Files
windmill/backend/windmill-api/src/embeddings.rs
T
HugoCasa 5dfd0c04bd feat: query embeddings from s3 (#2683)
* feat: query embeddings from s3

* fix: better error handling + logging
2023-11-23 15:03:12 +01:00

552 lines
18 KiB
Rust

use std::{collections::HashMap, path::PathBuf, sync::Arc};
use anyhow::{anyhow, Error, Result};
use axum::{
extract::{Path, Query},
routing::get,
Extension, Json, Router,
};
use candle_core::{Device, Tensor};
use candle_nn::VarBuilder;
use candle_transformers::models::bert::{BertModel, Config, DTYPE};
use hf_hub::{api::sync::Api, Cache, Repo};
use serde::{Deserialize, Serialize};
use sqlx::{Pool, Postgres};
use tinyvector::{
db::{Db, Embedding},
similarity::Distance,
};
use tokenizers::Tokenizer;
use tokio::sync::RwLock;
use windmill_common::{error::JsonResult, utils::http_get_from_hub};
use crate::{resources::ResourceType, HTTP_CLIENT};
#[derive(Deserialize)]
struct HubScriptsQuery {
text: String,
limit: Option<i64>,
kind: Option<String>,
app: Option<String>,
}
#[derive(Serialize)]
pub struct HubScriptResult {
ask_id: i64,
id: i64,
version_id: i64,
summary: String,
app: String,
kind: String,
score: f32,
}
async fn query_hub_scripts(
Query(query): Query<HubScriptsQuery>,
Extension(embeddings_db): Extension<Arc<RwLock<Option<EmbeddingsDb>>>>,
) -> JsonResult<Vec<HubScriptResult>> {
let embeddings_db = embeddings_db.read().await;
if let Some(embeddings_db) = embeddings_db.as_ref() {
let results = embeddings_db
.query_hub_scripts(&query.text, query.limit, query.kind, query.app)
.await?;
Ok(Json(results))
} else {
Err(windmill_common::error::Error::InternalErr(
"Embeddings db not initialized".to_string(),
))
}
}
#[derive(Deserialize)]
struct ResourceTypesQuery {
text: String,
limit: Option<i64>,
}
#[derive(Serialize)]
pub struct ResourceTypeResult {
name: String,
score: f32,
schema: Option<serde_json::Value>,
}
async fn query_resource_types(
Query(query): Query<ResourceTypesQuery>,
Path(w_id): Path<String>,
Extension(embeddings_db): Extension<Arc<RwLock<Option<EmbeddingsDb>>>>,
) -> JsonResult<Vec<ResourceTypeResult>> {
let embeddings_db = embeddings_db.read().await;
if let Some(embeddings_db) = embeddings_db.as_ref() {
let results = embeddings_db
.query_resource_types(w_id, &query.text, query.limit)
.await?;
Ok(Json(results))
} else {
Err(windmill_common::error::Error::InternalErr(
"Embeddings db not initialized".to_string(),
))
}
}
#[derive(Deserialize, Debug, Clone)]
struct HubScript {
ask_id: i64,
id: i64,
version_id: i64,
summary: String,
app: String,
kind: String,
embedding: Vec<f32>,
}
#[derive(Deserialize, Debug)]
struct HubResourceType {
name: String,
embedding: Vec<f32>,
}
pub struct ModelInstance {
model: BertModel,
tokenizer: Tokenizer,
}
impl ModelInstance {
pub async fn load_model_files() -> Result<(PathBuf, PathBuf, PathBuf)> {
let repo = Repo::model("thenlper/gte-small".to_string());
let cache = Cache::default().repo(repo.clone());
let api = Api::new()?;
let api = api.repo(repo);
let (config_filename, tokenizer_filename, weights_filename) = (
cache
.get("config.json")
.or_else(|| api.get("config.json").ok())
.ok_or(Error::msg("could not get config.json"))?,
cache
.get("tokenizer.json")
.or_else(|| api.get("tokenizer.json").ok())
.ok_or(Error::msg("could not get tokenizer.json"))?,
cache
.get("model.safetensors")
.and_then(|p| {
tracing::info!("Found embedding model in cache");
Some(p)
})
.or_else(|| {
tracing::info!("Downloading embedding model...");
api.get("model.safetensors").ok().and_then(|p| {
tracing::info!("Downloaded embedding model");
Some(p)
})
})
.ok_or(Error::msg("could not get model.safetensors"))?,
);
Ok((config_filename, tokenizer_filename, weights_filename))
}
pub async fn new() -> Result<Self> {
tracing::info!("Loading embedding model...");
let device = Device::Cpu;
let (config_filename, tokenizer_filename, weights_filename) =
Self::load_model_files().await?;
let config = std::fs::read_to_string(config_filename)?;
let config: Config = serde_json::from_str(&config)?;
let tokenizer = Tokenizer::from(
Tokenizer::from_file(tokenizer_filename)
.map_err(Error::msg)?
.with_padding(None)
.to_owned(),
);
let vb =
unsafe { VarBuilder::from_mmaped_safetensors(&[weights_filename], DTYPE, &device)? };
let model = BertModel::load(vb, &config)?;
tracing::info!("Loaded embedding model");
Ok(Self { model, tokenizer })
}
pub async fn create_embedding(self: Arc<Self>, sentence: &str) -> Result<Vec<f32>> {
let sentence = sentence.to_owned();
tokio::task::spawn_blocking(move || {
let tokens = self
.tokenizer
.encode(sentence, true)
.map_err(Error::msg)?
.get_ids()
.to_vec();
let token_ids = Tensor::new(&tokens[..], &Device::Cpu)?.unsqueeze(0)?;
let token_type_ids = token_ids.zeros_like()?;
let embedding = self.model.forward(&token_ids, &token_type_ids)?;
let embedding = (embedding.sum(1)? / embedding.dim(1)? as f64)?;
let embedding = normalize_l2(&embedding)?;
let embedding = embedding.get(0)?.to_vec1()?;
Ok(embedding)
})
.await?
}
}
pub struct EmbeddingsDb {
db: Db,
model_instance: Arc<ModelInstance>,
}
impl EmbeddingsDb {
pub async fn new(pg_db: &Pool<Postgres>, model_instance: Arc<ModelInstance>) -> Result<Self> {
let db = Db::new();
let mut embeddings_db = Self { db, model_instance: model_instance.clone() };
embeddings_db.fill_db(pg_db).await?;
Ok(embeddings_db)
}
async fn fill_db(&mut self, pg_db: &Pool<Postgres>) -> Result<()> {
if self.db.get_collection("scripts").is_some() {
self.db.delete_collection("scripts")?;
}
self.db
.create_collection("scripts".to_string(), 384, Distance::Cosine)?;
if self.db.get_collection("resource_types").is_some() {
self.db.delete_collection("resource_types")?;
}
self.db
.create_collection("resource_types".to_string(), 384, Distance::Cosine)?;
let response = HTTP_CLIENT
.get("https://bucket.windmillhub.com/embeddings/scripts_embeddings.json")
.send()
.await;
let response =
if response.is_err() || response.as_ref().unwrap().error_for_status_ref().is_err() {
tracing::warn!("Failed to get scripts embeddings from bucket, trying hub...");
http_get_from_hub(
&HTTP_CLIENT,
"https://hub.windmill.dev/scripts/embeddings",
false,
None,
pg_db,
)
.await?
} else {
response.unwrap()
};
if response.error_for_status_ref().is_err() {
return Err(anyhow!(
"Failed to get scripts embeddings from hub with error code: {}",
response.status()
));
}
let hub_scripts = response.json::<Vec<HubScript>>().await?;
for script in &hub_scripts {
let mut hm = HashMap::new();
hm.insert("ask_id".to_string(), script.ask_id.clone().to_string());
hm.insert("summary".to_string(), script.summary.clone());
hm.insert("app".to_string(), script.app.clone());
hm.insert("kind".to_string(), script.kind.clone());
hm.insert("id".to_string(), script.id.clone().to_string());
hm.insert(
"version_id".to_string(),
script.version_id.clone().to_string(),
);
let embedding = Embedding {
id: script.ask_id.clone().to_string(),
vector: script.embedding.clone(),
metadata: Some(hm),
};
self.db.insert_into_collection("scripts", embedding)?;
}
let response = HTTP_CLIENT
.get("https://bucket.windmillhub.com/embeddings/resource_types_embeddings.json")
.send()
.await;
let response = if response.is_err()
|| response.as_ref().unwrap().error_for_status_ref().is_err()
{
tracing::warn!("Failed to get resource types embeddings from bucket, trying hub...");
http_get_from_hub(
&HTTP_CLIENT,
"https://hub.windmill.dev/resource_types/embeddings",
false,
None,
pg_db,
)
.await?
} else {
response.unwrap()
};
if response.error_for_status_ref().is_err() {
return Err(anyhow!(
"Failed to get resource types embeddings from hub with error code: {}",
response.status()
));
}
let hub_resource_types = response.json::<Vec<HubResourceType>>().await?;
let resource_types: Vec<ResourceType> =
sqlx::query_as!(ResourceType, "SELECT * from resource_type ORDER BY name",)
.fetch_all(pg_db)
.await?;
for rt in resource_types {
let mut hm = HashMap::new();
hm.insert("name".to_string(), rt.name.clone());
if let Some(schema) = rt.schema.clone() {
hm.insert("schema".to_string(), serde_json::to_string(&schema)?);
}
hm.insert("workspace".to_string(), rt.workspace_id.clone());
let hub_rt = hub_resource_types.iter().find(|hrt| hrt.name == rt.name);
let vector = if let Some(hub_rt) = hub_rt {
hub_rt.embedding.clone()
} else {
self.model_instance
.clone()
.create_embedding(&format!(
"{};{}",
rt.name,
rt.description.unwrap_or_default()
))
.await?
};
let embedding = Embedding {
id: format!("{}_{}", rt.workspace_id, rt.name),
vector,
metadata: Some(hm),
};
self.db
.insert_into_collection("resource_types", embedding)?;
}
Ok(())
}
pub async fn query_hub_scripts(
&self,
query: &str,
limit: Option<i64>,
kind: Option<String>,
app: Option<String>,
) -> Result<Vec<HubScriptResult>> {
let model_instance = self.model_instance.clone();
let query_embedding = model_instance.create_embedding(query).await?;
let collection = self.db.get_collection("scripts");
let collection = collection.ok_or(Error::msg("no collection found"))?;
let filter = |embedding: &Embedding| {
if let Some(metadata) = embedding.metadata.as_ref() {
match (
metadata.get("kind"),
kind.clone(),
metadata.get("app"),
app.clone(),
) {
(Some(script_kind), Some(kind), Some(script_app), Some(app)) => {
&kind == script_kind && &app == script_app
}
(Some(script_kind), Some(kind), _, _) => &kind == script_kind,
(_, _, Some(script_app), Some(app)) => &app == script_app,
(_, None, _, None) => true,
_ => false,
}
} else {
false
}
};
let results = collection.get_similarity(
&query_embedding,
limit.unwrap_or(10) as usize,
Some(&filter),
Some(0.75),
);
let results: Result<Vec<_>> = results
.iter()
.map(|r| {
let metadata = r
.embedding
.metadata
.as_ref()
.ok_or(Error::msg("no metadata"))?;
Ok(HubScriptResult {
ask_id: metadata
.get("ask_id")
.ok_or(Error::msg("no ask_id"))?
.parse::<i64>()?,
summary: metadata
.get("summary")
.ok_or(Error::msg("no summary"))?
.to_owned(),
app: metadata.get("app").ok_or(Error::msg("no app"))?.to_owned(),
kind: metadata
.get("kind")
.ok_or(Error::msg("no kind"))?
.to_owned(),
id: metadata
.get("id")
.ok_or(Error::msg("no id"))?
.parse::<i64>()?,
version_id: metadata
.get("version_id")
.ok_or(Error::msg("no version_id"))?
.parse::<i64>()?,
score: r.score,
})
})
.collect();
results
}
pub async fn query_resource_types(
&self,
workspace: String,
query: &str,
limit: Option<i64>,
) -> Result<Vec<ResourceTypeResult>> {
let model_instance = self.model_instance.clone();
let query_embedding = model_instance.create_embedding(query).await?;
let collection = self.db.get_collection("resource_types");
if collection.is_none() {
return Ok(vec![]);
}
let collection = collection.ok_or(Error::msg("no collection found"))?;
let filter = |embedding: &Embedding| {
if let Some(metadata) = embedding.metadata.as_ref() {
match metadata.get("workspace").map(|x| x.as_str()) {
Some("admins") => true,
Some(rt_workspace) => &workspace == rt_workspace,
_ => false,
}
} else {
false
}
};
let results = collection.get_similarity(
&query_embedding,
limit.unwrap_or(10) as usize,
Some(&filter),
Some(0.75),
);
let results: Result<_> = results
.iter()
.map(|r| {
let metadata = r
.embedding
.metadata
.as_ref()
.ok_or(Error::msg("no metadata"))?;
Ok(ResourceTypeResult {
name: metadata
.get("name")
.ok_or(Error::msg("no name"))?
.to_owned(),
schema: match metadata.get("schema") {
Some(schema) => serde_json::from_str(schema)?,
None => None,
},
score: r.score,
})
})
.collect();
results
}
}
fn normalize_l2(v: &Tensor) -> Result<Tensor> {
Ok(v.broadcast_div(&v.sqr()?.sum_keepdim(1)?.sqrt()?)?)
}
pub fn load_embeddings_db(db: &Pool<Postgres>) -> Arc<RwLock<Option<EmbeddingsDb>>> {
let embeddings_db: Arc<RwLock<Option<EmbeddingsDb>>> = Arc::new(RwLock::new(None));
let disable_embedding = std::env::var("DISABLE_EMBEDDING")
.ok()
.map(|x| x.parse::<bool>().unwrap_or(false))
.unwrap_or(false);
if !disable_embedding {
let db_clone = db.clone();
let embeddings_clone: Arc<RwLock<Option<EmbeddingsDb>>> = embeddings_db.clone();
tokio::spawn(async move {
let model_instance = ModelInstance::new().await;
if let Ok(model_instance) = model_instance {
let model_instance = Arc::new(model_instance);
loop {
tracing::info!("Creating embeddings DB...");
let new_embeddings_db =
EmbeddingsDb::new(&db_clone, model_instance.clone()).await;
if let Err(e) = new_embeddings_db.as_ref() {
tracing::error!("Failed to create embeddings db: {}", e);
} else {
let mut embeddings_db = embeddings_clone.write().await;
*embeddings_db = new_embeddings_db.ok();
tracing::info!("Created embeddings DB");
}
tokio::time::sleep(std::time::Duration::from_secs(3600 * 24)).await;
}
} else {
tracing::error!(
"Failed to initialize model instance: {}",
model_instance.err().unwrap()
);
}
});
}
embeddings_db
}
pub fn workspaced_service(embeddings_db: Option<Arc<RwLock<Option<EmbeddingsDb>>>>) -> Router {
if let Some(embeddings_db) = embeddings_db {
Router::new()
.route("/query_resource_types", get(query_resource_types))
.layer(Extension(embeddings_db))
} else {
Router::new()
}
}
pub fn global_service(embeddings_db: Option<Arc<RwLock<Option<EmbeddingsDb>>>>) -> Router {
if let Some(embeddings_db) = embeddings_db {
Router::new()
.route("/query_hub_scripts", get(query_hub_scripts))
.layer(Extension(embeddings_db))
} else {
Router::new()
}
}