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* docs: remove unreferenced user guides Drop docs/command-line.md, databases.md, java.md, unity-external-editor.md and docs/media/debug.jpg. Nothing in the repository links to them. Plugin, theme and README assets under docs/ stay. * docs: keep only plugin docs under docs/ Remove docs/themes.md and docs/data-directories.md. Move the upstream Atom One source revisions into THIRD_PARTY_LICENSES.md, drop the links to the removed page, and move the README's WeChat QR code to .github/assets/. * docs: move plugin docs next to plugins/README.md docs/plugins/themes.md and indexing.md move to plugins/. Update the theme doc generator, its test, the plugin template, AGENTS.md and every link to the new paths.