* chore: upgrade to Arrow 29.0 and use workspace package and dependencies
* fix: resolve PR comments
Co-authored-by: luofucong <luofucong@greptime.com>
This patch changes output for our http SQL API and prepare it for our SQL editor development. Changes includes:
- includes aide for OAS 3.1 openapi documents, available at /v1/private/api.json
- simplified some of http handlers return type, use string or json directly
- created new HttpRecordsOutput type to hide internals of RecordBatch from end-user. It also tuned data structure to be friendly for application to consume
- updated response struct to use code for success or detailed error code
Residual issue #366
* feat: allow http post for our sql http api
* feat: update our http api and attempt to add openapi spec support
* test: correct test against new handler apis
* refactor: rename rows to records
* refactor: removed HttpResponse completely
* feat: add information to our openapi docs
* feat: add docs for sql interface response
* refactor: use struct to represent query so we can doc it via aide
* refactor: use arc wrapped api
* feat: add redoc UI support
* Update src/servers/src/http.rs
Co-authored-by: LFC <bayinamine@gmail.com>
* Update src/servers/src/http.rs
Co-authored-by: LFC <bayinamine@gmail.com>
* fix: address review comments
* test: update integration tests for new api output
* refactor: make prometheus http apis compatible with recent changes
* refactor: get schema from stream
* test: add test for recordbatch to json serialization
* test: add todo for a test to be fixed later
* Revert "test: add todo for a test to be fixed later"
This reverts commit a5a50c7afb.
* fix: Revert "refactor: get schema from stream"
This reverts commit 945b685556.
* chore: add todo for pending issue #366
* chore: remove fixed server url in openapi docs
* feat: include error_code in json response
* refactor: use code over success field in json response
Co-authored-by: LFC <bayinamine@gmail.com>
* refactor: return PhysicalPlan in Table trait's scan method, to support partitioned execution in Frontend's distribute read
* refactor: pub use necessary DataFusion types
* refactor: replace old "PhysicalPlan" and its adapters
Co-authored-by: luofucong <luofucong@greptime.com>
Co-authored-by: Yingwen <realevenyag@gmail.com>
* feat: initial commit of postgres protocol adapter
* initial commit of postgres server
* feat: use common_io runtime and correct testcase
* fix previous tests
* feat: adopt pgwire api changes and add support for text encoded data
* feat: initial integration with datanode
* test: add feature flag to test
* fix: resolve lint warnings
* feat: add postgres feature flags for datanode
* feat: add support for newly introduced timestamp type
* feat: adopt latest datanode changes
* fix: address clippy warning for flattern scenario
* fix: make clippy great again
* fix: address issues found in review
* chore: sort dependencies by name
* feat: adopt new Output api
* fix: return error on unsupported data types
* refactor: extract common code dealing with record batches
* fix: resolve clippy warnings
* test: adds some unit tests postgres handler
* test: correct test for cargo update
* fix: update query module name
* test: add assertion for error content
* feat: frontend instance
* no need to carry column length in `Column` proto
* add more tests
* rebase develop
* create a new variant with already provisioned RecordBatches in Output
* resolve code review comments
* new frontend instance does not connect datanode grpc
* add more tests
* add more tests
* rebase develop
Co-authored-by: luofucong <luofucong@greptime.com>
* feat: improve try_into_vector function
* Impl python mod and PyVector to execute script
* add AsSeq(BUT not IMPL)
* add&test pythonic_index, add into_py_obj(UNTEST)
* add into_datatypes_value(UNTEST)
* inplace setitem_by_index unsupport
* still struggle with testing AsSeq
* actually pyimpl AsSeq&AsMap
* add slice for PyVector
* improve visualibility for testing
* adjust for clippy
* add assert for test_execute_script
* add type anno in test
* feat: basic support for PyVector's operator with scalar (#64)
* feat: memory size of vector (#53)
* feat: improve try_into_vector function
* feat: impl memory_size function for vectors
* fix: forgot memory_size assertion in null vector test
* feat: use LargeUtf8 instead of utf8 for string, and rename LargeBianryArray to BinaryArray
* feat: memory_size only calculates heap size
* feat: impl bytes_allocated for memtable (#55)
* add init and constr
* rename type cast and add test
* fix bug in pyobj_to_val
* add default cast when no type specifed
* add basic add/sub/mul for array and scalar(value)
* cargo clippy
* comment out some println
* stricter clippy
* style: cargo fmt
* fix: string&bool support in val2pyobj & back
* style: remove println in test
* style: rm println in test mod in python.rs
* refactor: use wrap_index instead of pythonic_index
* refactor: right op in scalar_arith_op
* fix: stronger type& better test
* style: remove println
* fix: scalar sign/unsigned cast
* feat: improve try_into_vector function
* Impl python mod and PyVector to execute script
* add AsSeq(BUT not IMPL)
* add&test pythonic_index, add into_py_obj(UNTEST)
* add into_datatypes_value(UNTEST)
* inplace setitem_by_index unsupport
* still struggle with testing AsSeq
* actually pyimpl AsSeq&AsMap
* add slice for PyVector
* improve visualibility for testing
* adjust for clippy
* add assert for test_execute_script
* add type anno in test
* add init and constr
* rename type cast and add test
* fix bug in pyobj_to_val
* add default cast when no type specifed
* add basic add/sub/mul for array and scalar(value)
* cargo clippy
* comment out some println
* stricter clippy
* style: cargo fmt
* fix: string&bool support in val2pyobj & back
* style: remove println in test
* style: rm println in test mod in python.rs
* refactor: use wrap_index instead of pythonic_index
* refactor: right op in scalar_arith_op
* fix: stronger type& better test
* style: remove println
* fix: scalar sign/unsigned cast
* style: remove instead of comment out
* style: remove more comment out
* feat: support scalar div vector
* style: cargo fmt
* style: typo
* refactor: rename to correct var name
* refactor: directly use arrow2::array
* refactor: mv rsub&rdiv's op into a function
* test: add python expr test
* test: add test for PyList
* refactor: tweak order of arithmetics in rtruediv
* style: remove some `use`
* refactor: move `is_instance` to mod
* refactor: move fn to mod& move `use` to head
* style: cargo fmt
* fix: correct signed/unsigned cast
* refactor: wrap err msg in another fn
* style: cargo fmt
* style: remove ok_or_else for readability
* feat: add coprocessor fn(not yet impl)
* refactor: change back to wrapped_at
* fix: update Cargo.lock
* fix: update rustc version
* Update Rust Toolchain to nightly-2022-07-14
* feat: derive Eq when possible
* style: use `from` to avoid `needless_borrow` lint
Co-authored-by: dennis zhuang <killme2008@gmail.com>
* feat: python coprocessor with type annotation (#96)
* feat: add coprocessor fn
Signed-off-by: discord9 <zglzy29yzdk@gmail.com>
* feat: cast args into PyVector
* feat: uncomplete coprocessor
* feat: erase decorator in python ast
* feat: strip decorator in ast
* fix: change parse to `Interactive`
* style: format Cargo.toml
* feat: make coprocessor actually work
* feat: move coprocessor fn out of test mod
* feat: add error handling
* style: add some comment
* feat: rm type annotation
* feat: add type annotation support
* style: move compile method to vm closure
* feat: annotation for nullable
* feat: type coercion cast in annotation
* feat: actually cast(NOT TESTED)
* fix: allow single into(type)
* refactor: extract parse_type from parser
* style: cargo fmt
* feat: change to Expr to preserve location info
* feat: add CoprParse to deal parse check error
* style: add type anno doc for coprocessor
* test: add some test
* feat: add underscore as any type in annotation
* test: add parse& runtime testcases
* style: rm dbg! remnant
* style: cargo fmt
* feat: add more error prompt info
* style: cargo fmt
* style: add doc tests' missing `use`
* fix: doc test for coprocessor
* style: cargo fmt
* fix: add missing `use` for `cargo test --doc`
* refactor: according to reviews
* refactor: more tweaks according to reviews
* refactor: merge match arm
* refactor: move into different files(UNCOMPLELTE)
* refactor: split parse_copr into more function
* refactor: split `exec_coprocessor` to more fn
* style: cargo fmt
* feat: print Py Exceptions in String
* feat: error handling conform standards
* test: fix test_coprocessor
* feat: remove `into` in python
* test: remove all `into` in python test
* style: update comment
* refactor: move strip compile fn to impl Copr
* refactor: move `gen_schema` to impl copr
* refactor: move `check_cast_type` to impl copr
* refactor: if let to match
* style: cargo fmt
* refactor: better parse of keyword arg list
* style: cargo fmt
* refactor: some error handling(UNCOMPLETE)
* refactor: error handling to general Error type
* refactor: rm some Vec::new()
* test: modify all tests to ok
* style: reorder item
* refactor: fetch using iter
* style: cargo fmt
* style: fmt macro by hand
* refactor: rename InnerError to Error
* test: use ron to write test
* test: add test for exec_copr
* refactor: add parse_bin_op
* feat: add check_anno
* refactor: add some checker function
* refactor: exec_copr into smaller func
* style: add some comment
* refactor: add check for bin_op
* refactor: rm useless Result
* style: add pretty print for error with location
* feat: more info for pretty print
* refactor: mv pretty print to error.rs
* refactor: rm execute_script
* feat: add pretty print
* feat: add constant column support
* test: add test for constant column
* feat: add pretty print exec fn
* style: cargo fmt
* feat: add macro to chain call `.fail()`
* style: update doc for constant columns
* style: add lint to allow print in test fn
* style: cargo fmt
* docs: update some comment
* fix: ignore doctest for now
* refactor: check_bin_op
* refactor: parse_in_op, check ret anno fn
* refactor: rm check_decorator
* doc: loc add newline explain
* style: cargo fmt
* refactor: use Helper::try_into_vec in try_into_vec
* style: cargo fmt
* test: add ret anno test
* style: cargo fmt
* test: add name for .ron tests for better debug
* test: print emoji in test
* style: rm some comment out line
* style: rename `into` to `try_into` fn
* style: cargo fmt
* refactor: rm unuse serialize derive
* fix: pretty print out of bound fix
* fix: rm some space in pretty print
* style: cargo fmt
* test: not even a python fn def
* style: cargo fmt
* fix: pretty print off by one space
* fix: allow `eprint` in clippy lint
* fix: compile error after rebase develop
* feat: port 35 functions from DataFusion to Python Coprocessor (#137)
* refactor: `cargo clippy`
* feat: create a module
* style: cargo fmt
* feat: bind `pow()` function(UNTEST)
* test: add test for udf mod
* style: allow part eq not eq for gen code
* style: allow print in test lint
* feat: use PyObjectRef to handle more types
* feat: add cargo feature for udf modules
* style: rename feature to udf-builtins
* refactor: move away from mod.rs
* feat: add all_to_f64 cast fn
* feat: add bind_math_fn macro
* feat: add all simple math UDF
* feat: add `random(len)` math fn
* feat: port `avg()` from datafusion
* refactor: add `eval_aggr_fn`
* feat: add bind_aggr_fn macro
* doc: add comment for args of macro
* feat: add all UDAF from datafusion
* refactor: extract test to separate file
* style: cargo fmt
* test: add incomplete test
* test: add .ron test fn
* feat: support scalar::list
* doc: add comments
* style: rename VagueFloat/Int to LenFloat/IntVec
* test: for all fn(expect approx_median)
* test: better print
* doc: add comment for FloatWithError
* refactor: move test.rs out of builtins/
* style: cargo fmt
* doc: add comment for .ron file
* doc: update some comments
* test: EPS=1e-12 for float eq
* test: use f64::EPSILON instead
* test: change to 2*EPS
* test: cache interpreter for fast testing
* doc: remove a TODO which is done
* test: refacto to_py_obj fn
* fix: pow fn
* doc: add a TODO for type_.rs
* test: use new_int/float in test serde
* test: for str case
* style: cargo fmt
* feat: cast PyList to ScalarValue::List
* test: cast scalar to py obj and back
* feat: cast to PyList
* test: cast from PyList
* test: nested PyVector unsupported
* doc: remove unrunable doctest
* test: replace PartialEq with impl just_as_expect
* doc: add name for discord9's TODO
* refactor: cahnge to vm.ctx.new_** instead
* doc: complete a TODO
* refactor: is_instance and other minor problem
* refactor: remove type_::is_instance
* style: cargo fmt
* feat: rename to `greptime_builtin`
* fix: error handling for PyList datatype
* style: fix clippy warning
* test: for PyList
* feat: Python Coprocessor MVP (#180)
* feat: add get_arrow_op
* feat: add comparsion op(UNTESTED)
* doc: explain why no rich compare
* refactor: py_str2str&parse_keywords
* feat: add DecoratorArgs
* refactor: parse_keywords ret Deco Args
* style: remove unused
* doc: add todo
* style: remove some unused fn
* doc: add comment for copr's field
* feat: add copr_engine module
* refactor: move to `script` crate
* style: clean up cargo.toml
* feat: add query engine for copr engine
* refactor: deco args into separate struct
* test: update corrsponding test
* feat: async coprocessor engine
* refactor: add `exec_parsed` fn
* feat: sync version of coprocessor(UNTEST)
* refactor: remove useless lifetime
* feat: new type for async stream record batch
* merge: from PR#137 add py builtins
* toolchain: update rustc to nightly-08-16
* feat: add `exec_with_cached_vm` fn(Can't compile)
* toolchain: revert to 07-14
* fix: `exec_with_cached_vm`
* fix: allow vector[_] in params
* style: cargo fmt
* doc: update comment on `_`&`_|None`
* fix: allow import&ignore type anno is ok
* feat: allow ignore return types
* refsctor: remove unused py files in functions/
* style: fmt&clippy
* refactor: python modules (#186)
* refactor: move common/script to script
* fix: clippy warnings and refactor python modules
* refactor: remove modules mod rename tests mod
* feat: adds Script and ScriptEngine trait, then impl PyScript/PyScriptEngine
* refactor: remove pub use some functions in script
* refactor: python error mod
* refactor: coprocessor and vector
* feat: adds engine test and greptime.vector function to create vector from iterable
* fix: adds a blank line to cargo file end
* fix: compile error after rebase develop
* feat: script endpoint for http server (#206)
* feat: impl /scripts API for http server
* feat: adds http api version
* test: add test for scripts handler and endpoint
* feat: python side mock module and more builtin functions (#209)
* feat: add python side module(for both mock and real upload script)
* style: add *.pyc to gitignore
* feat: move copr decorator(in .py) to greptime.py
* doc: update comment for `datetime`&`mock_tester`&gitignore
* feat: `filter()` a array with bool array(UNTESTED)
* feat: `prev()`ious elem in array ret as new array(UNTEST)
* feat: `datetime()` parse date time string and ret integer(UNTEST)
* fix: add missing return&fmt
* fix: allow f32 cast to PyFloat
* fix: `datetime()`'s last token now parsed
* test: `calc_rvs` now can run with builtin module
* feat: allow rich compare which ret bool array
* feat: logic and(`&`) for bool array
* style: cargo fmt
* feat: index PyVector by bool array
* feat: alias `ln` as `log` in builtin modules
* feat: logic or(`|`)¬( `~`) for bool array
* feat: add `post` for @copr in py side mod
* feat: change datetime return to i64
* feat: py side mod `post` script to given address
* fix: add `engine` field in `post` in py side mod
* refactor: use `ConstantVector` in `pow()` builtin
* fix: prev ret err for zero array
* doc: rm comment out code
* test: incomplete pyside mod test case
* git: ignore all __pycache__
* style: fmt&clippy
* refactor: split py side module into exmaple&gptime
* feat: init_table in py using `v1/sql` api
* feat: calc_rvs now run both locally and remote
* doc: add doc for how to run it
* fix: comment out start server code in test
* fix: clippy warnings
* fix: http test url
* fix: some CR problems
* fix: some CR problems
* refactor: script executor for instance
* refactor: remove engine param in execute_script
* chore: Remove unnecessary allow attributes
Co-authored-by: Dennis Zhuang <killme2008@gmail.com>
Co-authored-by: Discord9 <discord9@163.com>
Co-authored-by: discord9 <zglzy29yzdk@gmail.com>
Co-authored-by: discord9 <55937128+discord9@users.noreply.github.com>
* feat: add `BorrowedValue` and DF Array access by index
This `BorrowedValue` can hold from datafusion arrow without copy.
`arrow_array_access` provides an index access to Arrow array and it holds the
result with our `BorrowedValue`. So we don't have to copy string/binary when
converting to `Value`.
* refactor: use borrowed types and iterator for recordbatch access
* fix: return Null with early check
* fix: i64 type error addressed by unit test
* refactor: give arrow_array_access a better name
* refactor: removed borrowed value and use value for now
* refactor: make iterator to return result of vec
* refactor: lift recordbatch iterator into common module
* fix: address clippy warnings
* feat: impl scanning data from storage for MitoTable
* adds test mod to setup table engine test
* fix: comment error
* fix: boyan -> dennis in todo comments
* fix: remove necessary send in BatchIteratorPtr
* feat: Maintain last sequence in VersionControl
* refactor(recordbatch): Replace `Arc<Schema>` by SchemaRef
* feat: Memtable support filter rows with invisible sequence
* feat: snapshot wip
* feat: Implement scan for SnapshotImpl
* test: Add a test that simply puts and scans a region
* chore: Fix clippy
* fix(memtable): Fix memtable returning duplicate keys
* test(memtable): Add sequence visibility test
* test: Add ValueType test
* chore: Address cr comments
* fix: Fix value is not storing but adding to committed sequence
* chore(store-api): Fix typo in region comments
* feat(storage): Init storage crate
* feat(store-api): Make some method async
* feat(storage): Blank StorageEngine implementation
* feat(storage): StorageEngine returns owned SchemaRef
* feat: pub use arrow in datatypes
* feat(store-api): Implement RegionMetadata
* feat(storage): Impl create region in memory.
* chore(object-store): Format cargo toml
* chore(storage): Log on region created
* feat: Impl CowCell
* feat: Store id to cf meta mapping
* refactor: Refactor version and rename it to VersionControl
* feat: Impl write batch for put, refactor column family
* feat(storage): Skeleton of writing to memtable
* refactor(storage): MemTable returns MemTableSchema
* feat: Add ColumnSchema and conversion between schema and arrow's schema
* feat: Validate put data
* feat: Valid schema of write batch
* feat: insert memtable WIP
* feat: Impl Inserter for memtable
* feat(datatypes): Implement Eq/Ord for Value
feat: Implement Ord/Eq for Bytes/StringBytes and Deref for Bytes
test: Test Value::from()
* feat: Define BTreeMemTable
* Fix: Rename get/get_unchecked to try_get/get and fix get not consider null.
* feat: Impl BTreeMemTable::write()
* refactor: Remove useless ColumnFamilyHandle now
* chore: Clean comment
* feat(common): Add from `String/&str/Vec<u8>/&[u8]` for Value
* test(storage): Add tests for WriteBatch
* chore: Fix clippy
* feat: Add builder for RowKey/ColumnFamilyDescriptor
* test: Add test for metadata
* chore: Fix clippy
* test: Add test for region and engine
* chore: Fix clippy
* chore: Address CR comment
* feat: adds scalars mod and enhance vectors
* temp commit
* fix compile error
* Impl pow function with new udf framework
* Adds common-function crate and impl scalars function
* fix: remove used code
* test: adds test for function crate and refactor vectors
* fix: fmt style
* feat: impl numpy.clip function
* feat: improve clip function returning int64 type when arguments do not have float type
* feat: adds more test for vectors
* feat: adds replicate method test for primitive vector
* fix: by code review
* feat: clip function returns uint64 when all arguments type are unsigned
* refactor: improve vectors#only_null
* fix: clippy warning
* fix: clippy warning
* fix: clip should return float64 when arguments have both signed and unsigned types
