Files
neon/pageserver/src/tenant/storage_layer/inmemory_layer.rs
Vlad Lazar 2723a8156a pageserver: faster and simpler inmem layer vec read (#8469)
## Problem
The in-memory layer vectored read was very slow in some conditions
(walingest::test_large_rel) test. Upon profiling, I realised that 80% of
the time was spent building up the binary heap of reads. This stage
isn't actually needed.

## Summary of changes
Remove the planning stage as we never took advantage of it in order to
merge reads. There should be no functional change from this patch.
2024-07-24 14:23:03 +01:00

711 lines
26 KiB
Rust

//! An in-memory layer stores recently received key-value pairs.
//!
//! The "in-memory" part of the name is a bit misleading: the actual page versions are
//! held in an ephemeral file, not in memory. The metadata for each page version, i.e.
//! its position in the file, is kept in memory, though.
//!
use crate::config::PageServerConf;
use crate::context::{PageContentKind, RequestContext, RequestContextBuilder};
use crate::page_cache::PAGE_SZ;
use crate::repository::{Key, Value};
use crate::tenant::block_io::{BlockCursor, BlockReader, BlockReaderRef};
use crate::tenant::ephemeral_file::EphemeralFile;
use crate::tenant::storage_layer::ValueReconstructResult;
use crate::tenant::timeline::GetVectoredError;
use crate::tenant::{PageReconstructError, Timeline};
use crate::{l0_flush, page_cache, walrecord};
use anyhow::{anyhow, ensure, Result};
use pageserver_api::keyspace::KeySpace;
use pageserver_api::models::InMemoryLayerInfo;
use pageserver_api::shard::TenantShardId;
use std::collections::BTreeMap;
use std::sync::{Arc, OnceLock};
use std::time::Instant;
use tracing::*;
use utils::{bin_ser::BeSer, id::TimelineId, lsn::Lsn, vec_map::VecMap};
// avoid binding to Write (conflicts with std::io::Write)
// while being able to use std::fmt::Write's methods
use crate::metrics::TIMELINE_EPHEMERAL_BYTES;
use std::cmp::Ordering;
use std::fmt::Write;
use std::ops::Range;
use std::sync::atomic::Ordering as AtomicOrdering;
use std::sync::atomic::{AtomicU64, AtomicUsize};
use tokio::sync::{RwLock, RwLockWriteGuard};
use super::{
DeltaLayerWriter, ResidentLayer, ValueReconstructSituation, ValueReconstructState,
ValuesReconstructState,
};
#[derive(Debug, PartialEq, Eq, Clone, Copy, Hash)]
pub(crate) struct InMemoryLayerFileId(page_cache::FileId);
pub struct InMemoryLayer {
conf: &'static PageServerConf,
tenant_shard_id: TenantShardId,
timeline_id: TimelineId,
file_id: InMemoryLayerFileId,
/// This layer contains all the changes from 'start_lsn'. The
/// start is inclusive.
start_lsn: Lsn,
/// Frozen layers have an exclusive end LSN.
/// Writes are only allowed when this is `None`.
pub(crate) end_lsn: OnceLock<Lsn>,
/// Used for traversal path. Cached representation of the in-memory layer before frozen.
local_path_str: Arc<str>,
/// Used for traversal path. Cached representation of the in-memory layer after frozen.
frozen_local_path_str: OnceLock<Arc<str>>,
opened_at: Instant,
/// The above fields never change, except for `end_lsn`, which is only set once.
/// All other changing parts are in `inner`, and protected by a mutex.
inner: RwLock<InMemoryLayerInner>,
}
impl std::fmt::Debug for InMemoryLayer {
fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
f.debug_struct("InMemoryLayer")
.field("start_lsn", &self.start_lsn)
.field("end_lsn", &self.end_lsn)
.field("inner", &self.inner)
.finish()
}
}
pub struct InMemoryLayerInner {
/// All versions of all pages in the layer are kept here. Indexed
/// by block number and LSN. The value is an offset into the
/// ephemeral file where the page version is stored.
index: BTreeMap<Key, VecMap<Lsn, u64>>,
/// The values are stored in a serialized format in this file.
/// Each serialized Value is preceded by a 'u32' length field.
/// PerSeg::page_versions map stores offsets into this file.
file: EphemeralFile,
resource_units: GlobalResourceUnits,
}
impl std::fmt::Debug for InMemoryLayerInner {
fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
f.debug_struct("InMemoryLayerInner").finish()
}
}
/// State shared by all in-memory (ephemeral) layers. Updated infrequently during background ticks in Timeline,
/// to minimize contention.
///
/// This global state is used to implement behaviors that require a global view of the system, e.g.
/// rolling layers proactively to limit the total amount of dirty data.
pub(crate) struct GlobalResources {
// Limit on how high dirty_bytes may grow before we start freezing layers to reduce it.
// Zero means unlimited.
pub(crate) max_dirty_bytes: AtomicU64,
// How many bytes are in all EphemeralFile objects
dirty_bytes: AtomicU64,
// How many layers are contributing to dirty_bytes
dirty_layers: AtomicUsize,
}
// Per-timeline RAII struct for its contribution to [`GlobalResources`]
struct GlobalResourceUnits {
// How many dirty bytes have I added to the global dirty_bytes: this guard object is responsible
// for decrementing the global counter by this many bytes when dropped.
dirty_bytes: u64,
}
impl GlobalResourceUnits {
// Hint for the layer append path to update us when the layer size differs from the last
// call to update_size by this much. If we don't reach this threshold, we'll still get
// updated when the Timeline "ticks" in the background.
const MAX_SIZE_DRIFT: u64 = 10 * 1024 * 1024;
fn new() -> Self {
GLOBAL_RESOURCES
.dirty_layers
.fetch_add(1, AtomicOrdering::Relaxed);
Self { dirty_bytes: 0 }
}
/// Do not call this frequently: all timelines will write to these same global atomics,
/// so this is a relatively expensive operation. Wait at least a few seconds between calls.
///
/// Returns the effective layer size limit that should be applied, if any, to keep
/// the total number of dirty bytes below the configured maximum.
fn publish_size(&mut self, size: u64) -> Option<u64> {
let new_global_dirty_bytes = match size.cmp(&self.dirty_bytes) {
Ordering::Equal => GLOBAL_RESOURCES.dirty_bytes.load(AtomicOrdering::Relaxed),
Ordering::Greater => {
let delta = size - self.dirty_bytes;
let old = GLOBAL_RESOURCES
.dirty_bytes
.fetch_add(delta, AtomicOrdering::Relaxed);
old + delta
}
Ordering::Less => {
let delta = self.dirty_bytes - size;
let old = GLOBAL_RESOURCES
.dirty_bytes
.fetch_sub(delta, AtomicOrdering::Relaxed);
old - delta
}
};
// This is a sloppy update: concurrent updates to the counter will race, and the exact
// value of the metric might not be the exact latest value of GLOBAL_RESOURCES::dirty_bytes.
// That's okay: as long as the metric contains some recent value, it doesn't have to always
// be literally the last update.
TIMELINE_EPHEMERAL_BYTES.set(new_global_dirty_bytes);
self.dirty_bytes = size;
let max_dirty_bytes = GLOBAL_RESOURCES
.max_dirty_bytes
.load(AtomicOrdering::Relaxed);
if max_dirty_bytes > 0 && new_global_dirty_bytes > max_dirty_bytes {
// Set the layer file limit to the average layer size: this implies that all above-average
// sized layers will be elegible for freezing. They will be frozen in the order they
// next enter publish_size.
Some(
new_global_dirty_bytes
/ GLOBAL_RESOURCES.dirty_layers.load(AtomicOrdering::Relaxed) as u64,
)
} else {
None
}
}
// Call publish_size if the input size differs from last published size by more than
// the drift limit
fn maybe_publish_size(&mut self, size: u64) {
let publish = match size.cmp(&self.dirty_bytes) {
Ordering::Equal => false,
Ordering::Greater => size - self.dirty_bytes > Self::MAX_SIZE_DRIFT,
Ordering::Less => self.dirty_bytes - size > Self::MAX_SIZE_DRIFT,
};
if publish {
self.publish_size(size);
}
}
}
impl Drop for GlobalResourceUnits {
fn drop(&mut self) {
GLOBAL_RESOURCES
.dirty_layers
.fetch_sub(1, AtomicOrdering::Relaxed);
// Subtract our contribution to the global total dirty bytes
self.publish_size(0);
}
}
pub(crate) static GLOBAL_RESOURCES: GlobalResources = GlobalResources {
max_dirty_bytes: AtomicU64::new(0),
dirty_bytes: AtomicU64::new(0),
dirty_layers: AtomicUsize::new(0),
};
impl InMemoryLayer {
pub(crate) fn file_id(&self) -> InMemoryLayerFileId {
self.file_id
}
pub(crate) fn get_timeline_id(&self) -> TimelineId {
self.timeline_id
}
pub(crate) fn info(&self) -> InMemoryLayerInfo {
let lsn_start = self.start_lsn;
if let Some(&lsn_end) = self.end_lsn.get() {
InMemoryLayerInfo::Frozen { lsn_start, lsn_end }
} else {
InMemoryLayerInfo::Open { lsn_start }
}
}
pub(crate) fn try_len(&self) -> Option<u64> {
self.inner.try_read().map(|i| i.file.len()).ok()
}
pub(crate) fn assert_writable(&self) {
assert!(self.end_lsn.get().is_none());
}
pub(crate) fn end_lsn_or_max(&self) -> Lsn {
self.end_lsn.get().copied().unwrap_or(Lsn::MAX)
}
pub(crate) fn get_lsn_range(&self) -> Range<Lsn> {
self.start_lsn..self.end_lsn_or_max()
}
pub(crate) fn local_path_str(&self) -> &Arc<str> {
self.frozen_local_path_str
.get()
.unwrap_or(&self.local_path_str)
}
/// debugging function to print out the contents of the layer
///
/// this is likely completly unused
pub async fn dump(&self, verbose: bool, ctx: &RequestContext) -> Result<()> {
let inner = self.inner.read().await;
let end_str = self.end_lsn_or_max();
println!(
"----- in-memory layer for tli {} LSNs {}-{} ----",
self.timeline_id, self.start_lsn, end_str,
);
if !verbose {
return Ok(());
}
let cursor = inner.file.block_cursor();
let mut buf = Vec::new();
for (key, vec_map) in inner.index.iter() {
for (lsn, pos) in vec_map.as_slice() {
let mut desc = String::new();
cursor.read_blob_into_buf(*pos, &mut buf, ctx).await?;
let val = Value::des(&buf);
match val {
Ok(Value::Image(img)) => {
write!(&mut desc, " img {} bytes", img.len())?;
}
Ok(Value::WalRecord(rec)) => {
let wal_desc = walrecord::describe_wal_record(&rec).unwrap();
write!(
&mut desc,
" rec {} bytes will_init: {} {}",
buf.len(),
rec.will_init(),
wal_desc
)?;
}
Err(err) => {
write!(&mut desc, " DESERIALIZATION ERROR: {}", err)?;
}
}
println!(" key {} at {}: {}", key, lsn, desc);
}
}
Ok(())
}
/// Look up given value in the layer.
pub(crate) async fn get_value_reconstruct_data(
&self,
key: Key,
lsn_range: Range<Lsn>,
reconstruct_state: &mut ValueReconstructState,
ctx: &RequestContext,
) -> anyhow::Result<ValueReconstructResult> {
ensure!(lsn_range.start >= self.start_lsn);
let mut need_image = true;
let ctx = RequestContextBuilder::extend(ctx)
.page_content_kind(PageContentKind::InMemoryLayer)
.build();
let inner = self.inner.read().await;
let reader = inner.file.block_cursor();
// Scan the page versions backwards, starting from `lsn`.
if let Some(vec_map) = inner.index.get(&key) {
let slice = vec_map.slice_range(lsn_range);
for (entry_lsn, pos) in slice.iter().rev() {
let buf = reader.read_blob(*pos, &ctx).await?;
let value = Value::des(&buf)?;
match value {
Value::Image(img) => {
reconstruct_state.img = Some((*entry_lsn, img));
return Ok(ValueReconstructResult::Complete);
}
Value::WalRecord(rec) => {
let will_init = rec.will_init();
reconstruct_state.records.push((*entry_lsn, rec));
if will_init {
// This WAL record initializes the page, so no need to go further back
need_image = false;
break;
}
}
}
}
}
// release lock on 'inner'
// If an older page image is needed to reconstruct the page, let the
// caller know.
if need_image {
Ok(ValueReconstructResult::Continue)
} else {
Ok(ValueReconstructResult::Complete)
}
}
// Look up the keys in the provided keyspace and update
// the reconstruct state with whatever is found.
//
// If the key is cached, go no further than the cached Lsn.
pub(crate) async fn get_values_reconstruct_data(
&self,
keyspace: KeySpace,
end_lsn: Lsn,
reconstruct_state: &mut ValuesReconstructState,
ctx: &RequestContext,
) -> Result<(), GetVectoredError> {
let ctx = RequestContextBuilder::extend(ctx)
.page_content_kind(PageContentKind::InMemoryLayer)
.build();
let inner = self.inner.read().await;
let reader = inner.file.block_cursor();
for range in keyspace.ranges.iter() {
for (key, vec_map) in inner.index.range(range.start..range.end) {
let lsn_range = match reconstruct_state.get_cached_lsn(key) {
Some(cached_lsn) => (cached_lsn + 1)..end_lsn,
None => self.start_lsn..end_lsn,
};
let slice = vec_map.slice_range(lsn_range);
for (entry_lsn, pos) in slice.iter().rev() {
// TODO: this uses the page cache => https://github.com/neondatabase/neon/issues/8183
let buf = reader.read_blob(*pos, &ctx).await;
if let Err(e) = buf {
reconstruct_state
.on_key_error(*key, PageReconstructError::from(anyhow!(e)));
break;
}
let value = Value::des(&buf.unwrap());
if let Err(e) = value {
reconstruct_state
.on_key_error(*key, PageReconstructError::from(anyhow!(e)));
break;
}
let key_situation =
reconstruct_state.update_key(key, *entry_lsn, value.unwrap());
if key_situation == ValueReconstructSituation::Complete {
break;
}
}
}
}
reconstruct_state.on_lsn_advanced(&keyspace, self.start_lsn);
Ok(())
}
}
fn inmem_layer_display(mut f: impl Write, start_lsn: Lsn, end_lsn: Lsn) -> std::fmt::Result {
write!(f, "inmem-{:016X}-{:016X}", start_lsn.0, end_lsn.0)
}
fn inmem_layer_log_display(
mut f: impl Write,
timeline: TimelineId,
start_lsn: Lsn,
end_lsn: Lsn,
) -> std::fmt::Result {
write!(f, "timeline {} in-memory ", timeline)?;
inmem_layer_display(f, start_lsn, end_lsn)
}
impl std::fmt::Display for InMemoryLayer {
fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
let end_lsn = self.end_lsn_or_max();
inmem_layer_display(f, self.start_lsn, end_lsn)
}
}
impl InMemoryLayer {
/// Get layer size.
pub async fn size(&self) -> Result<u64> {
let inner = self.inner.read().await;
Ok(inner.file.len())
}
/// Create a new, empty, in-memory layer
pub async fn create(
conf: &'static PageServerConf,
timeline_id: TimelineId,
tenant_shard_id: TenantShardId,
start_lsn: Lsn,
ctx: &RequestContext,
) -> Result<InMemoryLayer> {
trace!("initializing new empty InMemoryLayer for writing on timeline {timeline_id} at {start_lsn}");
let file = EphemeralFile::create(conf, tenant_shard_id, timeline_id, ctx).await?;
let key = InMemoryLayerFileId(file.page_cache_file_id());
Ok(InMemoryLayer {
file_id: key,
local_path_str: {
let mut buf = String::new();
inmem_layer_log_display(&mut buf, timeline_id, start_lsn, Lsn::MAX).unwrap();
buf.into()
},
frozen_local_path_str: OnceLock::new(),
conf,
timeline_id,
tenant_shard_id,
start_lsn,
end_lsn: OnceLock::new(),
opened_at: Instant::now(),
inner: RwLock::new(InMemoryLayerInner {
index: BTreeMap::new(),
file,
resource_units: GlobalResourceUnits::new(),
}),
})
}
// Write operations
/// Common subroutine of the public put_wal_record() and put_page_image() functions.
/// Adds the page version to the in-memory tree
pub(crate) async fn put_value(
&self,
key: Key,
lsn: Lsn,
buf: &[u8],
ctx: &RequestContext,
) -> Result<()> {
let mut inner = self.inner.write().await;
self.assert_writable();
self.put_value_locked(&mut inner, key, lsn, buf, ctx).await
}
async fn put_value_locked(
&self,
locked_inner: &mut RwLockWriteGuard<'_, InMemoryLayerInner>,
key: Key,
lsn: Lsn,
buf: &[u8],
ctx: &RequestContext,
) -> Result<()> {
trace!("put_value key {} at {}/{}", key, self.timeline_id, lsn);
let off = {
locked_inner
.file
.write_blob(
buf,
&RequestContextBuilder::extend(ctx)
.page_content_kind(PageContentKind::InMemoryLayer)
.build(),
)
.await?
};
let vec_map = locked_inner.index.entry(key).or_default();
let old = vec_map.append_or_update_last(lsn, off).unwrap().0;
if old.is_some() {
// We already had an entry for this LSN. That's odd..
warn!("Key {} at {} already exists", key, lsn);
}
let size = locked_inner.file.len();
locked_inner.resource_units.maybe_publish_size(size);
Ok(())
}
pub(crate) fn get_opened_at(&self) -> Instant {
self.opened_at
}
pub(crate) async fn tick(&self) -> Option<u64> {
let mut inner = self.inner.write().await;
let size = inner.file.len();
inner.resource_units.publish_size(size)
}
pub(crate) async fn put_tombstones(&self, _key_ranges: &[(Range<Key>, Lsn)]) -> Result<()> {
// TODO: Currently, we just leak the storage for any deleted keys
Ok(())
}
/// Records the end_lsn for non-dropped layers.
/// `end_lsn` is exclusive
pub async fn freeze(&self, end_lsn: Lsn) {
let inner = self.inner.write().await;
assert!(
self.start_lsn < end_lsn,
"{} >= {}",
self.start_lsn,
end_lsn
);
self.end_lsn.set(end_lsn).expect("end_lsn set only once");
self.frozen_local_path_str
.set({
let mut buf = String::new();
inmem_layer_log_display(&mut buf, self.get_timeline_id(), self.start_lsn, end_lsn)
.unwrap();
buf.into()
})
.expect("frozen_local_path_str set only once");
for vec_map in inner.index.values() {
for (lsn, _pos) in vec_map.as_slice() {
assert!(*lsn < end_lsn);
}
}
}
/// Write this frozen in-memory layer to disk. If `key_range` is set, the delta
/// layer will only contain the key range the user specifies, and may return `None`
/// if there are no matching keys.
///
/// Returns a new delta layer with all the same data as this in-memory layer
pub(crate) async fn write_to_disk(
&self,
timeline: &Arc<Timeline>,
ctx: &RequestContext,
key_range: Option<Range<Key>>,
) -> Result<Option<ResidentLayer>> {
// Grab the lock in read-mode. We hold it over the I/O, but because this
// layer is not writeable anymore, no one should be trying to acquire the
// write lock on it, so we shouldn't block anyone. There's one exception
// though: another thread might have grabbed a reference to this layer
// in `get_layer_for_write' just before the checkpointer called
// `freeze`, and then `write_to_disk` on it. When the thread gets the
// lock, it will see that it's not writeable anymore and retry, but it
// would have to wait until we release it. That race condition is very
// rare though, so we just accept the potential latency hit for now.
let inner = self.inner.read().await;
let l0_flush_global_state = timeline.l0_flush_global_state.inner().clone();
use l0_flush::Inner;
let _concurrency_permit = match &*l0_flush_global_state {
Inner::PageCached => None,
Inner::Direct { semaphore, .. } => Some(semaphore.acquire().await),
};
let end_lsn = *self.end_lsn.get().unwrap();
let key_count = if let Some(key_range) = key_range {
inner
.index
.iter()
.filter(|(k, _)| key_range.contains(k))
.count()
} else {
inner.index.len()
};
if key_count == 0 {
return Ok(None);
}
let mut delta_layer_writer = DeltaLayerWriter::new(
self.conf,
self.timeline_id,
self.tenant_shard_id,
Key::MIN,
self.start_lsn..end_lsn,
ctx,
)
.await?;
match &*l0_flush_global_state {
l0_flush::Inner::PageCached => {
let ctx = RequestContextBuilder::extend(ctx)
.page_content_kind(PageContentKind::InMemoryLayer)
.build();
let mut buf = Vec::new();
let cursor = inner.file.block_cursor();
for (key, vec_map) in inner.index.iter() {
// Write all page versions
for (lsn, pos) in vec_map.as_slice() {
cursor.read_blob_into_buf(*pos, &mut buf, &ctx).await?;
let will_init = Value::des(&buf)?.will_init();
let res;
(buf, res) = delta_layer_writer
.put_value_bytes(*key, *lsn, buf, will_init, &ctx)
.await;
res?;
}
}
}
l0_flush::Inner::Direct { .. } => {
let file_contents: Vec<u8> = inner.file.load_to_vec(ctx).await?;
assert_eq!(
file_contents.len() % PAGE_SZ,
0,
"needed by BlockReaderRef::Slice"
);
assert_eq!(file_contents.len(), {
let written = usize::try_from(inner.file.len()).unwrap();
if written % PAGE_SZ == 0 {
written
} else {
written.checked_add(PAGE_SZ - (written % PAGE_SZ)).unwrap()
}
});
let cursor = BlockCursor::new(BlockReaderRef::Slice(&file_contents));
let mut buf = Vec::new();
for (key, vec_map) in inner.index.iter() {
// Write all page versions
for (lsn, pos) in vec_map.as_slice() {
// TODO: once we have blob lengths in the in-memory index, we can
// 1. get rid of the blob_io / BlockReaderRef::Slice business and
// 2. load the file contents into a Bytes and
// 3. the use `Bytes::slice` to get the `buf` that is our blob
// 4. pass that `buf` into `put_value_bytes`
// => https://github.com/neondatabase/neon/issues/8183
cursor.read_blob_into_buf(*pos, &mut buf, ctx).await?;
let will_init = Value::des(&buf)?.will_init();
let res;
(buf, res) = delta_layer_writer
.put_value_bytes(*key, *lsn, buf, will_init, ctx)
.await;
res?;
}
}
}
}
// MAX is used here because we identify L0 layers by full key range
let delta_layer = delta_layer_writer.finish(Key::MAX, timeline, ctx).await?;
// Hold the permit until all the IO is done, including the fsync in `delta_layer_writer.finish()``.
//
// If we didn't and our caller drops this future, tokio-epoll-uring would extend the lifetime of
// the `file_contents: Vec<u8>` until the IO is done, but not the permit's lifetime.
// Thus, we'd have more concurrenct `Vec<u8>` in existence than the semaphore allows.
//
// We hold across the fsync so that on ext4 mounted with data=ordered, all the kernel page cache pages
// we dirtied when writing to the filesystem have been flushed and marked !dirty.
drop(_concurrency_permit);
Ok(Some(delta_layer))
}
}