## Problem
It's impossible to run regression tests with Python 3.13 as some
dependencies don't support it (some of them are outdated, and `jsonnet`
doesn't support it at all yet)
## Summary of changes
- Update dependencies for Python 3.13
- Install `jsonnet` only on Python < 3.13 and skip relevant tests on
Python 3.13
Closes#10237
## Problem
We see periodic failures in `test_scrubber_physical_gc_ancestors`, where
the logs show that the pageserver is creating image layers that should
cause child shards to no longer reference their parents' layers, but
then the scrubber runs and doesn't find any unreferenced layers.[
https://neon-github-public-dev.s3.amazonaws.com/reports/pr-10256/12582034135/index.html#/testresult/78ea06dea6ba8dd3
From inspecting the code & test, it seems like this could be as simple
as the test failing to wait for uploads before running the scrubber. It
had a 2 second delay built in to satisfy the scrubbers time threshold
checks, which on a lightly loaded machine would also have been easily
enough for uploads to complete, but our test machines are more heavily
loaded all the time.
## Summary of changes
- Wait for uploads to complete after generating images layers in
test_scrubber_physical_gc_ancestors, so that the scrubber should
reliably see the post-compaction metadata.
## Problem
`test_pgdata_import_smoke` writes two gigabytes of pages and then reads
them back serially. This is CPU bottlenecked and results in a long
runtime, and sensitivity to CPU load from other tests on the same
machine.
Closes: https://github.com/neondatabase/neon/issues/10071
## Summary of changes
- Use effective_io_concurrency=32 when doing sequential scans through
2GiB of pages in test_pgdata_import_smoke. This is a ~10x runtime
decrease in the parts of the test that do sequential scans.
- Also set `effective_io_concurrency=2` for tests, as I noticed while
debugging that we were doing all getpage requests serially, which is bad
for checking the stability of the batching code.
## Problem
We cannot get the size of the compaction queue and access the info.
Part of #9114
## Summary of changes
* Add an API endpoint to get the compaction queue.
* gc_compaction test case now waits until the compaction finishes.
---------
Signed-off-by: Alex Chi Z <chi@neon.tech>
## Problem
part of https://github.com/neondatabase/neon/issues/9114
In https://github.com/neondatabase/neon/pull/10127 we fixed the race,
but we didn't add the errors to the allowlist.
## Summary of changes
* Allow repartition errors in the gc-compaction smoke test.
I think it might be worth to refactor the code to allow multiple threads
getting a copy of repartition status (i.e., using Rcu) in the future.
Signed-off-by: Alex Chi Z <chi@neon.tech>
Add a `safekeepers` subcommand to `storcon_cli` that allows listing the
safekeepers.
```
$ curl -X POST --url http://localhost:1234/control/v1/safekeeper/42 --data \
'{"active":true, "id":42, "created_at":"2023-10-25T09:11:25Z", "updated_at":"2024-08-28T11:32:43Z","region_id":"neon_local","host":"localhost","port":5454,"http_port":0,"version":123,"availability_zone_id":"us-east-2b"}'
$ cargo run --bin storcon_cli -- --api http://localhost:1234 safekeepers
Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.38s
Running `target/debug/storcon_cli --api 'http://localhost:1234' safekeepers`
+----+---------+-----------+------+-----------+------------+
| Id | Version | Host | Port | Http Port | AZ Id |
+==========================================================+
| 42 | 123 | localhost | 5454 | 0 | us-east-2b |
+----+---------+-----------+------+-----------+------------+
```
Also:
* Don't return the raw `SafekeeperPersistence` struct that contains the
raw database presentation, but instead a new
`SafekeeperDescribeResponse` struct.
* The `SafekeeperPersistence` struct leaves out the `active` field on
purpose because we want to deprecate it and replace it with a
`scheduling_policy` one.
Part of https://github.com/neondatabase/neon/issues/9981
## Problem
It is unreliable for the control plane to infer the AZ for computes from
where the tenant is currently attached, because if a tenant happens to
be in a degraded state or a release is ongoing while a compute starts,
then the tenant's attached AZ can be a different one to where it will
run long-term, and the control plane doesn't check back later to restart
the compute.
This can land in parallel with
https://github.com/neondatabase/neon/pull/9947
## Summary of changes
- Thread through the preferred AZ into the compute hook code via the
reconciler
- Include the preferred AZ in the body of compute hook notifications
## Problem
We've had similar test in test_logical_replication, but then removed it
because it wasn't needed to trigger LR related bug. Restarting at WAL
page boundary is still a useful test, so add it separately back.
## Summary of changes
Add the test.
## Problem
Changes in #9786 were functionally complete but missed some edges that
made testing less robust than it should have been:
- `is_key_disposable` didn't consider SLRU dir keys disposable
- Timeline `init_empty` was always creating SLRU dir keys on all shards
The result was that when we had a bug
(https://github.com/neondatabase/neon/pull/10080), it wasn't apparent in
tests, because one would only encounter the issue if running on a
long-lived timeline with enough compaction to drop the initially created
empty SLRU dir keys, _and_ some CLog truncation going on.
Closes: https://github.com/neondatabase/cloud/issues/21516
## Summary of changes
- Update is_key_global and init_empty to handle SLRU dir keys properly
-- the only functional impact is that we avoid writing some spurious
keys in shards >0, but this makes testing much more robust.
- Make `test_clog_truncate` explicitly use a sharded tenant
The net result is that if one reverts #10080, then tests fail (i.e. this
PR is a reproducer for the issue)
## Problem
In #8550, we made the flush loop wait for uploads after every layer.
This was to avoid unbounded buildup of uploads, and to reduce compaction
debt. However, the approach has several problems:
* It prevents upload parallelism.
* It prevents flush and upload pipelining.
* It slows down ingestion even when there is no need to backpressure.
* It does not directly backpressure WAL ingestion (only via
`disk_consistent_lsn`), and will build up in-memory layers.
* It does not directly backpressure based on compaction debt and read
amplification.
An alternative solution to these problems is proposed in #8390.
In the meanwhile, we revert the change to reduce the impact on ingest
throughput. This does reintroduce some risk of unbounded
upload/compaction buildup. Until
https://github.com/neondatabase/neon/issues/8390, this can be addressed
in other ways:
* Use `max_replication_apply_lag` (aka `remote_consistent_lsn`), which
will more directly limit upload debt.
* Shard the tenant, which will spread the flush/upload work across more
Pageservers and move the bottleneck to Safekeeper.
Touches #10095.
## Summary of changes
Remove waiting on the upload queue in the flush loop.
## Problem
When entry was dropped and password wasn't set, new entry
had uninitialized memory in controlplane adapter
Resolves: https://github.com/neondatabase/cloud/issues/14914
## Summary of changes
Initialize password in all cases, add tests.
Minor formatting for less indentation
The test was failing with the scary but generic message `Remote storage
metadata corrupted`.
The underlying scrubber error is `Orphan layer detected: ...`.
The test kills pageserver at random points, hence it's expected that we
leak layers if we're killed in the window after layer upload but before
it's referenced from index part.
Refer to generation numbers RFC for details.
Refs:
- fixes https://github.com/neondatabase/neon/issues/9988
- root-cause analysis
https://github.com/neondatabase/neon/issues/9988#issuecomment-2520673167
## Problem
`test_prefetch` is flaky
(https://github.com/neondatabase/neon/issues/9961), but if it passes,
the run time is less than 30 seconds — we don't need an extended timeout
for it.
## Summary of changes
- Remove extended test timeout for `test_prefetch`
This adds an API to the storage controller to list safekeepers
registered to it.
This PR does a `diesel print-schema > storage_controller/src/schema.rs`
because of an inconsistency between up.sql and schema.rs, introduced by
[this](2c142f14f7)
commit, so there is some updates of `schema.rs` due to that. As a
followup to this, we should maybe think about running `diesel
print-schema` in CI.
Part of #9981
## Problem
`test_check_visibility_map` has been seen to time out in debug tests.
## Summary of changes
Bump the timeout to 10 minutes (test reports indicate 7 minutes is
sufficient).
We don't want to disable the test entirely in debug builds, to exercise
this with debug assertions enabled.
Resolves#10069.
## Problem
We saw the drain/fill operations not drain fast enough in ap-southeast.
## Summary of changes
These are some quick changes to speed it up:
* double reconcile concurrency - this is now half of the available
reconcile bandwidth
* reduce the waiter polling timeout - this way we can spawn new
reconciliations faster
## Problem
Cplane and storage controller tenant config changes are not additive.
Any change overrides all existing tenant configs. This would be fine if
both did client side patching, but that's not the case.
Once this merges, we must update cplane to use the PATCH endpoint.
## Summary of changes
### High Level
Allow for patching of tenant configuration with a `PATCH
/v1/tenant/config` endpoint.
It takes the same data as it's PUT counterpart. For example the payload
below will update `gc_period` and unset `compaction_period`. All other
fields are left in their original state.
```
{
"tenant_id": "1234",
"gc_period": "10s",
"compaction_period": null
}
```
### Low Level
* PS and storcon gain `PATCH /v1/tenant/config` endpoints. PS endpoint
is only used for cplane managed instances.
* `storcon_cli` is updated to have separate commands for
`set-tenant-config` and `patch-tenant-config`
Related https://github.com/neondatabase/cloud/issues/21043
add owned_by_superuser field to filter out system extensions.
While on it, also correct related code:
- fix the metric setting: use set() instead of inc() in a loop.
inc() is not idempotent and can lead to incorrect results
if the function called multiple times. Currently it is only called at
compute start, but this will change soon.
- fix the return type of the installed_extensions endpoint
to match the metric. Currently it is only used in the test.
## Problem
resolve
https://github.com/neondatabase/neon/issues/9988#issuecomment-2528239437
## Summary of changes
* New verbose mode for storage scrubber scan metadata (pageserver) that
contains the error messages.
* Filter allowed_error list from the JSON output to determine the
healthy flag status.
---------
Signed-off-by: Alex Chi Z <chi@neon.tech>
## Problem
close https://github.com/neondatabase/neon/issues/10049, close
https://github.com/neondatabase/neon/issues/10030, close
https://github.com/neondatabase/neon/issues/8861
part of https://github.com/neondatabase/neon/issues/9114
The legacy gc process calls `get_latest_gc_cutoff`, which uses a Rcu
different than the gc_info struct. In the gc_compaction_smoke test case,
the "latest" cutoff could be lower than the gc_info struct, causing
gc-compaction to collect data that could be accessed by
`latest_gc_cutoff`. Technically speaking, there's nothing wrong with
gc-compaction using gc_info without considering latest_gc_cutoff,
because gc_info is the source of truth. But anyways, let's fix it.
## Summary of changes
* gc-compaction uses `latest_gc_cutoff` instead of gc_info to determine
the gc horizon.
* if a gc-compaction is scheduled via tenant compaction iteration, it
will take the gc_block lock to avoid racing with functionalities like
detach ancestor (if it's triggered via manual compaction API without
scheduling, then it won't take the lock)
---------
Signed-off-by: Alex Chi Z <chi@neon.tech>
Co-authored-by: Arpad Müller <arpad-m@users.noreply.github.com>
## Problem
We saw a tenant get stuck when it had been put into Pause scheduling
mode to pin it to a pageserver, then it was left idle for a while and
the control plane tried to detach it.
Close: https://github.com/neondatabase/neon/issues/9957
## Summary of changes
- When changing policy to Detached or Secondary, set the scheduling
policy to Active.
- Add a test that exercises this
- When persisting tenant shards, set their `generation_pageserver` to
null if the placement policy is not Attached (this enables consistency
checks to work, and avoids leaving state in the DB that could be
confusing/misleading in future)
## Problem
part of https://github.com/neondatabase/neon/issues/9114, stacked PR
over #9809
The compaction scheduler now schedules partial compaction jobs.
## Summary of changes
* Add the compaction job splitter based on size.
* Schedule subcompactions using the compaction scheduler.
* Test subcompaction scheduler in the smoke regress test.
* Temporarily disable layer map checks
---------
Signed-off-by: Alex Chi Z <chi@neon.tech>
## Problem
part of https://github.com/neondatabase/neon/issues/9114
gc-compaction can take a long time. This patch adds support for
scheduling a gc-compaction job. The compaction loop will first handle
L0->L1 compaction, and then gc compaction. The scheduled jobs are stored
in a non-persistent queue within the tenant structure.
This will be the building block for the partial compaction trigger -- if
the system determines that we need to do a gc compaction, it will
partition the keyspace and schedule several jobs. Each of these jobs
will run for a short amount of time (i.e, 1 min). L0 compaction will be
prioritized over gc compaction.
## Summary of changes
* Add compaction scheduler in tenant.
* Run scheduled compaction in integration tests.
* Change the manual compaction API to allow schedule a compaction
instead of immediately doing it.
* Add LSN upper bound as gc-compaction parameter. If we schedule partial
compactions, gc_cutoff might move across different runs. Therefore, we
need to pass a pre-determined gc_cutoff beforehand. (TODO: support LSN
lower bound so that we can compact arbitrary "rectangle" in the layer
map)
* Refactor the gc_compaction internal interface.
---------
Signed-off-by: Alex Chi Z <chi@neon.tech>
Co-authored-by: Christian Schwarz <christian@neon.tech>
(stacked on #9990 and #9995)
Partially fixes#1287 with a custom option field to enable the fixed
behaviour. This allows us to gradually roll out the fix without silently
changing the observed behaviour for our customers.
related to https://github.com/neondatabase/cloud/issues/15284
Before this PR, some override callbacks used `.default()`, others
used `.setdefault()`.
As of this PR, all callbacks use `.setdefault()` which I think is least
prone to failure.
Aligning on a single way will set the right example for future tests
that need such customization.
The `test_pageserver_getpage_throttle.py` technically is a change in
behavior: before, it replaced the `tenant_config` field, now it just
configures the throttle. This is what I believe is intended anyway.
Support tenant manifests in the storage scrubber:
* list the manifests, order them by generation
* delete all manifests except for the two most recent generations
* for the latest manifest: try parsing it.
I've tested this patch by running the against a staging bucket and it
successfully deleted stuff (and avoided deleting the latest two
generations).
In follow-up work, we might want to also check some invariants of the
manifest, as mentioned in #8088.
Part of #9386
Part of #8088
---------
Co-authored-by: Christian Schwarz <christian@neon.tech>
## Problem
Sharded tenants should be run in a single AZ for best performance, so
that computes have AZ-local latency to all the shards.
Part of https://github.com/neondatabase/neon/issues/8264
## Summary of changes
- When we split a tenant, instead of updating each shard's preferred AZ
to wherever it is scheduled, propagate the preferred AZ from the parent.
- Drop the check in `test_shard_preferred_azs` that asserts shards end
up in their preferred AZ: this will not be true again until the
optimize_attachment logic is updated to make this so. The existing check
wasn't testing anything about scheduling, it was just asserting that we
set preferred AZ in a way that matches the way things happen to be
scheduled at time of split.
## Problem
In the batching PR
- https://github.com/neondatabase/neon/pull/9870
I stopped deducting the time-spent-in-throttle fro latency metrics,
i.e.,
- smgr latency metrics (`SmgrOpTimer`)
- basebackup latency (+scan latency, which I think is part of
basebackup).
The reason for stopping the deduction was that with the introduction of
batching, the trick with tracking time-spent-in-throttle inside
RequestContext and swap-replacing it from the `impl Drop for
SmgrOpTimer` no longer worked with >1 requests in a batch.
However, deducting time-spent-in-throttle is desirable because our
internal latency SLO definition does not account for throttling.
## Summary of changes
- Redefine throttling to be a page_service pagestream request throttle
instead of a throttle for repository `Key` reads through `Timeline::get`
/ `Timeline::get_vectored`.
- This means reads done by `basebackup` are no longer subject to any
throttle.
- The throttle applies after batching, before handling of the request.
- Drive-by fix: make throttle sensitive to cancellation.
- Rename metric label `kind` from `timeline_get` to `pagestream` to
reflect the new scope of throttling.
To avoid config format breakage, we leave the config field named
`timeline_get_throttle` and ignore the `task_kinds` field.
This will be cleaned up in a future PR.
## Trade-Offs
Ideally, we would apply the throttle before reading a request off the
connection, so that we queue the minimal amount of work inside the
process.
However, that's not possible because we need to do shard routing.
The redefinition of the throttle to limit pagestream request rate
instead of repository `Key` rate comes with several downsides:
- We're no longer able to use the throttle mechanism for other other
tasks, e.g. image layer creation.
However, in practice, we never used that capability anyways.
- We no longer throttle basebackup.
This PR
- fixes smgr metrics https://github.com/neondatabase/neon/issues/9925
- adds an additional startup log line logging the current batching
config
- adds a histogram of batch sizes global and per-tenant
- adds a metric exposing the current batching config
The issue described #9925 is that before this PR, request latency was
only observed *after* batching.
This means that smgr latency metrics (most importantly getpage latency)
don't account for
- `wait_lsn` time
- time spent waiting for batch to fill up / the executor stage to pick
up the batch.
The fix is to use a per-request batching timer, like we did before the
initial batching PR.
We funnel those timers through the entire request lifecycle.
I noticed that even before the initial batching changes, we weren't
accounting for the time spent writing & flushing the response to the
wire.
This PR drive-by fixes that deficiency by dropping the timers at the
very end of processing the batch, i.e., after the `pgb.flush()` call.
I was **unable to maintain the behavior that we deduct
time-spent-in-throttle from various latency metrics.
The reason is that we're using a *single* counter in `RequestContext` to
track micros spent in throttle.
But there are *N* metrics timers in the batch, one per request.
As a consequence, the practice of consuming the counter in the drop
handler of each timer no longer works because all but the first timer
will encounter error `close() called on closed state`.
A failed attempt to maintain the current behavior can be found in
https://github.com/neondatabase/neon/pull/9951.
So, this PR remvoes the deduction behavior from all metrics.
I started a discussion on Slack about it the implications this has for
our internal SLO calculation:
https://neondb.slack.com/archives/C033RQ5SPDH/p1732910861704029
# Refs
- fixes https://github.com/neondatabase/neon/issues/9925
- sub-issue https://github.com/neondatabase/neon/issues/9377
- epic: https://github.com/neondatabase/neon/issues/9376
Before this PR, the storcon_cli didn't have a way to show the
tenant-wide information of the TenantDescribeResponse.
Sadly, the `Serialize` impl for the tenant config doesn't skip on
`None`, so, the output becomes a bit bloated.
Maybe we can use `skip_serializing_if(Option::is_none)` in the future.
=> https://github.com/neondatabase/neon/issues/9983
## Problem
I was touching `test_storage_controller_node_deletion` because for AZ
scheduling work I was adding a change to the storage controller (kick
secondaries during optimisation) that made a FIXME in this test defunct.
While looking at it I also realized that we can easily fix the way node
deletion currently doesn't use a proper ScheduleContext, using the
iterator type recently added for that purpose.
## Summary of changes
- A testing-only behavior in storage controller where if a secondary
location isn't yet ready during optimisation, it will be actively
polled.
- Remove workaround in `test_storage_controller_node_deletion` that
previously was needed because optimisation would get stuck on cold
secondaries.
- Update node deletion code to use a `TenantShardContextIterator` and
thereby a proper ScheduleContext
Improves `wait_until` by:
* Use `timeout` instead of `iterations`. This allows changing the
timeout/interval parameters independently.
* Make `timeout` and `interval` optional (default 20s and 0.5s). Most
callers don't care.
* Only output status every 1s by default, and add optional
`status_interval` parameter.
* Remove `show_intermediate_error`, this was always emitted anyway.
Most callers have been updated to use the defaults, except where they
had good reason otherwise.
## Problem
See https://neondb.slack.com/archives/C04DGM6SMTM/p1732110190129479
We observe the following error in the logs
```
[XX000] ERROR: [NEON_SMGR] [shard 3] Incorrect prefetch read: status=1 response=0x7fafef335138 my=128 receive=128
```
most likely caused by changing `neon.readahead_buffer_size`
## Summary of changes
1. Copy shard state
2. Do not use prefetch_set_unused in readahead_buffer_resize
3. Change prefetch buffer overflow criteria
---------
Co-authored-by: Konstantin Knizhnik <knizhnik@neon.tech>
## Problem
We used `set_path()` to replace the database name in the connection
string. It automatically does url-safe encoding if the path is not
already encoded, but it does it as per the URL standard, which assumes
that tabs can be safely removed from the path without changing the
meaning of the URL. See, e.g.,
https://url.spec.whatwg.org/#concept-basic-url-parser. It also breaks
for DBs with properly %-encoded names, like with `%20`, as they are kept
intact, but actually should be escaped.
Yet, this is not true for Postgres, where it's completely valid to have
trailing tabs in the database name.
I think this is the PR that caused this regression
https://github.com/neondatabase/neon/pull/9717, as it switched from
`postgres::config::Config` back to `set_path()`.
This was fixed a while ago already [1], btw, I just haven't added a test
to catch this regression back then :(
## Summary of changes
This commit changes the code back to use
`postgres/tokio_postgres::Config` everywhere.
While on it, also do some changes around, as I had to touch this code:
1. Bump some logging from `debug` to `info` in the spec apply path. We
do not use `debug` in prod, and it was tricky to understand what was
going on with this bug in prod.
2. Refactor configuration concurrency calculation code so it was
reusable. Yet, still keep `1` in the case of reconfiguration. The
database can be actively used at this moment, so we cannot guarantee
that there will be enough spare connection slots, and the underlying
code won't handle connection errors properly.
3. Simplify the installed extensions code. It was spawning a blocking
task inside async function, which doesn't make much sense. Instead, just
have a main sync function and call it with `spawn_blocking` in the API
code -- the only place we need it to be async.
4. Add regression python test to cover this and related problems in the
future. Also, add more extensive testing of schema dump and DBs and
roles listing API.
[1]:
4d1e48f3b9
[2]:
https://www.postgresql.org/message-id/flat/20151023003445.931.91267%40wrigleys.postgresql.orgResolvesneondatabase/cloud#20869
## Problem
https://github.com/neondatabase/neon/pull/9746 lifted decoding and
interpretation of WAL to the safekeeper.
This reduced the ingested amount on the pageservers by around 10x for a
tenant with 8 shards, but doubled
the ingested amount for single sharded tenants.
Also, https://github.com/neondatabase/neon/pull/9746 uses bincode which
doesn't support schema evolution.
Technically the schema can be evolved, but it's very cumbersome.
## Summary of changes
This patch set addresses both problems by adding protobuf support for
the interpreted wal records and adding compression support. Compressed
protobuf reduced the ingested amount by 100x on the 32 shards
`test_sharded_ingest` case (compared to non-interpreted proto). For the
1 shard case the reduction is 5x.
Sister change to `rust-postgres` is
[here](https://github.com/neondatabase/rust-postgres/pull/33).
## Links
Related: https://github.com/neondatabase/neon/issues/9336
Epic: https://github.com/neondatabase/neon/issues/9329
