Commit Graph

90 Commits

Author SHA1 Message Date
Chang She
e929491187 chore(python): handle NaN input in fts ingestion (#763)
If the input text is None, Tantivy raises an error
complaining it cannot add a NoneType. We handle this
upstream so None's are not added to the document.
If all of the indexed fields are None then we skip
this document.
2024-04-05 16:24:47 -07:00
Chang She
c97ae6b787 chore(python): update embedding API to use openai 1.6.1 (#751)
API has changed significantly, namely `openai.Embedding.create` no
longer exists.
https://github.com/openai/openai-python/discussions/742

Update the OpenAI embedding function and put a minimum on the openai sdk
version.
2024-04-05 16:24:47 -07:00
Chang She
7bac1131fb feat: add timezone handling for datetime in pydantic (#578)
If you add timezone information in the Field annotation for a datetime
then that will now be passed to the pyarrow data type.

I'm not sure how pyarrow enforces timezones, right now, it silently
coerces to the timezone given in the column regardless of whether the
input had the matching timezone or not. This is probably not the right
behavior. Though we could just make it so the user has to make the
pydantic model do the validation instead of doing that at the pyarrow
conversion layer.
2024-04-05 16:24:47 -07:00
Chang She
a0afa84786 feat(python): add post filtering for full text search (#739)
Closes #721 

fts will return results as a pyarrow table. Pyarrow tables has a
`filter` method but it does not take sql filter strings (only pyarrow
compute expressions). Instead, we do one of two things to support
`tbl.search("keywords").where("foo=5").limit(10).to_arrow()`:

Default path: If duckdb is available then use duckdb to execute the sql
filter string on the pyarrow table.
Backup path: Otherwise, write the pyarrow table to a lance dataset and
then do `to_table(filter=<filter>)`

Neither is ideal. 
Default path has two issues:
1. requires installing an extra library (duckdb)
2. duckdb mangles some fields (like fixed size list => list)

Backup path incurs a latency penalty (~20ms on ssd) to write the
resultset to disk.

In the short term, once #676 is addressed, we can write the dataset to
"memory://" instead of disk, this makes the post filter evaluate much
quicker (ETA next week).

In the longer term, we'd like to be able to evaluate the filter string
on the pyarrow Table directly, one possibility being that we use
Substrait to generate pyarrow compute expressions from sql string. Or if
there's enough progress on pyarrow, it could support Substrait
expressions directly (no ETA)

---------

Co-authored-by: Will Jones <willjones127@gmail.com>
2024-04-05 16:24:47 -07:00
Chang She
46bf5a1ed1 feat(python): support list of list fields from pydantic schema (#747)
For object detection, each row may correspond to an image and each image
can have multiple bounding boxes of x-y coordinates. This means that a
`bbox` field is potentially "list of list of float". This adds support
in our pydantic-pyarrow conversion for nested lists.
2024-04-05 16:24:47 -07:00
Weston Pace
94e81ff84b feat: add the ability to create scalar indices (#679)
This is a pretty direct binding to the underlying lance capability
2024-04-05 16:24:47 -07:00
Chang She
009297e900 bug(python): fix path handling in windows (#724)
Use pathlib for local paths so that pathlib
can handle the correct separator on windows.

Closes #703

---------

Co-authored-by: Will Jones <willjones127@gmail.com>
2024-04-05 16:24:45 -07:00
Will Jones
a975cc0a94 fix: prevent duplicate data in FTS index (#728)
This forces the user to replace the whole FTS directory when re-creating
the index, prevent duplicate data from being created. Previously, the
whole dataset was re-added to the existing index, duplicating existing
rows in the index.

This (in combination with lancedb/lance#1707) caused #726, since the
duplicate data emitted duplicate indices for `take()` and an upstream
issue caused those queries to fail.

This solution isn't ideal, since it makes the FTS index temporarily
unavailable while the index is built. In the future, we should have
multiple FTS index directories, which would allow atomic commits of new
indexes (as well as multiple indexes for different columns).

Fixes #498.
Fixes #726.

---------

Co-authored-by: Chang She <759245+changhiskhan@users.noreply.github.com>
2024-04-05 16:24:30 -07:00
Will Jones
48a12e780c upgrade lance to v0.9.1 (#727)
This brings in some important bugfixes related to take and aarch64
Linux. See changes at:
https://github.com/lancedb/lance/releases/tag/v0.9.1
2024-04-05 16:24:30 -07:00
Chang She
b60a2177ae feat(python): support nested reference for fts (#723)
https://github.com/lancedb/lance/issues/1739

Support nested field reference in full text search

---------

Co-authored-by: Will Jones <willjones127@gmail.com>
2024-04-05 16:24:30 -07:00
Chang She
cc9d74e7a7 feat(python): add option to flatten output in to_pandas (#722)
Closes https://github.com/lancedb/lance/issues/1738

We add a `flatten` parameter to the signature of `to_pandas`. By default
this is None and does nothing.
If set to True or -1, then LanceDB will flatten structs before
converting to a pandas dataframe. All nested structs are also flattened.
If set to any positive integer, then LanceDB will flatten structs up to
the specified level of nesting.

---------

Co-authored-by: Weston Pace <weston.pace@gmail.com>
2024-04-05 16:24:30 -07:00
Chang She
374a6f7e78 feat: support nested pydantic schema (#707) 2024-04-05 16:24:30 -07:00
Will Jones
9356c3b86a feat(python): add update query support for Python (#654)
Closes #69

Will not pass until https://github.com/lancedb/lance/pull/1585 is
released
2024-04-05 16:24:29 -07:00
Bert
bbf34ae7f4 fix: python remote correct open_table error message (#659) 2024-04-05 16:23:49 -07:00
Rok Mihevc
78ab9068a8 feat(python): expose index cache size (#655)
This is to enable https://github.com/lancedb/lancedb/issues/641.
Should be merged after https://github.com/lancedb/lance/pull/1587 is
released.
2024-04-05 16:23:49 -07:00
Ayush Chaurasia
c0a49a9a5b Multi-task instructor model with quantization support & weak_lru cache for embedding function models (#612)
resolves #608
2024-04-05 16:23:49 -07:00
Lei Xu
86efd36689 chore: improve create_table API consistency between local and remote SDK (#627) 2024-04-05 16:23:47 -07:00
Ayush Chaurasia
159ecbac5a Exponential standoff retry support for handling rate limited embedding functions (#614)
Users ingesting data using rate limited apis don't need to manually make
the process sleep for counter rate limits
resolves #579
2024-04-05 16:23:14 -07:00
Bert
cd7a4dd251 fix!: sort table names (#619)
https://github.com/lancedb/lance/issues/1385
2024-04-05 16:22:59 -07:00
Weston Pace
301e08f30e feat: allow prefiltering with index (#610)
Support for prefiltering with an index was added in lance version 0.8.7.
We can remove the lancedb check that prevents this. Closes #261
2024-04-05 16:22:59 -07:00
Chang She
2861f33982 fix(python): fix multiple embedding functions bug (#597)
Closes #594

The embedding functions are pydantic models so multiple instances with
the same parameters are considered ==, which means that if you have
multiple embedding columns it's possible for the embeddings to get
overwritten. Instead we use `is` instead of == to avoid this problem.

testing: modified unit test to include this case
2024-04-05 16:22:59 -07:00
Ayush Chaurasia
507f6087c2 [Python]Embeddings API refactor (#580)
Sets things up for this -> https://github.com/lancedb/lancedb/issues/579
- Just separates out the registry/ingestion code from the function
implementation code
- adds a `get_registry` util
- package name "open-clip" -> "open-clip-torch"
2024-04-05 16:22:59 -07:00
Prashanth Rao
d38e3d496f Add pyarrow date and timestamp type conversion from pydantic (#576) 2024-04-05 16:22:59 -07:00
Lei Xu
7b5bfadab2 chore: bump lance to 0.8.5 (#561)
Bump lance to 0.5.8
2024-04-05 16:22:59 -07:00
Ayush Chaurasia
0e9a7f0dc7 Add cohere embedding function (#550) 2024-04-05 16:22:59 -07:00
Will Jones
c07207c661 feat: cleanup and compaction (#518)
#488
2024-04-05 16:22:59 -07:00
Chang She
8469d010f8 feat: add to_list and to_pandas api's (#556)
Add `to_list` to return query results as list of python dict (so we're
not too pandas-centric). Closes #555

Add `to_pandas` API and add deprecation warning on `to_df`. Closes #545

Co-authored-by: Chang She <chang@lancedb.com>
2024-04-05 16:22:59 -07:00
Lei Xu
a26c8f3316 feat: use GPU for index creation. (#540)
Bump lance to 0.8.3 to include GPU training

---------

Co-authored-by: Rob Meng <rob.xu.meng@gmail.com>
2023-10-05 20:49:00 -07:00
Chang She
693bca1eba feat(python): expose prefilter to lancedb (#522)
We have experimental support for prefiltering (without ANN) in pylance.
This means that we can now apply a filter BEFORE vector search is
performed. This can be done via the `.where(filter_string,
prefilter=True)` kwargs of the query.

Limitations:
- When connecting to LanceDB cloud, `prefilter=True` will raise
NotImplemented
- When an ANN index is present, `prefilter=True` will raise
NotImplemented
- This option is not available for full text search query
- This option is not available for empty search query (just
filter/project)

Additional changes in this PR:
- Bump pylance version to v0.8.0 which supports the experimental
prefiltering.

---------

Co-authored-by: Chang She <chang@lancedb.com>
2023-10-01 10:34:12 -07:00
Rob Meng
a695fb8030 fix import attr to use import attrs (#510)
Thanks to #508, I used `attr` instead of the correct package `attrs`

s/attr/attrs
2023-09-23 00:30:56 -04:00
Chang She
c21f9cdda0 ci: fix docs build (#496)
python/python.md contains typos in the class references

---------

Co-authored-by: Chang She <chang@lancedb.com>
2023-09-18 13:07:21 -07:00
Chang She
31dad71c94 multi-modal embedding-function (#484) 2023-09-16 21:23:51 -04:00
Lei Xu
b315ea3978 [Python] Pydantic vector field with default value (#474)
Rename `lance.pydantic.vector` to `Vector` and deprecate `vector(dim)`
2023-09-08 22:35:31 -07:00
Ayush Chaurasia
aa7806cf0d [Python]Fix record_batch_generator (#483)
Should fix - https://github.com/lancedb/lancedb/issues/482
2023-09-08 21:18:50 +05:30
Chang She
9a9a73a65d [python] Use pydantic for embedding function persistence (#467)
1. Support persistent embedding function so users can just search using
query string
2. Add fixed size list conversion for multiple vector columns
3. Add support for empty query (just apply select/where/limit).
4. Refactor and simplify some of the data prep code

---------

Co-authored-by: Chang She <chang@lancedb.com>
Co-authored-by: Weston Pace <weston.pace@gmail.com>
2023-09-05 21:30:45 -07:00
Chang She
0cba0f4f92 [python] Temporary update feature (#457)
Combine delete and append to make a temporary update feature that is
only enabled for the local python lancedb.

The reason why this is temporary is because it first has to load the
data that matches the where clause into memory, which is technical
unbounded.

---------

Co-authored-by: Chang She <chang@lancedb.com>
2023-08-30 00:25:26 -07:00
Chang She
e587a17a64 [python] Support schema evolution in local LanceDB (#452)
Previously if you needed to add a column to a table you'd have to
rewrite the whole table. Instead,
we use the merge functionality from Lance format
to incrementally add columns from another table
or dataframe.

---------

Co-authored-by: Chang She <chang@lancedb.com>
Co-authored-by: Weston Pace <weston.pace@gmail.com>
2023-08-24 14:40:49 -07:00
Chang She
2f1f9f6338 [python] improve restore functionality (#451)
Previously the temporary restore feature required copying data. The new
feature in pylance does not.

---------

Co-authored-by: Chang She <chang@lancedb.com>
Co-authored-by: Weston Pace <weston.pace@gmail.com>
2023-08-24 11:00:34 -07:00
Ayush Chaurasia
0b9924b432 Make creating (and adding to) tables via Iterators more flexible & intuitive (#430)
It improves the UX as iterators can be of any type supported by the
table (plus recordbatch) & there is no separate requirement.
Also expands the test cases for pydantic & arrow schema.
If this is looks good I'll update the docs.

Example usage:
```
class Content(LanceModel):
    vector: vector(2)
    item: str
    price: float

def make_batches():
    for _ in range(5):
        yield from [ 
        # pandas
        pd.DataFrame({
            "vector": [[3.1, 4.1], [1, 1]],
            "item": ["foo", "bar"],
            "price": [10.0, 20.0],
        }),
        
        # pylist
        [
            {"vector": [3.1, 4.1], "item": "foo", "price": 10.0},
            {"vector": [5.9, 26.5], "item": "bar", "price": 20.0},
        ],

        # recordbatch
        pa.RecordBatch.from_arrays(
            [
                pa.array([[3.1, 4.1], [5.9, 26.5]], pa.list_(pa.float32(), 2)),
                pa.array(["foo", "bar"]),
                pa.array([10.0, 20.0]),
            ], 
            ["vector", "item", "price"],
        ),

        # pydantic list
        [
            Content(vector=[3.1, 4.1], item="foo", price=10.0),
            Content(vector=[5.9, 26.5], item="bar", price=20.0),
        ]]

db = lancedb.connect("db")
tbl = db.create_table("tabley", make_batches(), schema=Content, mode="overwrite")

tbl.add(make_batches())
```
Same should with arrow schema.

---------

Co-authored-by: Weston Pace <weston.pace@gmail.com>
2023-08-18 09:56:30 +05:30
Chang She
e3061d4cb4 [python] Temporary restore feature (#428)
This adds LanceTable.restore as a temporary feature. It reads data from
a previous version and creates
a new snapshot version using that data. This makes the version writeable
unlike checkout. This should be replaced once the feature is implemented
in pylance.

Co-authored-by: Chang She <chang@lancedb.com>
2023-08-14 20:10:29 -07:00
Will Jones
722462c38b chore: upgrade Lance and rename score to _distance (#398)
BREAKING CHANGE: The `score` column has been renamed to `_distance` to
more accurately describe the semantics (smaller means closer / better).

---------

Co-authored-by: Lei Xu <lei@lancedb.com>
2023-08-11 21:42:33 -07:00
Ashis Kumar Naik
902a402951 implementation of drop_database (#418)
#416 Fixed.

added drop_database() method . This deletes all the tables from the
database with a single command.

---------

Signed-off-by: Ashis Kumar Naik <ashishami2002@gmail.com>
2023-08-11 20:59:56 -07:00
Chang She
a54d1e5618 Automatically convert pydantic model (#400)
Saves users from having to explicitly call
`LanceModel.to_arrow_schema()` when creating an empty table.
See new docs for full details.

---------

Co-authored-by: Chang She <chang@lancedb.com>
2023-08-06 14:50:03 -07:00
Ayush Chaurasia
bbfadfe58d [python] Allow adding via iterators (#391)
Makes the following work so all the formats accepted by `create_table()`
are also accepted by `add()`
```
import lancedb
import pyarrow as pa

db = lancedb.connect("/tmp")

def make_batches():
    for i in range(5):
        yield pa.RecordBatch.from_arrays(
            [
                pa.array([[3.1, 4.1], [5.9, 26.5]]),
                pa.array(["foo", "bar"]),
                pa.array([10.0, 20.0]),
            ],
            ["vector", "item", "price"],
        )

schema = pa.schema([
    pa.field("vector", pa.list_(pa.float32())),
    pa.field("item", pa.utf8()),
    pa.field("price", pa.float32()),
])

tbl = db.create_table("table4", make_batches(), schema=schema)
tbl.add(make_batches())
```
2023-08-04 12:49:44 -07:00
Chang She
cada35d5b7 Improve pydantic integration (#384) 2023-07-31 12:16:44 -04:00
Chang She
2d25c263e9 Implement drop table if exists (#383) 2023-07-31 10:25:09 +02:00
Lei Xu
63acdc2069 [Python] Support pydantic v1 as well (#337)
Support both Pydantic v1 and v2 (breaking changes)
2023-07-18 19:53:09 -07:00
Lei Xu
f09db4a6d6 [Python] Do not return Table count for every add operation (#328)
`Table::count()` will be linearly slower with more fragments ingested.
2023-07-18 17:11:17 -07:00
Lei Xu
088e745e1d [Python] Create table with Iterator[RecordBatch] and add docs (#316) 2023-07-16 21:45:55 -07:00
Lei Xu
028a6e433d [Python] Get table schema (#313) 2023-07-15 17:39:37 -07:00