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Any Read() deny rule makes Claude Code resolve the file operands of every Bash command that reads files. A path it cannot resolve, such as one that follows a cd into a directory the analyzer does not track, escalates to a permission prompt even under bypassPermissions. A plain recursive grep in the repo root escalates too, because it could reach .env. Drop the read rules and widen the write rules to cover the same files, so secrets still cannot be written through Edit, Write, or a shell redirect. Reads of those files are no longer blocked. Claude-Session: https://claude.ai/code/session_01RNCupPk2yewQT1JMNjkV8M Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>