chore: update lance dependency to v9.0.0-beta.4

fix: add missing stacklevel=2 to warnings.warn() and fix broken message concatenation (Fixes #3563 ) (#3564 )
Fixes #3563 ## Summary - Add `stacklevel=2` to 10 `warnings.warn()` calls across 4 files - Fix broken message concatenation in `table.py` where the second string was incorrectly passed as the `category` parameter ## Problem Multiple `warnings.warn()` calls in the `python/lancedb/` codebase were missing the `stacklevel` parameter. Without `stacklevel=2`, warnings point to library internals instead of the caller's code, making it impossible for users to identify which of their function calls triggered the warning. Additionally, two calls in `table.py` (lines 3411 and 3420) had a more serious bug: the deprecation message was split across two separate string arguments, causing the second string to be passed as the `category` parameter instead of being concatenated with the first string. This would cause `TypeError` when the warning was triggered. ## Changes | File | Fixes | Description | |------|-------|-------------| | `embeddings/colpali.py` | 1 | Add `stacklevel=2` to `use_token_pooling` deprecation warning | | `remote/db.py` | 3 | Add `stacklevel=2` to `request_thread_pool`, `connection_timeout`, `read_timeout` deprecation warnings | | `remote/table.py` | 3 | Add `stacklevel=2` to `cleanup_old_versions`, `compact_files`, `optimize` no-op warnings | | `table.py` | 3 | Fix broken message concatenation for `data_storage_version` and `enable_v2_manifest_paths` deprecation warnings + add `stacklevel=2` to `retrain` deprecation warning | ## Verification ```python # All warnings.warn() calls now have stacklevel python3 -c "import ast, os; ..." # Result: All warnings.warn() calls now have stacklevel! ``` ## Changelog | Date | Change | Author | |------|--------|--------| | 2026-06-20 | Fix missing stacklevel=2 in 10 warnings.warn() calls + fix broken message concatenation | rtmalikian | ### Files Changed - `python/python/lancedb/embeddings/colpali.py` — Add stacklevel=2 - `python/python/lancedb/remote/db.py` — Add stacklevel=2 to 3 deprecation warnings - `python/python/lancedb/remote/table.py` — Add stacklevel=2 to 3 no-op warnings - `python/python/lancedb/table.py` — Fix broken message concatenation + add stacklevel=2 ### Verification - AST-based audit confirms all `warnings.warn()` calls now include `stacklevel=2` - Syntax check passes for all 4 modified files --- **About the Author:** Raphael Malikian — Clinical AI Solutions Architect. I specialise in building and fixing AI/ML systems for healthcare, including vector databases, RAG pipelines, and clinical NLP. If you need help with your project or think I can add value to your organisation, feel free to reach out — I'd love to connect. 📧 rtmalikian@gmail.com 🔗 GitHub: https://github.com/rtmalikian 🔗 LinkedIn: http://www.linkedin.com/in/raphael-t-malikian-mbbs-bsc-hons-71075436a --- **Disclosure:** This code was developed with assistance from **Hermes Agent** (Nous Research). All changes were reviewed, tested against the actual codebase, and verified for correctness. Signed-off-by: rtmalikian <rtmalikian@gmail.com>
2026-06-24 06:30:40 +00:00 · 2026-06-24 03:02:56 +00:00 · 2026-06-23 13:42:59 -07:00 · 2026-06-23 16:23:08 +00:00
21 changed files with 94 additions and 84 deletions
--- a/.bumpversion.toml
+++ b/.bumpversion.toml
@@ -1,5 +1,5 @@
 [tool.bumpversion]
-current_version = "0.31.0-beta.1"
+current_version = "0.31.0-beta.2"
 parse = """(?x)
    (?P<major>0|[1-9]\\d*)\\.
    (?P<minor>0|[1-9]\\d*)\\.
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -3432,8 +3432,8 @@ checksum = "42703706b716c37f96a77aea830392ad231f44c9e9a67872fa5548707e11b11c"

 [[package]]
 name = "fsst"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow-array",
 "rand 0.9.4",
@@ -4735,8 +4735,8 @@ checksum = "e037a2e1d8d5fdbd49b16a4ea09d5d6401c1f29eca5ff29d03d3824dba16256a"

 [[package]]
 name = "lance"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arc-swap",
 "arrow",
@@ -4771,7 +4771,7 @@ dependencies = [
 "futures",
 "half",
 "humantime",
- "itertools 0.13.0",
+ "itertools 0.14.0",
 "lance-arrow",
 "lance-core",
 "lance-datafusion",
@@ -4810,8 +4810,8 @@ dependencies = [

 [[package]]
 name = "lance-arrow"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow-array",
 "arrow-buffer",
@@ -4832,7 +4832,7 @@ dependencies = [
 [[package]]
 name = "lance-arrow-scalar"
 version = "58.0.0"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow-array",
 "arrow-buffer",
@@ -4846,7 +4846,7 @@ dependencies = [
 [[package]]
 name = "lance-arrow-stats"
 version = "58.0.0"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow-array",
 "arrow-schema",
@@ -4855,8 +4855,8 @@ dependencies = [

 [[package]]
 name = "lance-bitpacking"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrayref",
 "paste",
@@ -4865,8 +4865,8 @@ dependencies = [

 [[package]]
 name = "lance-core"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow-array",
 "arrow-buffer",
@@ -4878,7 +4878,7 @@ dependencies = [
 "datafusion-common",
 "datafusion-sql",
 "futures",
- "itertools 0.13.0",
+ "itertools 0.14.0",
 "lance-arrow",
 "lance-derive",
 "libc",
@@ -4904,8 +4904,8 @@ dependencies = [

 [[package]]
 name = "lance-datafusion"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow",
 "arrow-array",
@@ -4935,8 +4935,8 @@ dependencies = [

 [[package]]
 name = "lance-datagen"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow",
 "arrow-array",
@@ -4953,8 +4953,8 @@ dependencies = [

 [[package]]
 name = "lance-derive"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "proc-macro2",
 "quote",
@@ -4963,8 +4963,8 @@ dependencies = [

 [[package]]
 name = "lance-encoding"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow-arith",
 "arrow-array",
@@ -4980,7 +4980,7 @@ dependencies = [
 "futures",
 "hex",
 "hyperloglogplus",
- "itertools 0.13.0",
+ "itertools 0.14.0",
 "lance-arrow",
 "lance-bitpacking",
 "lance-core",
@@ -4999,8 +4999,8 @@ dependencies = [

 [[package]]
 name = "lance-file"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow-arith",
 "arrow-array",
@@ -5030,8 +5030,8 @@ dependencies = [

 [[package]]
 name = "lance-index"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arc-swap",
 "arrow",
@@ -5056,7 +5056,7 @@ dependencies = [
 "fst",
 "futures",
 "half",
- "itertools 0.13.0",
+ "itertools 0.14.0",
 "jieba-rs",
 "jsonb",
 "lance-arrow",
@@ -5096,8 +5096,8 @@ dependencies = [

 [[package]]
 name = "lance-io"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow",
 "arrow-arith",
@@ -5138,8 +5138,8 @@ dependencies = [

 [[package]]
 name = "lance-linalg"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow-array",
 "arrow-buffer",
@@ -5155,8 +5155,8 @@ dependencies = [

 [[package]]
 name = "lance-namespace"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow",
 "async-trait",
@@ -5168,8 +5168,8 @@ dependencies = [

 [[package]]
 name = "lance-namespace-impls"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow",
 "arrow-ipc",
@@ -5223,15 +5223,15 @@ dependencies = [

 [[package]]
 name = "lance-select"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow-array",
 "arrow-buffer",
 "arrow-schema",
 "byteorder",
 "bytes",
- "itertools 0.13.0",
+ "itertools 0.14.0",
 "lance-core",
 "roaring",
 "tracing",
@@ -5239,8 +5239,8 @@ dependencies = [

 [[package]]
 name = "lance-table"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow",
 "arrow-array",
@@ -5279,8 +5279,8 @@ dependencies = [

 [[package]]
 name = "lance-testing"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "arrow-array",
 "arrow-schema",
@@ -5293,8 +5293,8 @@ dependencies = [

 [[package]]
 name = "lance-tokenizer"
-version = "9.0.0-beta.2"
-source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.2#23211989de648fefc4454f5eee09ec176f0a465b"
+version = "9.0.0-beta.4"
+source = "git+https://github.com/lance-format/lance.git?tag=v9.0.0-beta.4#8eed3129a8b2c078e5f6f6612cb44fd9dccf4b39"
 dependencies = [
 "icu_segmenter",
 "jieba-rs",
@@ -5307,7 +5307,7 @@ dependencies = [

 [[package]]
 name = "lancedb"
-version = "0.31.0-beta.1"
+version = "0.31.0-beta.2"
 dependencies = [
 "ahash",
 "anyhow",
@@ -5390,7 +5390,7 @@ dependencies = [

 [[package]]
 name = "lancedb-nodejs"
-version = "0.31.0-beta.1"
+version = "0.31.0-beta.2"
 dependencies = [
 "arrow-array",
 "arrow-buffer",
@@ -5415,7 +5415,7 @@ dependencies = [

 [[package]]
 name = "lancedb-python"
-version = "0.34.0-beta.1"
+version = "0.34.0-beta.2"
 dependencies = [
 "arrow",
 "async-trait",
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -13,20 +13,20 @@ categories = ["database-implementations"]
 rust-version = "1.91.0"

 [workspace.dependencies]
-lance = { "version" = "=9.0.0-beta.2", default-features = false, "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-core = { "version" = "=9.0.0-beta.2", "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-datagen = { "version" = "=9.0.0-beta.2", "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-file = { "version" = "=9.0.0-beta.2", "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-io = { "version" = "=9.0.0-beta.2", default-features = false, "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-index = { "version" = "=9.0.0-beta.2", "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-linalg = { "version" = "=9.0.0-beta.2", "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-namespace = { "version" = "=9.0.0-beta.2", "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-namespace-impls = { "version" = "=9.0.0-beta.2", default-features = false, "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-table = { "version" = "=9.0.0-beta.2", "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-testing = { "version" = "=9.0.0-beta.2", "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-datafusion = { "version" = "=9.0.0-beta.2", "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-encoding = { "version" = "=9.0.0-beta.2", "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
-lance-arrow = { "version" = "=9.0.0-beta.2", "tag" = "v9.0.0-beta.2", "git" = "https://github.com/lance-format/lance.git" }
+lance = { "version" = "=9.0.0-beta.4", default-features = false, "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-core = { "version" = "=9.0.0-beta.4", "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-datagen = { "version" = "=9.0.0-beta.4", "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-file = { "version" = "=9.0.0-beta.4", "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-io = { "version" = "=9.0.0-beta.4", default-features = false, "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-index = { "version" = "=9.0.0-beta.4", "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-linalg = { "version" = "=9.0.0-beta.4", "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-namespace = { "version" = "=9.0.0-beta.4", "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-namespace-impls = { "version" = "=9.0.0-beta.4", default-features = false, "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-table = { "version" = "=9.0.0-beta.4", "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-testing = { "version" = "=9.0.0-beta.4", "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-datafusion = { "version" = "=9.0.0-beta.4", "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-encoding = { "version" = "=9.0.0-beta.4", "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
+lance-arrow = { "version" = "=9.0.0-beta.4", "tag" = "v9.0.0-beta.4", "git" = "https://github.com/lance-format/lance.git" }
 ahash = "0.8"
 # Note that this one does not include pyarrow
 arrow = { version = "58.0.0", optional = false }
--- a/docs/src/java/java.md
+++ b/docs/src/java/java.md
@@ -14,7 +14,7 @@ Add the following dependency to your `pom.xml`:
 <dependency>
    <groupId>com.lancedb</groupId>
    <artifactId>lancedb-core</artifactId>
-    <version>0.31.0-beta.1</version>
+    <version>0.31.0-beta.2</version>
 </dependency>
 ```

--- a/java/lancedb-core/pom.xml
+++ b/java/lancedb-core/pom.xml
@@ -8,7 +8,7 @@
    <parent>
      <groupId>com.lancedb</groupId>
      <artifactId>lancedb-parent</artifactId>
-      <version>0.31.0-beta.1</version>
+      <version>0.31.0-beta.2</version>
      <relativePath>../pom.xml</relativePath>
    </parent>

--- a/java/pom.xml
+++ b/java/pom.xml
@@ -6,7 +6,7 @@

    <groupId>com.lancedb</groupId>
    <artifactId>lancedb-parent</artifactId>
-    <version>0.31.0-beta.1</version>
+    <version>0.31.0-beta.2</version>
    <packaging>pom</packaging>
    <name>${project.artifactId}</name>
    <description>LanceDB Java SDK Parent POM</description>
@@ -28,7 +28,7 @@
    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <arrow.version>15.0.0</arrow.version>
-        <lance-core.version>9.0.0-beta.2</lance-core.version>
+        <lance-core.version>9.0.0-beta.4</lance-core.version>
        <spotless.skip>false</spotless.skip>
        <spotless.version>2.30.0</spotless.version>
        <spotless.java.googlejavaformat.version>1.7</spotless.java.googlejavaformat.version>
--- a/nodejs/Cargo.toml
+++ b/nodejs/Cargo.toml
@@ -1,7 +1,7 @@
 [package]
 name = "lancedb-nodejs"
 edition.workspace = true
-version = "0.31.0-beta.1"
+version = "0.31.0-beta.2"
 publish = false
 license.workspace = true
 description.workspace = true
--- a/nodejs/npm/darwin-arm64/package.json
+++ b/nodejs/npm/darwin-arm64/package.json
@@ -1,6 +1,6 @@
 {
 	"name": "@lancedb/lancedb-darwin-arm64",
-	"version": "0.31.0-beta.1",
+	"version": "0.31.0-beta.2",
 	"os": ["darwin"],
 	"cpu": ["arm64"],
 	"main": "lancedb.darwin-arm64.node",
--- a/nodejs/npm/linux-arm64-gnu/package.json
+++ b/nodejs/npm/linux-arm64-gnu/package.json
@@ -1,6 +1,6 @@
 {
 	"name": "@lancedb/lancedb-linux-arm64-gnu",
-	"version": "0.31.0-beta.1",
+	"version": "0.31.0-beta.2",
 	"os": ["linux"],
 	"cpu": ["arm64"],
 	"main": "lancedb.linux-arm64-gnu.node",
--- a/nodejs/npm/linux-arm64-musl/package.json
+++ b/nodejs/npm/linux-arm64-musl/package.json
@@ -1,6 +1,6 @@
 {
 	"name": "@lancedb/lancedb-linux-arm64-musl",
-	"version": "0.31.0-beta.1",
+	"version": "0.31.0-beta.2",
 	"os": ["linux"],
 	"cpu": ["arm64"],
 	"main": "lancedb.linux-arm64-musl.node",
--- a/nodejs/npm/linux-x64-gnu/package.json
+++ b/nodejs/npm/linux-x64-gnu/package.json
@@ -1,6 +1,6 @@
 {
 	"name": "@lancedb/lancedb-linux-x64-gnu",
-	"version": "0.31.0-beta.1",
+	"version": "0.31.0-beta.2",
 	"os": ["linux"],
 	"cpu": ["x64"],
 	"main": "lancedb.linux-x64-gnu.node",
--- a/nodejs/npm/linux-x64-musl/package.json
+++ b/nodejs/npm/linux-x64-musl/package.json
@@ -1,6 +1,6 @@
 {
 	"name": "@lancedb/lancedb-linux-x64-musl",
-	"version": "0.31.0-beta.1",
+	"version": "0.31.0-beta.2",
 	"os": ["linux"],
 	"cpu": ["x64"],
 	"main": "lancedb.linux-x64-musl.node",
--- a/nodejs/npm/win32-arm64-msvc/package.json
+++ b/nodejs/npm/win32-arm64-msvc/package.json
@@ -1,6 +1,6 @@
 {
  "name": "@lancedb/lancedb-win32-arm64-msvc",
-  "version": "0.31.0-beta.1",
+  "version": "0.31.0-beta.2",
  "os": [
    "win32"
  ],
--- a/nodejs/npm/win32-x64-msvc/package.json
+++ b/nodejs/npm/win32-x64-msvc/package.json
@@ -1,6 +1,6 @@
 {
 	"name": "@lancedb/lancedb-win32-x64-msvc",
-	"version": "0.31.0-beta.1",
+	"version": "0.31.0-beta.2",
 	"os": ["win32"],
 	"cpu": ["x64"],
 	"main": "lancedb.win32-x64-msvc.node",
--- a/nodejs/package-lock.json
+++ b/nodejs/package-lock.json
@@ -1,12 +1,12 @@
 {
  "name": "@lancedb/lancedb",
-  "version": "0.31.0-beta.1",
+  "version": "0.31.0-beta.2",
  "lockfileVersion": 3,
  "requires": true,
  "packages": {
    "": {
      "name": "@lancedb/lancedb",
-      "version": "0.31.0-beta.1",
+      "version": "0.31.0-beta.2",
      "cpu": [
        "x64",
        "arm64"
--- a/nodejs/package.json
+++ b/nodejs/package.json
@@ -11,7 +11,7 @@
    "ann"
  ],
  "private": false,
-  "version": "0.31.0-beta.1",
+  "version": "0.31.0-beta.2",
  "main": "dist/index.js",
  "exports": {
    ".": "./dist/index.js",
--- a/python/python/lancedb/embeddings/colpali.py
+++ b/python/python/lancedb/embeddings/colpali.py
@@ -81,6 +81,7 @@ class ColPaliEmbeddings(EmbeddingFunction):
            warnings.warn(
                "use_token_pooling is deprecated, use pooling_strategy=None instead",
                DeprecationWarning,
+                stacklevel=2,
            )
            self.pooling_strategy = None

--- a/python/python/lancedb/remote/db.py
+++ b/python/python/lancedb/remote/db.py
@@ -124,6 +124,7 @@ class RemoteDBConnection(DBConnection):
                "request_thread_pool is no longer used and will be removed in "
                "a future release.",
                DeprecationWarning,
+                stacklevel=2,
            )

        if connection_timeout is not None:
@@ -132,6 +133,7 @@ class RemoteDBConnection(DBConnection):
                "release. Please use client_config.timeout_config.connect_timeout "
                "instead.",
                DeprecationWarning,
+                stacklevel=2,
            )
            client_config.timeout_config.connect_timeout = timedelta(
                seconds=connection_timeout
@@ -142,6 +144,7 @@ class RemoteDBConnection(DBConnection):
                "read_timeout is deprecated and will be removed in a future release. "
                "Please use client_config.timeout_config.read_timeout instead.",
                DeprecationWarning,
+                stacklevel=2,
            )
            client_config.timeout_config.read_timeout = timedelta(seconds=read_timeout)

--- a/python/python/lancedb/remote/table.py
+++ b/python/python/lancedb/remote/table.py
@@ -845,7 +845,8 @@ class RemoteTable(Table):
        """
        warnings.warn(
            "cleanup_old_versions() is a no-op on LanceDB Cloud. "
-            "Tables are automatically cleaned up and optimized."
+            "Tables are automatically cleaned up and optimized.",
+            stacklevel=2,
        )
        pass

@@ -857,7 +858,8 @@ class RemoteTable(Table):
        """
        warnings.warn(
            "compact_files() is a no-op on LanceDB Cloud. "
-            "Tables are automatically compacted and optimized."
+            "Tables are automatically compacted and optimized.",
+            stacklevel=2,
        )
        pass

@@ -874,7 +876,8 @@ class RemoteTable(Table):
        """
        warnings.warn(
            "optimize() is a no-op on LanceDB Cloud. "
-            "Indices are optimized automatically."
+            "Indices are optimized automatically.",
+            stacklevel=2,
        )
        pass

--- a/python/python/lancedb/table.py
+++ b/python/python/lancedb/table.py
@@ -3409,18 +3409,20 @@ class LanceTable(Table):

        if data_storage_version is not None:
            warnings.warn(
-                "setting data_storage_version directly on create_table is deprecated. ",
+                "setting data_storage_version directly on create_table is deprecated. "
                "Use database_options instead.",
                DeprecationWarning,
+                stacklevel=2,
            )
            if storage_options is None:
                storage_options = {}
            storage_options["new_table_data_storage_version"] = data_storage_version
        if enable_v2_manifest_paths is not None:
            warnings.warn(
-                "setting enable_v2_manifest_paths directly on create_table is ",
+                "setting enable_v2_manifest_paths directly on create_table is "
                "deprecated. Use database_options instead.",
                DeprecationWarning,
+                stacklevel=2,
            )
            if storage_options is None:
                storage_options = {}
@@ -5662,6 +5664,7 @@ class AsyncTable:
                "The 'retrain' parameter is deprecated and will be removed in a "
                "future version.",
                DeprecationWarning,
+                stacklevel=2,
            )

        return await self._inner.optimize(
--- a/rust/lancedb/Cargo.toml
+++ b/rust/lancedb/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "lancedb"
-version = "0.31.0-beta.1"
+version = "0.31.0-beta.2"
 edition.workspace = true
 description = "LanceDB: A serverless, low-latency vector database for AI applications"
 license.workspace = true