ref https://github.com/neondatabase/neon/issues/8872
## Summary of changes
We saw stuck storage scrubber in staging caused by infinite retries. I
believe here we should use `min` instead of `max` to avoid getting
minutes or hours of retry backoff.
Signed-off-by: Alex Chi Z <chi@neon.tech>
The test is very rudimentary, it only checks that before and after
tenant deletion, we can run `scan_metadata` for the safekeeper node
kind. Also, we don't actually expect any uploaded data, for that we
don't have enough WAL (needs to create at least one S3-uploaded file,
the scrubber doesn't recognize partial files yet).
The `scan_metadata` scrubber subcommand is extended to support either
specifying a database connection string, which was previously the only
way, and required a database to be present, or specifying the timeline
information manually via json. This is ideal for testing scenarios
because in those, the number of timelines is usually limited,
but it is involved to spin up a database just to write the timeline
information.
When implementing bottom-most gc-compaction, we analyzed the structure
of layer maps that the current compaction algorithm could produce, and
decided to only support structures without delta layer overlaps and LSN
intersections with the exception of single key layers.
## Summary of changes
This patch adds the layer map valid check in the storage scrubber.
---------
Signed-off-by: Alex Chi Z <chi@neon.tech>
We get many HTTP connect timeout errors from scrubber logs, and it
turned out that the scrubber is retrying, and this is not an actual
error. In the future, we should revisit all places where we log errors
in the storage scrubber, and only error when necessary (i.e., errors
that might need manual fixing)
Signed-off-by: Alex Chi Z <chi@neon.tech>
close https://github.com/neondatabase/neon/issues/8579
## Summary of changes
The `is_l0` check now takes both layer key range and the layer type.
This allows us to have image layers covering the full key range in
btm-most compaction (upcoming PR). However, we still don't allow delta
layers to cover the full key range, and I will make btm-most compaction
to generate delta layers with the key range of the keys existing in the
layer instead of `Key::MIN..Key::HACK_MAX` (upcoming PR).
Signed-off-by: Alex Chi Z <chi@neon.tech>
Removes the `_generic` postfix from the `GenericRemoteStorage` using
APIs, as `remote_storage` is the "default" now, and add a `_s3` postfix
to the remaining APIs using the S3 SDK (only in tenant snapshot). Also,
remove two unused functions: `list_objects_with_retries` and
`stream_tenants functions`.
Part of https://github.com/neondatabase/neon/issues/7547
Migrates most of the remaining parts of the scrubber to remote_storage:
* `pageserver_physical_gc`
* `scan_metadata` for pageservers (safekeepers were done in #8595)
* `download()` in `tenant_snapshot`. The main `tenant_snapshot` is not
migrated as it uses version history to be able to work in the face of
ongoing changes.
Part of #7547
Part of #8128.
## Description
This PR creates a unified command to run both physical gc and metadata
health check as a cron job. This also enables us to add additional tasks
to the cron job in the future.
Signed-off-by: Yuchen Liang <yuchen@neon.tech>
## Problem
The storage scrubber was reporting warnings for lots of timelines like:
```
WARN Missed some shards at count ShardCount(0) tenant_id=25eb7a83d9a2f90ac0b765b6ca84cf4c
```
These were spurious: these tenants are fine. There was a bug in
accumulating the ShardIndex for each tenant, whereby multiple timelines
would lead us to add the same ShardIndex more than one.
Closes: #8646
## Summary of changes
- Accumulate ShardIndex in a BTreeSet instead of a Vec
- Extend the test to reproduce the issue
Part of #8128.
## Problem
Currently, scrubber `scan_metadata` command will return with an error
code if the metadata on remote storage is corrupted with fatal errors.
To safely deploy this command in a cronjob, we want to differentiate
between failures while running scrubber command and the erroneous
metadata. At the same time, we also want our regression tests to catch
corrupted metadata using the scrubber command.
## Summary of changes
- Return with error code only when the scrubber command fails
- Uses explicit checks on errors and warnings to determine metadata
health in regression tests.
**Resolve conflict with `tenant-snapshot` command (after shard split):**
[`test_scrubber_tenant_snapshot`](https://github.com/neondatabase/neon/blob/yuchen/scrubber-scan-cleanup-before-prod/test_runner/regress/test_storage_scrubber.py#L23)
failed before applying 422a8443dd
- When taking a snapshot, the old `index_part.json` in the unsharded
tenant directory is not kept.
- The current `list_timeline_blobs` implementation consider no
`index_part.json` as a parse error.
- During the scan, we are only analyzing shards with highest shard
count, so we will not get a parse error. but we do need to add the
layers to tenant object listing, otherwise we will get index is
referencing a layer that is not in remote storage error.
- **Action:** Add s3_layers from `list_timeline_blobs` regardless of
parsing error
Signed-off-by: Yuchen Liang <yuchen@neon.tech>
#8600 missed the hunk changing index_part.json informative version.
Include it in this PR, in addition add more non-warning index_part.json
versions to scrubber.
## Problem
Previously, when we do a timeline deletion, shards will delete layers
that belong to an ancestor. That is not a correctness issue, because
when we delete a timeline, we're always deleting it from all shards, and
destroying data for that timeline is clearly fine.
However, there exists a race where one shard might start doing this
deletion while another shard has not yet received the deletion request,
and might try to access an ancestral layer. This creates ambiguity over
the "all layers referenced by my index should always exist" invariant,
which is important to detecting and reporting corruption.
Now that we have a GC mode for clearing up ancestral layers, we can rely
on that to clean up such layers, and avoid deleting them right away.
This makes things easier to reason about: there are now no cases where a
shard will delete a layer that belongs to a ShardIndex other than
itself.
## Summary of changes
- Modify behavior of RemoteTimelineClient::delete_all
- Add `test_scrubber_physical_gc_timeline_deletion` to exercise this
case
- Tweak AWS SDK config in the scrubber to enable retries. Motivated by
seeing the test for this feature encounter some transient "service
error" S3 errors (which are probably nothing to do with the changes in
this PR)
Uses the newly added APIs from #8541 named `stream_tenants_generic` and
`stream_objects_with_retries` and extends them with
`list_objects_with_retries_generic` and
`stream_tenant_timelines_generic` to migrate the `find-garbage` command
of the scrubber to `GenericRemoteStorage`.
Part of https://github.com/neondatabase/neon/issues/7547
Part of #8128, followup to #8480. closes#8421.
Enable scrubber to optionally post metadata scan health results to
storage controller.
Signed-off-by: Yuchen Liang <yuchen@neon.tech>
Add two new functions `stream_objects_with_retries` and
`stream_tenants_generic` and use them in the `find-large-objects`
subcommand, migrating it to `remote_storage`.
Also adds the `size` field to the `ListingObject` struct.
Part of #7547
## Problem
Old storage buckets can contain a lot of tenants that aren't known to
the control plane at all, because they belonged to test jobs that get
their control plane state cleaned up shortly after running.
In general, it's somewhat unsafe to purge these, as it's hard to
distinguish "control plane doesn't know about this, so it's garbage"
from "control plane said it didn't know about this, which is a bug in
the scrubber, control plane, or API URL configured".
However, the most common case is that we see only a small husk of a
tenant in S3 from a specific old behavior of the software, for example:
- We had a bug where heatmaps weren't deleted on tenant delete
- When WAL DR was first deployed, we didn't delete initdb.tar.zst on
tenant deletion
## Summary of changes
- Add a KnownBug variant for the garbage reason
- Include such cases in the "safe" deletion mode (`--mode=deleted`)
- Add code that inspects tenants missing in control plane to identify
cases of known bugs (this is kind of slow, but should go away once we've
cleaned all these up)
- Add an additional `-min-age` safety check similar to physical GC,
where even if everything indicates objects aren't needed, we won't
delete something that has been modified too recently.
---------
Co-authored-by: Yuchen Liang <70461588+yliang412@users.noreply.github.com>
Co-authored-by: Arpad Müller <arpad-m@users.noreply.github.com>
Persists whether a timeline is archived or not in `index_part.json`. We
only return success if the upload has actually worked successfully.
Also introduces a new `index_part.json` version number.
Fixes#8459
Part of #8088
## Problem
The scrubber would like to check the highest mtime in a tenant's objects
as a safety check during purges. It recently switched to use
GenericRemoteStorage, so we need to expose that in the listing methods.
## Summary of changes
- In Listing.keys, return a ListingObject{} including a last_modified
field, instead of a RemotePath
---------
Co-authored-by: Arpad Müller <arpad-m@users.noreply.github.com>
Part of #8128.
## Problem
Scrubber uses `scan_metadata` command to flag metadata inconsistencies.
To trust it at scale, we need to make sure the errors we emit is a
reflection of real scenario. One check performed in the scrubber is to
see whether layers listed in the latest `index_part.json` is present in
object listing. Currently, the scrubber does not robustly handle the
case where objects are uploaded/deleted during the scan.
## Summary of changes
**Condition for success:** An object in the index is (1) in the object
listing we acquire from S3 or (2) found in a HeadObject request (new
object).
- Add in the `HeadObject` requests for the layers missing from the
object listing.
- Keep the order of first getting the object listing and then
downloading the layers.
- Update check to only consider shards with highest shard count.
- Skip analyzing a timeline if `deleted_at` tombstone is marked in
`index_part.json`.
- Add new test to see if scrubber actually detect the metadata
inconsistency.
_Misc_
- A timeline with no ancestor should always have some layers.
- Removed experimental histograms
_Caveat_
- Ancestor layer is not cleaned until #8308 is implemented. If ancestor
layers reference non-existing layers in the index, the scrubber will
emit false positives.
Signed-off-by: Yuchen Liang <yuchen@neon.tech>
Starts using the `remote_storage` crate in the S3 scrubber for the
`PurgeGarbage` subcommand.
The `remote_storage` crate is generic over various backends and thus
using it gives us the ability to run the scrubber against all supported
backends.
Start with the `PurgeGarbage` subcommand as it doesn't use
`stream_tenants`.
Part of #7547.
## Problem
After a shard split, the pageserver leaves the ancestor shard's content
in place. It may be referenced by child shards, but eventually child
shards will de-reference most ancestor layers as they write their own
data and do GC. We would like to eventually clean up those ancestor
layers to reclaim space.
## Summary of changes
- Extend the physical GC command with `--mode=full`, which includes
cleaning up unreferenced ancestor shard layers
- Add test `test_scrubber_physical_gc_ancestors`
- Remove colored log output: in testing this is irritating ANSI code
spam in logs, and in interactive use doesn't add much.
- Refactor storage controller API client code out of storcon_client into
a `storage_controller/client` crate
- During physical GC of ancestors, call into the storage controller to
check that the latest shards seen in S3 reflect the latest state of the
tenant, and there is no shard split in progress.
part of https://github.com/neondatabase/cloud/issues/14024, k8s does not
always have a volume available for logging, and I'm running into weird
permission errors... While I could spend time figuring out how to create
temp directories for logging, I think it would be better to just disable
file logging as k8s containers are ephemeral and we cannot retrieve
anything on the fs after the container gets removed.
## Summary of changes
`PAGESERVER_DISABLE_FILE_LOGGING=1` -> file logging disabled
Signed-off-by: Alex Chi Z <chi@neon.tech>
The find-large-objects scrubber subcommand is quite fast if you run it
in an environment with low latency to the S3 bucket (say an EC2 instance
in the same region). However, the higher the latency gets, the slower
the command becomes. Therefore, add a concurrency param and make it
parallelized. This doesn't change that general relationship, but at
least lets us do multiple requests in parallel and therefore hopefully
faster.
Running with concurrency of 64 (default):
```
2024-07-05T17:30:22.882959Z INFO lazy_load_identity [...]
[...]
2024-07-05T17:30:28.289853Z INFO Scanned 500 shards. [...]
```
With concurrency of 1, simulating state before this PR:
```
2024-07-05T17:31:43.375153Z INFO lazy_load_identity [...]
[...]
2024-07-05T17:33:51.987092Z INFO Scanned 500 shards. [...]
```
In other words, to list 500 shards, speed is increased from 2:08 minutes
to 6 seconds.
Follow-up of #8257, part of #5431
Adds a find-large-objects subcommand to the scrubber to allow listing
layer objects larger than a specific size.
To be used like:
```
AWS_PROFILE=dev REGION=us-east-2 BUCKET=neon-dev-storage-us-east-2 cargo run -p storage_scrubber -- find-large-objects --min-size 250000000 --ignore-deltas
```
Part of #5431
The S3 scrubber contains "S3" in its name, but we want to make it
generic in terms of which storage is used (#7547). Therefore, rename it
to "storage scrubber", following the naming scheme of already existing
components "storage broker" and "storage controller".
Part of #7547
