feat: migrate s3 client to object_store (#3116)

* feat: migrate s3 client to object_store

* remove multipart from open API

* Remove multipart in favor of a single stream

* progress report

* add progress reader on server side

* small nit fix

* fix read chunk

* Fix TS and python SDK

* Fix download button

* Fix download button object viewer

* fix list

* Better errors

* export loadS3FileContent

* revert changes SDK

* fix browser

* small file list unavailable fix

* Old endpoints throws informative error messages

* Typescript SDK uses raw fetch

* update python SDK

* Error if uploaded file > 50Mb

* revert python SDL changes

* Update python SDK method docs

---------

Co-authored-by: Ruben Fiszel <ruben@windmill.dev>
Co-authored-by: Ruben Fiszel <ruben@rubenfiszel.com>
This commit is contained in:
Guillaume Bouvignies
2024-02-01 16:03:30 +01:00
committed by GitHub
parent 007fa83d48
commit 0003673e8d
18 changed files with 1162 additions and 2086 deletions
+21
View File
@@ -15,6 +15,7 @@ class TestStringMethods(unittest.TestCase):
os.environ["WM_TOKEN"] = self._token
os.environ["BASE_INTERNAL_URL"] = self._host
@unittest.skip("skipping")
def test_duckdb_connection_settings(self):
settings = wmill.duckdb_connection_settings(self._resource_path)
self.assertIsNotNone(settings)
@@ -35,6 +36,7 @@ SET s3_secret_access_key='80yMndIMcyXwEujxVNINQbf0tBlIzRaLPyM2m1n4';
settings = wmill.polars_connection_settings(self._resource_path)
print(settings)
@unittest.skip("skipping")
def test_polars_connection_settings(self):
settings = wmill.polars_connection_settings(self._resource_path)
s3fs_args_expected = {
@@ -59,6 +61,7 @@ SET s3_secret_access_key='80yMndIMcyXwEujxVNINQbf0tBlIzRaLPyM2m1n4';
)
self.assertEqual(settings.polars_cloud_options, polars_cloud_options_expected)
@unittest.skip("skipping")
def test_boto3_connection_settings(self):
settings = wmill.boto3_connection_settings(self._resource_path)
expected_settings = {
@@ -72,6 +75,24 @@ SET s3_secret_access_key='80yMndIMcyXwEujxVNINQbf0tBlIzRaLPyM2m1n4';
self.assertEqual(settings["endpoint_url"], "http://localhost:9000")
self.assertEqual(settings.endpoint_url, "http://localhost:9000")
@unittest.skip("skipping")
def test_download_s3_file(self):
with wmill.load_s3_file_reader(S3Object(s3="region.csv")) as file_content, open(
"region.csv", "wb"
) as output_file:
output_file.write(file_content.read())
@unittest.skip("skipping")
def test_download_s3_file_content(self):
file_content = wmill.load_s3_file(S3Object(s3="region.csv"))
print(file_content)
@unittest.skip("skipping")
def test_upload_s3_file(self):
with open("region.csv", "rb") as file_content:
file_key = wmill.write_s3_file(S3Object(s3="region.csv"), file_content)
print(file_key)
if __name__ == "__main__":
unittest.main()
+28 -50
View File
@@ -386,7 +386,8 @@ class Windmill:
file_content = my_obj_content.decode("utf-8")
'''
"""
return self.load_s3_file_reader(s3object, s3_resource_path).read()
with self.load_s3_file_reader(s3object, s3_resource_path) as file_reader:
return file_reader.read()
def load_s3_file_reader(self, s3object: S3Object, s3_resource_path: str | None) -> BufferedReader:
"""
@@ -396,24 +397,17 @@ class Windmill:
from wmill import S3Object
s3_obj = S3Object(s3="/path/to/my_file.txt")
my_obj_content_reader = client.load_s3_file_reader(s3_obj)
file_content = my_obj_content_reader.read().decode("utf-8")
with wmill.load_s3_file(s3object, s3_resource_path) as file_reader:
print(file_reader.read())
'''
"""
result = S3BufferedReader(
workspace=f"{self.workspace}",
windmill_client=self.client,
file_key=s3object["s3"],
s3_resource_path=s3_resource_path,
)
return result
reader = S3BufferedReader(f"{self.workspace}", self.client, s3object["s3"], s3_resource_path)
return reader
def write_s3_file(
self,
s3object: S3Object | None,
file_content: BufferedReader | bytes,
file_expiration: dt.datetime | None,
s3_resource_path: str | None,
) -> S3Object:
"""
@@ -441,38 +435,25 @@ class Windmill:
else:
raise Exception("Type of file_content not supported")
file_key = s3object["s3"] if s3object is not None else None
parts = []
upload_id = None
chunk = content_reader.read(5 * 1024 * 1024)
if len(chunk) == 0:
raise Exception("File content is empty, nothing to upload")
while True:
chunk_2 = content_reader.read(5 * 1024 * 1024)
reader_done = len(chunk_2) == 0
try:
response = self.post(
f"/w/{self.workspace}/job_helpers/multipart_upload_s3_file",
json={
"file_key": file_key,
"part_content": [b for b in chunk],
"upload_id": upload_id,
"parts": parts,
"is_final": reader_done,
"cancel_upload": False,
"s3_resource_path": s3_resource_path,
"file_expiration": file_expiration.isoformat() if file_expiration else None,
},
).json()
except Exception as e:
raise Exception("Could not write file to S3") from e
parts = response["parts"]
upload_id = response["upload_id"]
file_key = response["file_key"]
if response["is_done"]:
break
chunk = chunk_2
return S3Object(s3=file_key)
query_params = {}
if s3object is not None and s3object["s3"] != "":
query_params["file_key"] = s3object["s3"]
if s3_resource_path is not None and s3_resource_path != "":
query_params["s3_resource_path"] = s3_resource_path
try:
# need a vanilla client b/c content-type is not application/json here
response = httpx.post(
f"{self.base_url}/w/{self.workspace}/job_helpers/upload_s3_file",
headers={"Authorization": f"Bearer {self.token}", "Content-Type": "application/octet-stream"},
params=query_params,
content=content_reader,
verify=self.verify,
timeout=None,
).json()
except Exception as e:
raise Exception("Could not write file to S3") from e
return S3Object(s3=response["file_key"])
def __boto3_connection_settings(self, s3_resource) -> Boto3ConnectionSettings:
endpoint_url_prefix = "https://" if s3_resource["useSSL"] else "http://"
@@ -727,7 +708,7 @@ def boto3_connection_settings(s3_resource_path: str = "") -> Boto3ConnectionSett
@init_global_client
def load_s3_file(s3object: S3Object, s3_resource_path: str = "") -> bytes:
"""
Load the entire content of a file stored in S3
Load the entire content of a file stored in S3 as bytes
"""
return _client.load_s3_file(s3object, s3_resource_path if s3_resource_path != "" else None)
@@ -735,7 +716,7 @@ def load_s3_file(s3object: S3Object, s3_resource_path: str = "") -> bytes:
@init_global_client
def load_s3_file_reader(s3object: S3Object, s3_resource_path: str = "") -> BufferedReader:
"""
Load the content of a file stored in S3 as a buffered reader
Load the content of a file stored in S3
"""
return _client.load_s3_file_reader(s3object, s3_resource_path if s3_resource_path != "" else None)
@@ -744,15 +725,12 @@ def load_s3_file_reader(s3object: S3Object, s3_resource_path: str = "") -> Buffe
def write_s3_file(
s3object: S3Object | None,
file_content: BufferedReader | bytes,
file_expiration: dt.datetime | None = None,
s3_resource_path: str = "",
) -> S3Object:
"""
Upload a file to S3
"""
return _client.write_s3_file(
s3object, file_content, file_expiration, s3_resource_path if s3_resource_path != "" else None
)
return _client.write_s3_file(s3object, file_content, s3_resource_path if s3_resource_path != "" else None)
@init_global_client
+28 -129
View File
@@ -6,144 +6,43 @@ import httpx
class S3BufferedReader(BufferedReader):
def __init__(self, workspace: str, windmill_client: httpx.Client, file_key: str, s3_resource_path: str | None):
self._workspace = workspace
self._client = windmill_client
self._file_key = file_key
self._s3_resource_path = s3_resource_path
self._file_size: int | None = None
params = {
"file_key": file_key,
}
if s3_resource_path is not None:
params["s3_resource_path"] = s3_resource_path
self._context_manager = windmill_client.stream(
"GET",
f"/w/{workspace}/job_helpers/download_s3_file",
params=params,
timeout=None,
)
self._part_number: int | None = 0
self._current_chunk: list[int] = []
self._position_in_chunk = 0
def __enter__(self):
reader = self._context_manager.__enter__()
self._iterator = reader.iter_bytes()
return self
def peek(self, size=0):
read_result = []
if size > 0 or (
len(self._current_chunk) > self._position_in_chunk
and len(self._current_chunk) > self._position_in_chunk + size
):
payload_to_return = self._current_chunk[self._position_in_chunk : (self._position_in_chunk + size)]
read_result += payload_to_return
return bytes(read_result)
if self._position_in_chunk < len(self._current_chunk):
payload_to_return = self._current_chunk[self._position_in_chunk :]
read_result += bytes(payload_to_return)
previous_chunk = self._current_chunk
previous_part_number = self._part_number
previous_position_in_chunk = self._position_in_chunk
try:
while len(read_result) < size or self._part_number is not None:
self._download_new_chunk()
if size > 0 and size - len(read_result) < len(self._current_chunk):
payload_to_return = self._current_chunk[: (size - len(read_result))]
self._position_in_chunk = size - len(read_result)
read_result += bytes(payload_to_return)
break
read_result += bytes(self._current_chunk)
if self._part_number is None:
break
finally:
# always roll back the changes to the stream state
self._current_chunk = previous_chunk
self._part_number = previous_part_number
self._position_in_chunk = previous_position_in_chunk
return read_result
raise Exception("Not implemented, use read() instead")
def read(self, size=-1):
read_result = []
if size > 0 and (
len(self._current_chunk) > self._position_in_chunk
and len(self._current_chunk) > self._position_in_chunk + size
):
payload_to_return = self._current_chunk[self._position_in_chunk : (self._position_in_chunk + size)]
self._position_in_chunk += size
read_result += payload_to_return
return bytes(read_result)
if self._position_in_chunk < len(self._current_chunk):
payload_to_return = self._current_chunk[self._position_in_chunk :]
self._position_in_chunk = len(self._current_chunk)
read_result += payload_to_return
previous_chunk = self._current_chunk
previous_part_number = self._part_number
previous_position_in_chunk = self._position_in_chunk
try:
while len(read_result) < size or self._part_number is not None:
self._download_new_chunk()
if size > 0 and size - len(read_result) < len(self._current_chunk):
payload_to_return = self._current_chunk[: (size - len(read_result))]
self._position_in_chunk = size - len(read_result)
read_result += payload_to_return
if size < 0:
for b in self._iterator:
read_result += b
else:
for i in range(size):
try:
b = self._iterator.__next__()
except StopIteration:
break
read_result += b
read_result += self._current_chunk
if self._part_number is None:
break
except Exception as e:
# roll back the changes to the stream state
self._current_chunk = previous_chunk
self._part_number = previous_part_number
self._position_in_chunk = previous_position_in_chunk
raise e
return bytes(read_result)
def read1(self, size=-1):
read_result = []
return self.read(size)
if size < 0:
payload_to_return = self._current_chunk[self._position_in_chunk :]
self._position_in_chunk = len(self._current_chunk)
read_result += payload_to_return
return bytes(read_result)
if size > 0 and len(self._current_chunk) > self._position_in_chunk:
end_byte = min(self._position_in_chunk + size, len(self._current_chunk))
payload_to_return = self._current_chunk[self._position_in_chunk : end_byte]
self._position_in_chunk = end_byte
read_result += payload_to_return
return bytes(read_result)
# no bytes in current buffer, load a new chunk
self._download_new_chunk()
end_byte = min(size, len(self._current_chunk))
payload_to_return = self._current_chunk[:end_byte]
self._position_in_chunk = end_byte
read_result += payload_to_return
return bytes(read_result)
def close(self):
self._part_number = 0
self._current_chunk = []
self._position_in_chunk = 0
def _download_new_chunk(
self,
):
try:
raw_response = self._client.post(
f"/w/{self._workspace}/job_helpers/multipart_download_s3_file",
json={
"file_key": self._file_key,
"part_number": self._part_number,
"file_size": self._file_size,
"s3_resource_path": self._s3_resource_path,
},
)
try:
raw_response.raise_for_status()
except httpx.HTTPStatusError as err:
raise Exception(f"{err.request.url}: {err.response.status_code}, {err.response.text}")
response = raw_response.json()
except JSONDecodeError as e:
raise Exception("Could not generate download S3 file part") from e
self._current_chunk = response["part_content"]
self._part_number = response["next_part_number"]
self._file_size = response["file_size"]
self._position_in_chunk = 0
def __exit__(self, *args):
self._context_manager.__exit__(*args)