEnvBuilder):
ps_http.timeline_delete(env.initial_tenant, child_timeline_id, timeout=2)
env.pageserver.allowed_errors.append(
f".*{child_timeline_id}.*timeline deletion is already in progress.*"
f".*{child_timeline_id}.*Timeline deletion is already in progress.*"
)
with pytest.raises(PageserverApiException, match="timeline deletion is already in progress"):
with pytest.raises(PageserverApiException, match="Timeline deletion is already in progress"):
ps_http.timeline_delete(env.initial_tenant, child_timeline_id, timeout=2)
# make sure the timeout was due to the failpoint