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* feat(cli): hash codebase extra_digest_paths and warn on uncovered bundle inputs Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> * fix(cli): cache codebase digest only once complete, skip entry in warning Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> * fix(cli): accept string extra_digest_paths, always print uncovered-input warning Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> * fix(cli): clarify extra_digest_paths resolution and missing-path error Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>