mirror of
https://github.com/lancedb/lancedb.git
synced 2026-09-02 03:28:41 +00:00
Compare commits
2 Commits
| Author | SHA1 | Date | |
|---|---|---|---|
| 88d8a69a99 | |||
| bd779bb7d5 |
@@ -180,21 +180,6 @@ instead of being materialized with the rest of the row.
|
||||
|
||||
::: lancedb.otel.instrument_lancedb_metrics
|
||||
|
||||
## Legacy V2 migration
|
||||
|
||||
Tables created with the experimental V2 format in LanceDB Node 0.5.x can be
|
||||
rewritten with the legacy PyLance reader. In a dedicated environment, install
|
||||
LanceDB normally, then install the legacy reader without its obsolete PyArrow
|
||||
upper bound and run the migration:
|
||||
|
||||
```shell
|
||||
pip install lancedb
|
||||
pip install --no-deps pylance==0.12.1
|
||||
python -m lancedb.legacy_v2 <database-uri>
|
||||
```
|
||||
|
||||
::: lancedb.legacy_v2.migrate_legacy_v2_tables
|
||||
|
||||
## Exceptions
|
||||
|
||||
::: lancedb.exceptions.MissingValueError
|
||||
|
||||
@@ -3,6 +3,7 @@
|
||||
|
||||
|
||||
from typing import List
|
||||
from urllib.parse import unquote, urlparse
|
||||
|
||||
import numpy as np
|
||||
|
||||
@@ -125,9 +126,20 @@ class InstructorEmbeddingFunction(TextEmbeddingFunction):
|
||||
|
||||
@weak_lru(maxsize=1)
|
||||
def get_model(self):
|
||||
instructor_embedding = attempt_import_or_raise(
|
||||
"InstructorEmbedding", "InstructorEmbedding"
|
||||
)
|
||||
huggingface_hub = attempt_import_or_raise("huggingface_hub", "huggingface-hub")
|
||||
missing = object()
|
||||
original_cached_download = getattr(huggingface_hub, "cached_download", missing)
|
||||
if original_cached_download is missing:
|
||||
huggingface_hub.cached_download = _cached_download(huggingface_hub)
|
||||
|
||||
try:
|
||||
instructor_embedding = attempt_import_or_raise(
|
||||
"InstructorEmbedding", "InstructorEmbedding"
|
||||
)
|
||||
finally:
|
||||
if original_cached_download is missing:
|
||||
del huggingface_hub.cached_download
|
||||
|
||||
torch = attempt_import_or_raise("torch", "torch")
|
||||
|
||||
model = instructor_embedding.INSTRUCTOR(self.name)
|
||||
@@ -140,3 +152,44 @@ class InstructorEmbeddingFunction(TextEmbeddingFunction):
|
||||
model, {torch.nn.Linear}, dtype=torch.qint8
|
||||
)
|
||||
return model
|
||||
|
||||
|
||||
def _cached_download(huggingface_hub):
|
||||
"""Provide the legacy download API used by sentence-transformers 2.2.x."""
|
||||
|
||||
def cached_download(
|
||||
*,
|
||||
url,
|
||||
cache_dir=None,
|
||||
force_filename=None,
|
||||
library_name=None,
|
||||
library_version=None,
|
||||
user_agent=None,
|
||||
use_auth_token=None,
|
||||
**_,
|
||||
):
|
||||
path = urlparse(url).path.lstrip("/")
|
||||
try:
|
||||
repo_id, resolved_path = path.split("/resolve/", maxsplit=1)
|
||||
revision, filename = resolved_path.split("/", maxsplit=1)
|
||||
except ValueError as err:
|
||||
raise ValueError(f"Unsupported Hugging Face Hub URL: {url}") from err
|
||||
|
||||
repo_id = unquote(repo_id)
|
||||
revision = unquote(revision)
|
||||
filename = unquote(filename)
|
||||
# sentence-transformers derives force_filename from this Hub path with
|
||||
# os.path.join. Using the URL path beneath local_dir produces the same
|
||||
# local destination without sending Windows separators to the Hub.
|
||||
return huggingface_hub.hf_hub_download(
|
||||
repo_id=repo_id,
|
||||
filename=filename,
|
||||
revision=revision,
|
||||
local_dir=cache_dir,
|
||||
library_name=library_name,
|
||||
library_version=library_version,
|
||||
user_agent=user_agent,
|
||||
token=use_auth_token,
|
||||
)
|
||||
|
||||
return cached_download
|
||||
|
||||
@@ -1,263 +0,0 @@
|
||||
# SPDX-License-Identifier: Apache-2.0
|
||||
# SPDX-FileCopyrightText: Copyright The LanceDB Authors
|
||||
|
||||
"""Recovery utilities for the experimental V2 format used by old Node releases."""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import argparse
|
||||
import asyncio
|
||||
import inspect
|
||||
import warnings
|
||||
from collections.abc import Iterable
|
||||
from typing import Any
|
||||
|
||||
from packaging.version import Version
|
||||
|
||||
import lancedb
|
||||
|
||||
__all__ = ["migrate_legacy_v2_tables"]
|
||||
|
||||
_LEGACY_LANCE_VERSION = Version("0.12.1")
|
||||
_LEGACY_V2_ERROR_MARKERS = (
|
||||
"missing columnencoding encoding description",
|
||||
"missing lance.encodings.columnencoding encoding description",
|
||||
"was missing a columnencoding",
|
||||
"rust future panicked",
|
||||
"panic in async function",
|
||||
)
|
||||
|
||||
|
||||
def _require_legacy_lance() -> Any:
|
||||
try:
|
||||
import lance
|
||||
except ImportError as error:
|
||||
raise RuntimeError(
|
||||
"Legacy V2 migration requires pylance==0.12.1. Install it in a "
|
||||
"dedicated environment with "
|
||||
"`pip install --no-deps pylance==0.12.1`."
|
||||
) from error
|
||||
|
||||
version = Version(lance.__version__)
|
||||
if version != _LEGACY_LANCE_VERSION:
|
||||
raise RuntimeError(
|
||||
"Legacy V2 migration requires pylance==0.12.1, but found "
|
||||
f"pylance=={version}. Reinstall it with "
|
||||
"`pip install --no-deps --force-reinstall pylance==0.12.1`."
|
||||
)
|
||||
return lance
|
||||
|
||||
|
||||
def _exception_messages(error: BaseException) -> Iterable[str]:
|
||||
seen: set[int] = set()
|
||||
current: BaseException | None = error
|
||||
while current is not None and id(current) not in seen:
|
||||
seen.add(id(current))
|
||||
yield str(current).lower()
|
||||
current = current.__cause__ or current.__context__
|
||||
|
||||
|
||||
def _is_legacy_v2_error(error: BaseException) -> bool:
|
||||
return any(
|
||||
marker in message
|
||||
for message in _exception_messages(error)
|
||||
for marker in _LEGACY_V2_ERROR_MARKERS
|
||||
)
|
||||
|
||||
|
||||
def _list_table_names(db: Any) -> list[str]:
|
||||
list_tables = getattr(db, "list_tables", None)
|
||||
if list_tables is not None:
|
||||
# The deprecated table_names() API defaults to only ten results.
|
||||
return list(list_tables(limit=None).tables)
|
||||
|
||||
# Compatibility for LanceDB 0.16, which was used by the original script.
|
||||
with warnings.catch_warnings():
|
||||
warnings.simplefilter("ignore", DeprecationWarning)
|
||||
return list(db.table_names())
|
||||
|
||||
|
||||
async def _needs_migration(db: Any, table_name: str) -> bool:
|
||||
table = await db.open_table(table_name)
|
||||
try:
|
||||
# One row is enough to load and validate the data-file metadata.
|
||||
await table.query().limit(1).to_arrow()
|
||||
except (KeyboardInterrupt, SystemExit, GeneratorExit):
|
||||
raise
|
||||
except BaseException as error:
|
||||
if _is_legacy_v2_error(error):
|
||||
return True
|
||||
raise
|
||||
return False
|
||||
|
||||
|
||||
async def _create_migrated_table(
|
||||
db: Any, table_name: str, reader: Any, storage_format: str
|
||||
) -> Any:
|
||||
parameters = inspect.signature(db.create_table).parameters
|
||||
options: dict[str, Any] = {"mode": "overwrite"}
|
||||
if "data_storage_version" in parameters:
|
||||
# LanceDB 0.16 exposed the format as a direct create_table option.
|
||||
options["data_storage_version"] = storage_format
|
||||
else:
|
||||
options["storage_options"] = {"new_table_data_storage_version": storage_format}
|
||||
return await db.create_table(table_name, reader, **options)
|
||||
|
||||
|
||||
async def _migrate_table(
|
||||
source_db: Any,
|
||||
destination_db: Any,
|
||||
table_name: str,
|
||||
storage_format: str,
|
||||
) -> int:
|
||||
source_table = source_db.open_table(table_name)
|
||||
source_dataset = source_table.to_lance()
|
||||
source_rows = source_dataset.count_rows()
|
||||
reader = source_dataset.scanner().to_reader()
|
||||
|
||||
migrated_table = await _create_migrated_table(
|
||||
destination_db, table_name, reader, storage_format
|
||||
)
|
||||
migrated_rows = await migrated_table.count_rows()
|
||||
if migrated_rows != source_rows:
|
||||
raise RuntimeError(
|
||||
f"Migration of table {table_name!r} wrote {migrated_rows} rows; "
|
||||
f"expected {source_rows}."
|
||||
)
|
||||
|
||||
# Force the current reader to load data-file metadata before reporting success.
|
||||
await migrated_table.query().limit(1).to_arrow()
|
||||
return migrated_rows
|
||||
|
||||
|
||||
async def migrate_legacy_v2_tables(
|
||||
uri: str,
|
||||
*,
|
||||
table_name: str | None = None,
|
||||
destination_uri: str | None = None,
|
||||
storage_format: str = "2.0",
|
||||
show_progress: bool = True,
|
||||
) -> list[str]:
|
||||
"""Migrate tables written with the incompatible experimental V2 format.
|
||||
|
||||
LanceDB Node 0.5.x could enable an experimental data format when an empty
|
||||
table was created and data was added later. Those files panic older modern
|
||||
readers and are rejected by newer readers. This utility streams them through
|
||||
``pylance==0.12.1`` and rewrites them in a supported format.
|
||||
|
||||
Install the legacy reader in a dedicated environment before running this
|
||||
function::
|
||||
|
||||
pip install lancedb
|
||||
pip install --no-deps pylance==0.12.1
|
||||
|
||||
``--no-deps`` is required because the legacy wheel declares an obsolete
|
||||
PyArrow upper bound. The migration uses only its dataset scanner and writes
|
||||
through the current LanceDB package.
|
||||
|
||||
This migration is available only for local/OSS databases, including object
|
||||
storage URIs. It is not supported for LanceDB Cloud ``db://`` connections.
|
||||
In-place migration creates a new table version, so old data remains available
|
||||
for recovery until old versions are cleaned up. Table indices are not copied
|
||||
and should be rebuilt after migration.
|
||||
|
||||
Parameters
|
||||
----------
|
||||
uri : str
|
||||
Source LanceDB database URI.
|
||||
table_name : str, optional
|
||||
Migrate only this table. By default, inspect every table.
|
||||
destination_uri : str, optional
|
||||
Write to another database. By default, migrate in place.
|
||||
storage_format : str, default "2.0"
|
||||
Data storage format for the rewritten tables. Use ``"0.1"`` for
|
||||
compatibility with older LanceDB releases.
|
||||
show_progress : bool, default True
|
||||
Display progress bars while inspecting and migrating tables.
|
||||
|
||||
Returns
|
||||
-------
|
||||
list of str
|
||||
Names of the migrated tables.
|
||||
"""
|
||||
if uri.startswith("db://") or (
|
||||
destination_uri is not None and destination_uri.startswith("db://")
|
||||
):
|
||||
raise ValueError("Legacy V2 migration is supported only for local/OSS tables")
|
||||
|
||||
# Import and validate before opening or modifying any table.
|
||||
_require_legacy_lance()
|
||||
|
||||
source_db = lancedb.connect(uri)
|
||||
async_source_db = await lancedb.connect_async(uri)
|
||||
destination_db = (
|
||||
async_source_db
|
||||
if destination_uri is None or destination_uri == uri
|
||||
else await lancedb.connect_async(destination_uri)
|
||||
)
|
||||
|
||||
if table_name is not None:
|
||||
table_names = [table_name]
|
||||
else:
|
||||
table_names = _list_table_names(source_db)
|
||||
|
||||
inspection: Iterable[str] = table_names
|
||||
if show_progress:
|
||||
from tqdm.auto import tqdm
|
||||
|
||||
inspection = tqdm(table_names, desc="Checking tables")
|
||||
|
||||
tables_to_migrate = [
|
||||
name for name in inspection if await _needs_migration(async_source_db, name)
|
||||
]
|
||||
|
||||
migration: Iterable[str] = tables_to_migrate
|
||||
if show_progress:
|
||||
from tqdm.auto import tqdm
|
||||
|
||||
migration = tqdm(tables_to_migrate, desc="Migrating tables")
|
||||
|
||||
migrated = []
|
||||
for name in migration:
|
||||
await _migrate_table(source_db, destination_db, name, storage_format)
|
||||
migrated.append(name)
|
||||
return migrated
|
||||
|
||||
|
||||
def _parser() -> argparse.ArgumentParser:
|
||||
parser = argparse.ArgumentParser(
|
||||
description="Migrate tables written with the old experimental V2 format."
|
||||
)
|
||||
parser.add_argument("uri", help="source LanceDB database URI")
|
||||
parser.add_argument("--table-name", help="migrate only this table")
|
||||
parser.add_argument("--destination-uri", help="write to another database URI")
|
||||
parser.add_argument(
|
||||
"--storage-format",
|
||||
default="2.0",
|
||||
help='destination data format (default: "2.0"; use "0.1" for compatibility)',
|
||||
)
|
||||
parser.add_argument(
|
||||
"--no-progress", action="store_true", help="disable progress bars"
|
||||
)
|
||||
return parser
|
||||
|
||||
|
||||
def main() -> None:
|
||||
args = _parser().parse_args()
|
||||
migrated = asyncio.run(
|
||||
migrate_legacy_v2_tables(
|
||||
args.uri,
|
||||
table_name=args.table_name,
|
||||
destination_uri=args.destination_uri,
|
||||
storage_format=args.storage_format,
|
||||
show_progress=not args.no_progress,
|
||||
)
|
||||
)
|
||||
if migrated:
|
||||
print(f"Migrated {len(migrated)} table(s): {', '.join(migrated)}")
|
||||
else:
|
||||
print("No legacy V2 tables found")
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
main()
|
||||
@@ -1,8 +1,11 @@
|
||||
# SPDX-License-Identifier: Apache-2.0
|
||||
# SPDX-FileCopyrightText: Copyright The LanceDB Authors
|
||||
|
||||
import ntpath
|
||||
import os
|
||||
import pickle
|
||||
import sys
|
||||
from types import ModuleType
|
||||
from typing import List, Optional, Union
|
||||
from unittest.mock import MagicMock, patch
|
||||
|
||||
@@ -522,6 +525,59 @@ def test_embedding_function_safe_model_dump(embedding_type):
|
||||
)
|
||||
|
||||
|
||||
def test_instructor_embedding_supports_huggingface_hub_without_cached_download(
|
||||
tmp_path, monkeypatch
|
||||
):
|
||||
from lancedb.embeddings.instructor import InstructorEmbeddingFunction
|
||||
|
||||
hub_download = MagicMock(return_value="/cache/1_Pooling/config.json")
|
||||
huggingface_hub = ModuleType("huggingface_hub")
|
||||
huggingface_hub.hf_hub_download = hub_download
|
||||
torch = ModuleType("torch")
|
||||
monkeypatch.setitem(sys.modules, "huggingface_hub", huggingface_hub)
|
||||
monkeypatch.setitem(sys.modules, "torch", torch)
|
||||
monkeypatch.delitem(sys.modules, "InstructorEmbedding", raising=False)
|
||||
monkeypatch.syspath_prepend(str(tmp_path))
|
||||
|
||||
(tmp_path / "InstructorEmbedding.py").write_text(
|
||||
"from huggingface_hub import cached_download\n\n"
|
||||
"class INSTRUCTOR:\n"
|
||||
" def __init__(self, name):\n"
|
||||
" self.name = name\n"
|
||||
)
|
||||
|
||||
embedding = InstructorEmbeddingFunction.create(show_progress_bar=False)
|
||||
instructor_model = embedding.get_model()
|
||||
|
||||
assert instructor_model.name == "hkunlp/instructor-base"
|
||||
assert not hasattr(huggingface_hub, "cached_download")
|
||||
|
||||
instructor_embedding = sys.modules["InstructorEmbedding"]
|
||||
path = instructor_embedding.cached_download(
|
||||
url=(
|
||||
"https://huggingface.co/hkunlp/instructor-base/resolve/abc123/"
|
||||
"1_Pooling/config.json"
|
||||
),
|
||||
cache_dir="/cache",
|
||||
force_filename=ntpath.join("1_Pooling", "config.json"),
|
||||
library_name="sentence-transformers",
|
||||
library_version="2.2.2",
|
||||
use_auth_token="token",
|
||||
)
|
||||
|
||||
assert path == "/cache/1_Pooling/config.json"
|
||||
hub_download.assert_called_once_with(
|
||||
repo_id="hkunlp/instructor-base",
|
||||
filename="1_Pooling/config.json",
|
||||
revision="abc123",
|
||||
local_dir="/cache",
|
||||
library_name="sentence-transformers",
|
||||
library_version="2.2.2",
|
||||
user_agent=None,
|
||||
token="token",
|
||||
)
|
||||
|
||||
|
||||
@patch("time.sleep")
|
||||
def test_retry(mock_sleep):
|
||||
test_function = MagicMock(side_effect=[Exception] * 9 + ["result"])
|
||||
|
||||
@@ -1,165 +0,0 @@
|
||||
from unittest.mock import AsyncMock, Mock
|
||||
|
||||
import pytest
|
||||
|
||||
from lancedb import legacy_v2
|
||||
|
||||
|
||||
class FakeQuery:
|
||||
def __init__(self, error=None):
|
||||
self.error = error
|
||||
|
||||
def limit(self, _limit):
|
||||
return self
|
||||
|
||||
async def to_arrow(self):
|
||||
if self.error is not None:
|
||||
raise self.error
|
||||
return None
|
||||
|
||||
|
||||
class FakeAsyncTable:
|
||||
def __init__(self, rows=2, error=None):
|
||||
self.rows = rows
|
||||
self.error = error
|
||||
|
||||
def query(self):
|
||||
return FakeQuery(self.error)
|
||||
|
||||
async def count_rows(self):
|
||||
return self.rows
|
||||
|
||||
|
||||
class FakeDataset:
|
||||
def __init__(self, reader, rows=2):
|
||||
self.reader = reader
|
||||
self.rows = rows
|
||||
|
||||
def count_rows(self):
|
||||
return self.rows
|
||||
|
||||
def scanner(self):
|
||||
scanner = Mock()
|
||||
scanner.to_reader.return_value = self.reader
|
||||
return scanner
|
||||
|
||||
|
||||
@pytest.mark.asyncio
|
||||
@pytest.mark.parametrize(
|
||||
"message",
|
||||
[
|
||||
"rust future panicked: unknown error",
|
||||
"Panic in async function",
|
||||
"Missing ColumnEncoding encoding description",
|
||||
"Missing lance.encodings.ColumnEncoding encoding description",
|
||||
"the column at index 0 was missing a ColumnEncoding",
|
||||
],
|
||||
)
|
||||
async def test_needs_migration_recognizes_legacy_reader_errors(message):
|
||||
db = Mock()
|
||||
db.open_table = AsyncMock(return_value=FakeAsyncTable(error=RuntimeError(message)))
|
||||
|
||||
assert await legacy_v2._needs_migration(db, "legacy")
|
||||
|
||||
|
||||
@pytest.mark.asyncio
|
||||
async def test_needs_migration_propagates_unrelated_errors():
|
||||
db = Mock()
|
||||
db.open_table = AsyncMock(
|
||||
return_value=FakeAsyncTable(error=RuntimeError("permission denied"))
|
||||
)
|
||||
|
||||
with pytest.raises(RuntimeError, match="permission denied"):
|
||||
await legacy_v2._needs_migration(db, "legacy")
|
||||
|
||||
|
||||
@pytest.mark.asyncio
|
||||
async def test_migration_streams_and_verifies_rows(monkeypatch):
|
||||
reader = object()
|
||||
source_dataset = FakeDataset(reader)
|
||||
source_table = Mock()
|
||||
source_table.to_lance.return_value = source_dataset
|
||||
source_db = Mock()
|
||||
source_db.list_tables.return_value.tables = ["healthy", "legacy"]
|
||||
source_db.open_table.return_value = source_table
|
||||
|
||||
legacy_error = RuntimeError(
|
||||
"Missing lance.encodings.ColumnEncoding encoding description"
|
||||
)
|
||||
async_source_db = Mock()
|
||||
|
||||
async def open_table(name):
|
||||
if name == "legacy":
|
||||
return FakeAsyncTable(error=legacy_error)
|
||||
return FakeAsyncTable()
|
||||
|
||||
async_source_db.open_table = open_table
|
||||
create_calls = []
|
||||
|
||||
async def create_table(name, data, *, mode, storage_options):
|
||||
create_calls.append((name, data, mode, storage_options))
|
||||
return FakeAsyncTable()
|
||||
|
||||
async_source_db.create_table = create_table
|
||||
|
||||
monkeypatch.setattr(legacy_v2, "_require_legacy_lance", Mock())
|
||||
monkeypatch.setattr(legacy_v2.lancedb, "connect", Mock(return_value=source_db))
|
||||
|
||||
async def connect_async(_uri):
|
||||
return async_source_db
|
||||
|
||||
monkeypatch.setattr(legacy_v2.lancedb, "connect_async", connect_async)
|
||||
|
||||
migrated = await legacy_v2.migrate_legacy_v2_tables("/data/db", show_progress=False)
|
||||
|
||||
assert migrated == ["legacy"]
|
||||
source_db.list_tables.assert_called_once_with(limit=None)
|
||||
assert create_calls == [
|
||||
(
|
||||
"legacy",
|
||||
reader,
|
||||
"overwrite",
|
||||
{"new_table_data_storage_version": "2.0"},
|
||||
)
|
||||
]
|
||||
|
||||
|
||||
def test_list_table_names_supports_legacy_connection():
|
||||
db = Mock(spec=["table_names"])
|
||||
db.table_names.return_value = [f"table_{index}" for index in range(12)]
|
||||
|
||||
assert len(legacy_v2._list_table_names(db)) == 12
|
||||
|
||||
|
||||
@pytest.mark.asyncio
|
||||
async def test_create_table_uses_legacy_storage_parameter():
|
||||
calls = []
|
||||
|
||||
class LegacyConnection:
|
||||
async def create_table(self, name, data, *, mode, data_storage_version=None):
|
||||
calls.append((name, data, mode, data_storage_version))
|
||||
return FakeAsyncTable()
|
||||
|
||||
reader = object()
|
||||
await legacy_v2._create_migrated_table(LegacyConnection(), "legacy", reader, "0.1")
|
||||
|
||||
assert calls == [("legacy", reader, "overwrite", "0.1")]
|
||||
|
||||
|
||||
def test_requires_exact_legacy_lance_version(monkeypatch):
|
||||
fake_lance = Mock(__version__="9.0.0")
|
||||
monkeypatch.setitem(__import__("sys").modules, "lance", fake_lance)
|
||||
|
||||
with pytest.raises(RuntimeError, match="requires pylance==0.12.1"):
|
||||
legacy_v2._require_legacy_lance()
|
||||
|
||||
|
||||
@pytest.mark.asyncio
|
||||
async def test_cloud_migration_is_rejected_before_dependency_check(monkeypatch):
|
||||
require_lance = Mock()
|
||||
monkeypatch.setattr(legacy_v2, "_require_legacy_lance", require_lance)
|
||||
|
||||
with pytest.raises(ValueError, match="only for local/OSS"):
|
||||
await legacy_v2.migrate_legacy_v2_tables("db://example")
|
||||
|
||||
require_lance.assert_not_called()
|
||||
Reference in New Issue
Block a user