Files
tantivy/bitpacker/src/bitpacker.rs
PSeitz 7ce950f141 add method to fetch block of first vals in columnar (#2330)
* add method to fetch block of first vals in columnar

add method to fetch block of first vals in columnar (this is way faster
than single calls for full columns)
add benchmark
fix import warnings

```
test bench_get_block_first_on_full_column                  ... bench:          56 ns/iter (+/- 26)
test bench_get_block_first_on_full_column_single_calls     ... bench:         311 ns/iter (+/- 6)
test bench_get_block_first_on_multi_column                 ... bench:         378 ns/iter (+/- 15)
test bench_get_block_first_on_multi_column_single_calls    ... bench:         546 ns/iter (+/- 13)
test bench_get_block_first_on_optional_column              ... bench:         291 ns/iter (+/- 6)
test bench_get_block_first_on_optional_column_single_calls ... bench:         362 ns/iter (+/- 8)
```

* use remainder
2024-03-15 08:01:47 +01:00

380 lines
13 KiB
Rust

use std::io;
use std::ops::{Range, RangeInclusive};
use bitpacking::{BitPacker as ExternalBitPackerTrait, BitPacker1x};
pub struct BitPacker {
mini_buffer: u64,
mini_buffer_written: usize,
}
impl Default for BitPacker {
fn default() -> Self {
BitPacker::new()
}
}
impl BitPacker {
pub fn new() -> BitPacker {
BitPacker {
mini_buffer: 0u64,
mini_buffer_written: 0,
}
}
#[inline]
pub fn write<TWrite: io::Write + ?Sized>(
&mut self,
val: u64,
num_bits: u8,
output: &mut TWrite,
) -> io::Result<()> {
let num_bits = num_bits as usize;
if self.mini_buffer_written + num_bits > 64 {
self.mini_buffer |= val.wrapping_shl(self.mini_buffer_written as u32);
output.write_all(self.mini_buffer.to_le_bytes().as_ref())?;
self.mini_buffer = val.wrapping_shr((64 - self.mini_buffer_written) as u32);
self.mini_buffer_written = self.mini_buffer_written + num_bits - 64;
} else {
self.mini_buffer |= val << self.mini_buffer_written;
self.mini_buffer_written += num_bits;
if self.mini_buffer_written == 64 {
output.write_all(self.mini_buffer.to_le_bytes().as_ref())?;
self.mini_buffer_written = 0;
self.mini_buffer = 0u64;
}
}
Ok(())
}
pub fn flush<TWrite: io::Write + ?Sized>(&mut self, output: &mut TWrite) -> io::Result<()> {
if self.mini_buffer_written > 0 {
let num_bytes = (self.mini_buffer_written + 7) / 8;
let bytes = self.mini_buffer.to_le_bytes();
output.write_all(&bytes[..num_bytes])?;
self.mini_buffer_written = 0;
self.mini_buffer = 0;
}
Ok(())
}
pub fn close<TWrite: io::Write + ?Sized>(&mut self, output: &mut TWrite) -> io::Result<()> {
self.flush(output)?;
Ok(())
}
}
#[derive(Clone, Debug, Default, Copy)]
pub struct BitUnpacker {
num_bits: u32,
mask: u64,
}
impl BitUnpacker {
/// Creates a bit unpacker, that assumes the same bitwidth for all values.
///
/// The bitunpacker works by doing an unaligned read of 8 bytes.
/// For this reason, values of `num_bits` between
/// [57..63] are forbidden.
pub fn new(num_bits: u8) -> BitUnpacker {
assert!(num_bits <= 7 * 8 || num_bits == 64);
let mask: u64 = if num_bits == 64 {
!0u64
} else {
(1u64 << num_bits) - 1u64
};
BitUnpacker {
num_bits: u32::from(num_bits),
mask,
}
}
pub fn bit_width(&self) -> u8 {
self.num_bits as u8
}
#[inline]
pub fn get(&self, idx: u32, data: &[u8]) -> u64 {
let addr_in_bits = idx * self.num_bits;
let addr = (addr_in_bits >> 3) as usize;
if addr + 8 > data.len() {
if self.num_bits == 0 {
return 0;
}
let bit_shift = addr_in_bits & 7;
return self.get_slow_path(addr, bit_shift, data);
}
let bit_shift = addr_in_bits & 7;
let bytes: [u8; 8] = (&data[addr..addr + 8]).try_into().unwrap();
let val_unshifted_unmasked: u64 = u64::from_le_bytes(bytes);
let val_shifted = val_unshifted_unmasked >> bit_shift;
val_shifted & self.mask
}
#[inline(never)]
fn get_slow_path(&self, addr: usize, bit_shift: u32, data: &[u8]) -> u64 {
let mut bytes: [u8; 8] = [0u8; 8];
let available_bytes = data.len() - addr;
// This function is meant to only be called if we did not have 8 bytes to load.
debug_assert!(available_bytes < 8);
bytes[..available_bytes].copy_from_slice(&data[addr..]);
let val_unshifted_unmasked: u64 = u64::from_le_bytes(bytes);
let val_shifted = val_unshifted_unmasked >> bit_shift;
val_shifted & self.mask
}
// Decodes the range of bitpacked `u32` values with idx
// in [start_idx, start_idx + output.len()).
//
// #Panics
//
// This methods panics if `num_bits` is > 32.
fn get_batch_u32s(&self, start_idx: u32, data: &[u8], output: &mut [u32]) {
assert!(
self.bit_width() <= 32,
"Bitwidth must be <= 32 to use this method."
);
let end_idx = start_idx + output.len() as u32;
let end_bit_read = end_idx * self.num_bits;
let end_byte_read = (end_bit_read + 7) / 8;
assert!(
end_byte_read as usize <= data.len(),
"Requested index is out of bounds."
);
// Simple slow implementation of get_batch_u32s, to deal with our ramps.
let get_batch_ramp = |start_idx: u32, output: &mut [u32]| {
for (out, idx) in output.iter_mut().zip(start_idx..) {
*out = self.get(idx, data) as u32;
}
};
// We use an unrolled routine to decode 32 values at once.
// We therefore decompose our range of values to decode into three ranges:
// - Entrance ramp: [start_idx, fast_track_start) (up to 31 values)
// - Highway: [fast_track_start, fast_track_end) (a length multiple of 32s)
// - Exit ramp: [fast_track_end, start_idx + output.len()) (up to 31 values)
// We want the start of the fast track to start align with bytes.
// A sufficient condition is to start with an idx that is a multiple of 8,
// so highway start is the closest multiple of 8 that is >= start_idx.
let entrance_ramp_len = 8 - (start_idx % 8) % 8;
let highway_start: u32 = start_idx + entrance_ramp_len;
if highway_start + BitPacker1x::BLOCK_LEN as u32 > end_idx {
// We don't have enough values to have even a single block of highway.
// Let's just supply the values the simple way.
get_batch_ramp(start_idx, output);
return;
}
let num_blocks: u32 = (end_idx - highway_start) / BitPacker1x::BLOCK_LEN as u32;
// Entrance ramp
get_batch_ramp(start_idx, &mut output[..entrance_ramp_len as usize]);
// Highway
let mut offset = (highway_start * self.num_bits) as usize / 8;
let mut output_cursor = (highway_start - start_idx) as usize;
for _ in 0..num_blocks {
offset += BitPacker1x.decompress(
&data[offset..],
&mut output[output_cursor..],
self.num_bits as u8,
);
output_cursor += 32;
}
// Exit ramp
let highway_end = highway_start + num_blocks * BitPacker1x::BLOCK_LEN as u32;
get_batch_ramp(highway_end, &mut output[output_cursor..]);
}
pub fn get_ids_for_value_range(
&self,
range: RangeInclusive<u64>,
id_range: Range<u32>,
data: &[u8],
positions: &mut Vec<u32>,
) {
if self.bit_width() > 32 {
self.get_ids_for_value_range_slow(range, id_range, data, positions)
} else {
if *range.start() > u32::MAX as u64 {
positions.clear();
return;
}
let range_u32 = (*range.start() as u32)..=(*range.end()).min(u32::MAX as u64) as u32;
self.get_ids_for_value_range_fast(range_u32, id_range, data, positions)
}
}
fn get_ids_for_value_range_slow(
&self,
range: RangeInclusive<u64>,
id_range: Range<u32>,
data: &[u8],
positions: &mut Vec<u32>,
) {
positions.clear();
for i in id_range {
// If we cared we could make this branchless, but the slow implementation should rarely
// kick in.
let val = self.get(i, data);
if range.contains(&val) {
positions.push(i);
}
}
}
fn get_ids_for_value_range_fast(
&self,
value_range: RangeInclusive<u32>,
id_range: Range<u32>,
data: &[u8],
positions: &mut Vec<u32>,
) {
positions.resize(id_range.len(), 0u32);
self.get_batch_u32s(id_range.start, data, positions);
crate::filter_vec::filter_vec_in_place(value_range, id_range.start, positions)
}
}
#[cfg(test)]
mod test {
use super::{BitPacker, BitUnpacker};
fn create_bitpacker(len: usize, num_bits: u8) -> (BitUnpacker, Vec<u64>, Vec<u8>) {
let mut data = Vec::new();
let mut bitpacker = BitPacker::new();
let max_val: u64 = (1u64 << num_bits as u64) - 1u64;
let vals: Vec<u64> = (0u64..len as u64)
.map(|i| if max_val == 0 { 0 } else { i % max_val })
.collect();
for &val in &vals {
bitpacker.write(val, num_bits, &mut data).unwrap();
}
bitpacker.close(&mut data).unwrap();
assert_eq!(data.len(), ((num_bits as usize) * len + 7) / 8);
let bitunpacker = BitUnpacker::new(num_bits);
(bitunpacker, vals, data)
}
fn test_bitpacker_util(len: usize, num_bits: u8) {
let (bitunpacker, vals, data) = create_bitpacker(len, num_bits);
for (i, val) in vals.iter().enumerate() {
assert_eq!(bitunpacker.get(i as u32, &data), *val);
}
}
#[test]
fn test_bitpacker() {
test_bitpacker_util(10, 3);
test_bitpacker_util(10, 0);
test_bitpacker_util(10, 1);
test_bitpacker_util(6, 14);
test_bitpacker_util(1000, 14);
}
use proptest::prelude::*;
fn num_bits_strategy() -> impl Strategy<Value = u8> {
prop_oneof!(Just(0), Just(1), 2u8..56u8, Just(56), Just(64),)
}
fn vals_strategy() -> impl Strategy<Value = (u8, Vec<u64>)> {
(num_bits_strategy(), 0usize..100usize).prop_flat_map(|(num_bits, len)| {
let max_val = if num_bits == 64 {
u64::MAX
} else {
(1u64 << num_bits as u32) - 1
};
let vals = proptest::collection::vec(0..=max_val, len);
vals.prop_map(move |vals| (num_bits, vals))
})
}
fn test_bitpacker_aux(num_bits: u8, vals: &[u64]) {
let mut buffer: Vec<u8> = Vec::new();
let mut bitpacker = BitPacker::new();
for &val in vals {
bitpacker.write(val, num_bits, &mut buffer).unwrap();
}
bitpacker.flush(&mut buffer).unwrap();
assert_eq!(buffer.len(), (vals.len() * num_bits as usize + 7) / 8);
let bitunpacker = BitUnpacker::new(num_bits);
let max_val = if num_bits == 64 {
u64::MAX
} else {
(1u64 << num_bits) - 1
};
for (i, val) in vals.iter().copied().enumerate() {
assert!(val <= max_val);
assert_eq!(bitunpacker.get(i as u32, &buffer), val);
}
}
proptest::proptest! {
#[test]
fn test_bitpacker_proptest((num_bits, vals) in vals_strategy()) {
test_bitpacker_aux(num_bits, &vals);
}
}
#[test]
#[should_panic]
fn test_get_batch_panics_over_32_bits() {
let bitunpacker = BitUnpacker::new(33);
let mut output: [u32; 1] = [0u32];
bitunpacker.get_batch_u32s(0, &[0, 0, 0, 0, 0, 0, 0, 0], &mut output[..]);
}
#[test]
fn test_get_batch_limit() {
let bitunpacker = BitUnpacker::new(1);
let mut output: [u32; 3] = [0u32, 0u32, 0u32];
bitunpacker.get_batch_u32s(8 * 4 - 3, &[0u8, 0u8, 0u8, 0u8], &mut output[..]);
}
#[test]
#[should_panic]
fn test_get_batch_panics_when_off_scope() {
let bitunpacker = BitUnpacker::new(1);
let mut output: [u32; 3] = [0u32, 0u32, 0u32];
// We are missing exactly one bit.
bitunpacker.get_batch_u32s(8 * 4 - 2, &[0u8, 0u8, 0u8, 0u8], &mut output[..]);
}
proptest::proptest! {
#[test]
fn test_get_batch_u32s_proptest(num_bits in 0u8..=32u8) {
let mask =
if num_bits == 32u8 {
u32::MAX
} else {
(1u32 << num_bits) - 1
};
let mut buffer: Vec<u8> = Vec::new();
let mut bitpacker = BitPacker::new();
for val in 0..100 {
bitpacker.write(val & mask as u64, num_bits, &mut buffer).unwrap();
}
bitpacker.flush(&mut buffer).unwrap();
let bitunpacker = BitUnpacker::new(num_bits);
let mut output: Vec<u32> = Vec::new();
for len in [0, 1, 2, 32, 33, 34, 64] {
for start_idx in 0u32..32u32 {
output.resize(len, 0);
bitunpacker.get_batch_u32s(start_idx, &buffer, &mut output);
for i in 0..len {
let expected = (start_idx + i as u32) & mask;
assert_eq!(output[i], expected);
}
}
}
}
}
}