Compare commits

..

2 Commits

Author SHA1 Message Date
Gatefixer 88d8a69a99 fix(python): scope Instructor compatibility shim 2026-08-06 01:30:35 +00:00
Gatefixer bd779bb7d5 fix(python): support legacy InstructorEmbedding downloads 2026-08-06 01:12:01 +00:00
5 changed files with 112 additions and 446 deletions
-15
View File
@@ -180,21 +180,6 @@ instead of being materialized with the rest of the row.
::: lancedb.otel.instrument_lancedb_metrics
## Legacy V2 migration
Tables created with the experimental V2 format in LanceDB Node 0.5.x can be
rewritten with the legacy PyLance reader. In a dedicated environment, install
LanceDB normally, then install the legacy reader without its obsolete PyArrow
upper bound and run the migration:
```shell
pip install lancedb
pip install --no-deps pylance==0.12.1
python -m lancedb.legacy_v2 <database-uri>
```
::: lancedb.legacy_v2.migrate_legacy_v2_tables
## Exceptions
::: lancedb.exceptions.MissingValueError
+56 -3
View File
@@ -3,6 +3,7 @@
from typing import List
from urllib.parse import unquote, urlparse
import numpy as np
@@ -125,9 +126,20 @@ class InstructorEmbeddingFunction(TextEmbeddingFunction):
@weak_lru(maxsize=1)
def get_model(self):
instructor_embedding = attempt_import_or_raise(
"InstructorEmbedding", "InstructorEmbedding"
)
huggingface_hub = attempt_import_or_raise("huggingface_hub", "huggingface-hub")
missing = object()
original_cached_download = getattr(huggingface_hub, "cached_download", missing)
if original_cached_download is missing:
huggingface_hub.cached_download = _cached_download(huggingface_hub)
try:
instructor_embedding = attempt_import_or_raise(
"InstructorEmbedding", "InstructorEmbedding"
)
finally:
if original_cached_download is missing:
del huggingface_hub.cached_download
torch = attempt_import_or_raise("torch", "torch")
model = instructor_embedding.INSTRUCTOR(self.name)
@@ -140,3 +152,44 @@ class InstructorEmbeddingFunction(TextEmbeddingFunction):
model, {torch.nn.Linear}, dtype=torch.qint8
)
return model
def _cached_download(huggingface_hub):
"""Provide the legacy download API used by sentence-transformers 2.2.x."""
def cached_download(
*,
url,
cache_dir=None,
force_filename=None,
library_name=None,
library_version=None,
user_agent=None,
use_auth_token=None,
**_,
):
path = urlparse(url).path.lstrip("/")
try:
repo_id, resolved_path = path.split("/resolve/", maxsplit=1)
revision, filename = resolved_path.split("/", maxsplit=1)
except ValueError as err:
raise ValueError(f"Unsupported Hugging Face Hub URL: {url}") from err
repo_id = unquote(repo_id)
revision = unquote(revision)
filename = unquote(filename)
# sentence-transformers derives force_filename from this Hub path with
# os.path.join. Using the URL path beneath local_dir produces the same
# local destination without sending Windows separators to the Hub.
return huggingface_hub.hf_hub_download(
repo_id=repo_id,
filename=filename,
revision=revision,
local_dir=cache_dir,
library_name=library_name,
library_version=library_version,
user_agent=user_agent,
token=use_auth_token,
)
return cached_download
-263
View File
@@ -1,263 +0,0 @@
# SPDX-License-Identifier: Apache-2.0
# SPDX-FileCopyrightText: Copyright The LanceDB Authors
"""Recovery utilities for the experimental V2 format used by old Node releases."""
from __future__ import annotations
import argparse
import asyncio
import inspect
import warnings
from collections.abc import Iterable
from typing import Any
from packaging.version import Version
import lancedb
__all__ = ["migrate_legacy_v2_tables"]
_LEGACY_LANCE_VERSION = Version("0.12.1")
_LEGACY_V2_ERROR_MARKERS = (
"missing columnencoding encoding description",
"missing lance.encodings.columnencoding encoding description",
"was missing a columnencoding",
"rust future panicked",
"panic in async function",
)
def _require_legacy_lance() -> Any:
try:
import lance
except ImportError as error:
raise RuntimeError(
"Legacy V2 migration requires pylance==0.12.1. Install it in a "
"dedicated environment with "
"`pip install --no-deps pylance==0.12.1`."
) from error
version = Version(lance.__version__)
if version != _LEGACY_LANCE_VERSION:
raise RuntimeError(
"Legacy V2 migration requires pylance==0.12.1, but found "
f"pylance=={version}. Reinstall it with "
"`pip install --no-deps --force-reinstall pylance==0.12.1`."
)
return lance
def _exception_messages(error: BaseException) -> Iterable[str]:
seen: set[int] = set()
current: BaseException | None = error
while current is not None and id(current) not in seen:
seen.add(id(current))
yield str(current).lower()
current = current.__cause__ or current.__context__
def _is_legacy_v2_error(error: BaseException) -> bool:
return any(
marker in message
for message in _exception_messages(error)
for marker in _LEGACY_V2_ERROR_MARKERS
)
def _list_table_names(db: Any) -> list[str]:
list_tables = getattr(db, "list_tables", None)
if list_tables is not None:
# The deprecated table_names() API defaults to only ten results.
return list(list_tables(limit=None).tables)
# Compatibility for LanceDB 0.16, which was used by the original script.
with warnings.catch_warnings():
warnings.simplefilter("ignore", DeprecationWarning)
return list(db.table_names())
async def _needs_migration(db: Any, table_name: str) -> bool:
table = await db.open_table(table_name)
try:
# One row is enough to load and validate the data-file metadata.
await table.query().limit(1).to_arrow()
except (KeyboardInterrupt, SystemExit, GeneratorExit):
raise
except BaseException as error:
if _is_legacy_v2_error(error):
return True
raise
return False
async def _create_migrated_table(
db: Any, table_name: str, reader: Any, storage_format: str
) -> Any:
parameters = inspect.signature(db.create_table).parameters
options: dict[str, Any] = {"mode": "overwrite"}
if "data_storage_version" in parameters:
# LanceDB 0.16 exposed the format as a direct create_table option.
options["data_storage_version"] = storage_format
else:
options["storage_options"] = {"new_table_data_storage_version": storage_format}
return await db.create_table(table_name, reader, **options)
async def _migrate_table(
source_db: Any,
destination_db: Any,
table_name: str,
storage_format: str,
) -> int:
source_table = source_db.open_table(table_name)
source_dataset = source_table.to_lance()
source_rows = source_dataset.count_rows()
reader = source_dataset.scanner().to_reader()
migrated_table = await _create_migrated_table(
destination_db, table_name, reader, storage_format
)
migrated_rows = await migrated_table.count_rows()
if migrated_rows != source_rows:
raise RuntimeError(
f"Migration of table {table_name!r} wrote {migrated_rows} rows; "
f"expected {source_rows}."
)
# Force the current reader to load data-file metadata before reporting success.
await migrated_table.query().limit(1).to_arrow()
return migrated_rows
async def migrate_legacy_v2_tables(
uri: str,
*,
table_name: str | None = None,
destination_uri: str | None = None,
storage_format: str = "2.0",
show_progress: bool = True,
) -> list[str]:
"""Migrate tables written with the incompatible experimental V2 format.
LanceDB Node 0.5.x could enable an experimental data format when an empty
table was created and data was added later. Those files panic older modern
readers and are rejected by newer readers. This utility streams them through
``pylance==0.12.1`` and rewrites them in a supported format.
Install the legacy reader in a dedicated environment before running this
function::
pip install lancedb
pip install --no-deps pylance==0.12.1
``--no-deps`` is required because the legacy wheel declares an obsolete
PyArrow upper bound. The migration uses only its dataset scanner and writes
through the current LanceDB package.
This migration is available only for local/OSS databases, including object
storage URIs. It is not supported for LanceDB Cloud ``db://`` connections.
In-place migration creates a new table version, so old data remains available
for recovery until old versions are cleaned up. Table indices are not copied
and should be rebuilt after migration.
Parameters
----------
uri : str
Source LanceDB database URI.
table_name : str, optional
Migrate only this table. By default, inspect every table.
destination_uri : str, optional
Write to another database. By default, migrate in place.
storage_format : str, default "2.0"
Data storage format for the rewritten tables. Use ``"0.1"`` for
compatibility with older LanceDB releases.
show_progress : bool, default True
Display progress bars while inspecting and migrating tables.
Returns
-------
list of str
Names of the migrated tables.
"""
if uri.startswith("db://") or (
destination_uri is not None and destination_uri.startswith("db://")
):
raise ValueError("Legacy V2 migration is supported only for local/OSS tables")
# Import and validate before opening or modifying any table.
_require_legacy_lance()
source_db = lancedb.connect(uri)
async_source_db = await lancedb.connect_async(uri)
destination_db = (
async_source_db
if destination_uri is None or destination_uri == uri
else await lancedb.connect_async(destination_uri)
)
if table_name is not None:
table_names = [table_name]
else:
table_names = _list_table_names(source_db)
inspection: Iterable[str] = table_names
if show_progress:
from tqdm.auto import tqdm
inspection = tqdm(table_names, desc="Checking tables")
tables_to_migrate = [
name for name in inspection if await _needs_migration(async_source_db, name)
]
migration: Iterable[str] = tables_to_migrate
if show_progress:
from tqdm.auto import tqdm
migration = tqdm(tables_to_migrate, desc="Migrating tables")
migrated = []
for name in migration:
await _migrate_table(source_db, destination_db, name, storage_format)
migrated.append(name)
return migrated
def _parser() -> argparse.ArgumentParser:
parser = argparse.ArgumentParser(
description="Migrate tables written with the old experimental V2 format."
)
parser.add_argument("uri", help="source LanceDB database URI")
parser.add_argument("--table-name", help="migrate only this table")
parser.add_argument("--destination-uri", help="write to another database URI")
parser.add_argument(
"--storage-format",
default="2.0",
help='destination data format (default: "2.0"; use "0.1" for compatibility)',
)
parser.add_argument(
"--no-progress", action="store_true", help="disable progress bars"
)
return parser
def main() -> None:
args = _parser().parse_args()
migrated = asyncio.run(
migrate_legacy_v2_tables(
args.uri,
table_name=args.table_name,
destination_uri=args.destination_uri,
storage_format=args.storage_format,
show_progress=not args.no_progress,
)
)
if migrated:
print(f"Migrated {len(migrated)} table(s): {', '.join(migrated)}")
else:
print("No legacy V2 tables found")
if __name__ == "__main__":
main()
+56
View File
@@ -1,8 +1,11 @@
# SPDX-License-Identifier: Apache-2.0
# SPDX-FileCopyrightText: Copyright The LanceDB Authors
import ntpath
import os
import pickle
import sys
from types import ModuleType
from typing import List, Optional, Union
from unittest.mock import MagicMock, patch
@@ -522,6 +525,59 @@ def test_embedding_function_safe_model_dump(embedding_type):
)
def test_instructor_embedding_supports_huggingface_hub_without_cached_download(
tmp_path, monkeypatch
):
from lancedb.embeddings.instructor import InstructorEmbeddingFunction
hub_download = MagicMock(return_value="/cache/1_Pooling/config.json")
huggingface_hub = ModuleType("huggingface_hub")
huggingface_hub.hf_hub_download = hub_download
torch = ModuleType("torch")
monkeypatch.setitem(sys.modules, "huggingface_hub", huggingface_hub)
monkeypatch.setitem(sys.modules, "torch", torch)
monkeypatch.delitem(sys.modules, "InstructorEmbedding", raising=False)
monkeypatch.syspath_prepend(str(tmp_path))
(tmp_path / "InstructorEmbedding.py").write_text(
"from huggingface_hub import cached_download\n\n"
"class INSTRUCTOR:\n"
" def __init__(self, name):\n"
" self.name = name\n"
)
embedding = InstructorEmbeddingFunction.create(show_progress_bar=False)
instructor_model = embedding.get_model()
assert instructor_model.name == "hkunlp/instructor-base"
assert not hasattr(huggingface_hub, "cached_download")
instructor_embedding = sys.modules["InstructorEmbedding"]
path = instructor_embedding.cached_download(
url=(
"https://huggingface.co/hkunlp/instructor-base/resolve/abc123/"
"1_Pooling/config.json"
),
cache_dir="/cache",
force_filename=ntpath.join("1_Pooling", "config.json"),
library_name="sentence-transformers",
library_version="2.2.2",
use_auth_token="token",
)
assert path == "/cache/1_Pooling/config.json"
hub_download.assert_called_once_with(
repo_id="hkunlp/instructor-base",
filename="1_Pooling/config.json",
revision="abc123",
local_dir="/cache",
library_name="sentence-transformers",
library_version="2.2.2",
user_agent=None,
token="token",
)
@patch("time.sleep")
def test_retry(mock_sleep):
test_function = MagicMock(side_effect=[Exception] * 9 + ["result"])
-165
View File
@@ -1,165 +0,0 @@
from unittest.mock import AsyncMock, Mock
import pytest
from lancedb import legacy_v2
class FakeQuery:
def __init__(self, error=None):
self.error = error
def limit(self, _limit):
return self
async def to_arrow(self):
if self.error is not None:
raise self.error
return None
class FakeAsyncTable:
def __init__(self, rows=2, error=None):
self.rows = rows
self.error = error
def query(self):
return FakeQuery(self.error)
async def count_rows(self):
return self.rows
class FakeDataset:
def __init__(self, reader, rows=2):
self.reader = reader
self.rows = rows
def count_rows(self):
return self.rows
def scanner(self):
scanner = Mock()
scanner.to_reader.return_value = self.reader
return scanner
@pytest.mark.asyncio
@pytest.mark.parametrize(
"message",
[
"rust future panicked: unknown error",
"Panic in async function",
"Missing ColumnEncoding encoding description",
"Missing lance.encodings.ColumnEncoding encoding description",
"the column at index 0 was missing a ColumnEncoding",
],
)
async def test_needs_migration_recognizes_legacy_reader_errors(message):
db = Mock()
db.open_table = AsyncMock(return_value=FakeAsyncTable(error=RuntimeError(message)))
assert await legacy_v2._needs_migration(db, "legacy")
@pytest.mark.asyncio
async def test_needs_migration_propagates_unrelated_errors():
db = Mock()
db.open_table = AsyncMock(
return_value=FakeAsyncTable(error=RuntimeError("permission denied"))
)
with pytest.raises(RuntimeError, match="permission denied"):
await legacy_v2._needs_migration(db, "legacy")
@pytest.mark.asyncio
async def test_migration_streams_and_verifies_rows(monkeypatch):
reader = object()
source_dataset = FakeDataset(reader)
source_table = Mock()
source_table.to_lance.return_value = source_dataset
source_db = Mock()
source_db.list_tables.return_value.tables = ["healthy", "legacy"]
source_db.open_table.return_value = source_table
legacy_error = RuntimeError(
"Missing lance.encodings.ColumnEncoding encoding description"
)
async_source_db = Mock()
async def open_table(name):
if name == "legacy":
return FakeAsyncTable(error=legacy_error)
return FakeAsyncTable()
async_source_db.open_table = open_table
create_calls = []
async def create_table(name, data, *, mode, storage_options):
create_calls.append((name, data, mode, storage_options))
return FakeAsyncTable()
async_source_db.create_table = create_table
monkeypatch.setattr(legacy_v2, "_require_legacy_lance", Mock())
monkeypatch.setattr(legacy_v2.lancedb, "connect", Mock(return_value=source_db))
async def connect_async(_uri):
return async_source_db
monkeypatch.setattr(legacy_v2.lancedb, "connect_async", connect_async)
migrated = await legacy_v2.migrate_legacy_v2_tables("/data/db", show_progress=False)
assert migrated == ["legacy"]
source_db.list_tables.assert_called_once_with(limit=None)
assert create_calls == [
(
"legacy",
reader,
"overwrite",
{"new_table_data_storage_version": "2.0"},
)
]
def test_list_table_names_supports_legacy_connection():
db = Mock(spec=["table_names"])
db.table_names.return_value = [f"table_{index}" for index in range(12)]
assert len(legacy_v2._list_table_names(db)) == 12
@pytest.mark.asyncio
async def test_create_table_uses_legacy_storage_parameter():
calls = []
class LegacyConnection:
async def create_table(self, name, data, *, mode, data_storage_version=None):
calls.append((name, data, mode, data_storage_version))
return FakeAsyncTable()
reader = object()
await legacy_v2._create_migrated_table(LegacyConnection(), "legacy", reader, "0.1")
assert calls == [("legacy", reader, "overwrite", "0.1")]
def test_requires_exact_legacy_lance_version(monkeypatch):
fake_lance = Mock(__version__="9.0.0")
monkeypatch.setitem(__import__("sys").modules, "lance", fake_lance)
with pytest.raises(RuntimeError, match="requires pylance==0.12.1"):
legacy_v2._require_legacy_lance()
@pytest.mark.asyncio
async def test_cloud_migration_is_rejected_before_dependency_check(monkeypatch):
require_lance = Mock()
monkeypatch.setattr(legacy_v2, "_require_legacy_lance", require_lance)
with pytest.raises(ValueError, match="only for local/OSS"):
await legacy_v2.migrate_legacy_v2_tables("db://example")
require_lance.assert_not_called()