Because it wasn't recursive, there was a limit to the depth of updates.
This work is necessary because as we teach neon_local and compute_ctl
that the content in --spec-path should match a similar structure we get
from the control plane, the spec object itself will no longer be
toplevel. It will be under the "spec" key.
Signed-off-by: Tristan Partin <tristan@neon.tech>