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The run list applies Languages & Frameworks to every configuration it returns (interpreter or toolchain command, PATH, VIRTUAL_ENV, JAVA_HOME, GOROOT, GOPATH, Go module variables, RUSTUP_TOOLCHAIN), and every save sends the user configurations back from that list, so the derived values were written to run.toml: reopening a configuration showed the IDE's whole PATH in its environment, and since applied values never replace existing ones, a saved configuration kept the old toolchain after the interpreter or SDK changed. Saving now drops what settings derive: an environment entry or an absolute command counts as derived when applying settings to the configuration without it produces it again. The user's own values, including ones for the same variables, are kept. Covers python, pytest, django-test, npm, cargo, go, maven, tomcat, ruby, rake, rspec and godot; Gradle stays as saved, as the run list already leaves it unapplied.