feat: copy delta layer prefix or "truncate" (#7228)

For "timeline ancestor merge" or "timeline detach," we need to "cut"
delta layers at particular LSN. The name "truncate" is not used as it
would imply that a layer file changes, instead of what happens: we copy
keys with Lsn less than a "cut point".

Cc: #6994 

Add the "copy delta layer prefix" operation to DeltaLayerInner, re-using
some of the vectored read internals. The code is `cfg(test)` until it
will be used later with a more complete integration test.
This commit is contained in:
Joonas Koivunen
2024-04-18 10:43:04 +03:00
committed by GitHub
parent 5191f6ef0e
commit 8d0f701767
5 changed files with 632 additions and 19 deletions

View File

@@ -33,6 +33,52 @@ impl Value {
}
}
#[cfg(test)]
#[derive(Debug, PartialEq)]
pub(crate) enum InvalidInput {
TooShortValue,
TooShortPostgresRecord,
}
/// We could have a ValueRef where everything is `serde(borrow)`. Before implementing that, lets
/// use this type for querying if a slice looks some particular way.
#[cfg(test)]
pub(crate) struct ValueBytes;
#[cfg(test)]
impl ValueBytes {
pub(crate) fn will_init(raw: &[u8]) -> Result<bool, InvalidInput> {
if raw.len() < 12 {
return Err(InvalidInput::TooShortValue);
}
let value_discriminator = &raw[0..4];
if value_discriminator == [0, 0, 0, 0] {
// Value::Image always initializes
return Ok(true);
}
if value_discriminator != [0, 0, 0, 1] {
// not a Value::WalRecord(..)
return Ok(false);
}
let walrecord_discriminator = &raw[4..8];
if walrecord_discriminator != [0, 0, 0, 0] {
// only NeonWalRecord::Postgres can have will_init
return Ok(false);
}
if raw.len() < 17 {
return Err(InvalidInput::TooShortPostgresRecord);
}
Ok(raw[8] == 1)
}
}
#[cfg(test)]
mod test {
use super::*;
@@ -70,6 +116,8 @@ mod test {
];
roundtrip!(image, expected);
assert!(ValueBytes::will_init(&expected).unwrap());
}
#[test]
@@ -93,6 +141,96 @@ mod test {
];
roundtrip!(rec, expected);
assert!(ValueBytes::will_init(&expected).unwrap());
}
#[test]
fn bytes_inspection_too_short_image() {
let rec = Value::Image(Bytes::from_static(b""));
#[rustfmt::skip]
let expected = [
// top level discriminator of 4 bytes
0x00, 0x00, 0x00, 0x00,
// 8 byte length
0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00,
];
roundtrip!(rec, expected);
assert!(ValueBytes::will_init(&expected).unwrap());
assert_eq!(expected.len(), 12);
for len in 0..12 {
assert_eq!(
ValueBytes::will_init(&expected[..len]).unwrap_err(),
InvalidInput::TooShortValue
);
}
}
#[test]
fn bytes_inspection_too_short_postgres_record() {
let rec = NeonWalRecord::Postgres {
will_init: false,
rec: Bytes::from_static(b""),
};
let rec = Value::WalRecord(rec);
#[rustfmt::skip]
let expected = [
// flattened discriminator of total 8 bytes
0x00, 0x00, 0x00, 0x01,
0x00, 0x00, 0x00, 0x00,
// will_init
0x00,
// 8 byte length
0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00,
];
roundtrip!(rec, expected);
assert!(!ValueBytes::will_init(&expected).unwrap());
assert_eq!(expected.len(), 17);
for len in 12..17 {
assert_eq!(
ValueBytes::will_init(&expected[..len]).unwrap_err(),
InvalidInput::TooShortPostgresRecord
)
}
for len in 0..12 {
assert_eq!(
ValueBytes::will_init(&expected[..len]).unwrap_err(),
InvalidInput::TooShortValue
)
}
}
#[test]
fn clear_visibility_map_flags_example() {
let rec = NeonWalRecord::ClearVisibilityMapFlags {
new_heap_blkno: Some(0x11),
old_heap_blkno: None,
flags: 0x03,
};
let rec = Value::WalRecord(rec);
#[rustfmt::skip]
let expected = [
// discriminators
0x00, 0x00, 0x00, 0x01,
0x00, 0x00, 0x00, 0x01,
// Some == 1 followed by 4 bytes
0x01, 0x00, 0x00, 0x00, 0x11,
// None == 0
0x00,
// flags
0x03
];
roundtrip!(rec, expected);
assert!(!ValueBytes::will_init(&expected).unwrap());
}
}

View File

@@ -20,8 +20,8 @@
//! 000000067F000032BE0000400000000020B6-000000067F000032BE0000400000000030B6__000000578C6B29-0000000057A50051
//! ```
//!
//! Every delta file consists of three parts: "summary", "index", and
//! "values". The summary is a fixed size header at the beginning of the file,
//! Every delta file consists of three parts: "summary", "values", and
//! "index". The summary is a fixed size header at the beginning of the file,
//! and it contains basic information about the layer, and offsets to the other
//! parts. The "index" is a B-tree, mapping from Key and LSN to an offset in the
//! "values" part. The actual page images and WAL records are stored in the
@@ -863,7 +863,7 @@ impl DeltaLayerInner {
.into(),
);
let data_end_offset = self.index_start_blk as u64 * PAGE_SZ as u64;
let data_end_offset = self.index_start_offset();
let reads = Self::plan_reads(
keyspace,
@@ -1103,11 +1103,195 @@ impl DeltaLayerInner {
if let Some(last) = all_keys.last_mut() {
// Last key occupies all space till end of value storage,
// which corresponds to beginning of the index
last.size = self.index_start_blk as u64 * PAGE_SZ as u64 - last.size;
last.size = self.index_start_offset() - last.size;
}
Ok(all_keys)
}
/// Using the given writer, write out a truncated version, where LSNs higher than the
/// truncate_at are missing.
#[cfg(test)]
pub(super) async fn copy_prefix(
&self,
writer: &mut DeltaLayerWriter,
truncate_at: Lsn,
ctx: &RequestContext,
) -> anyhow::Result<()> {
use crate::tenant::vectored_blob_io::{
BlobMeta, VectoredReadBuilder, VectoredReadExtended,
};
use futures::stream::TryStreamExt;
#[derive(Debug)]
enum Item {
Actual(Key, Lsn, BlobRef),
Sentinel,
}
impl From<Item> for Option<(Key, Lsn, BlobRef)> {
fn from(value: Item) -> Self {
match value {
Item::Actual(key, lsn, blob) => Some((key, lsn, blob)),
Item::Sentinel => None,
}
}
}
impl Item {
fn offset(&self) -> Option<BlobRef> {
match self {
Item::Actual(_, _, blob) => Some(*blob),
Item::Sentinel => None,
}
}
fn is_last(&self) -> bool {
matches!(self, Item::Sentinel)
}
}
let block_reader = FileBlockReader::new(&self.file, self.file_id);
let tree_reader = DiskBtreeReader::<_, DELTA_KEY_SIZE>::new(
self.index_start_blk,
self.index_root_blk,
block_reader,
);
let stream = self.stream_index_forwards(&tree_reader, &[0u8; DELTA_KEY_SIZE], ctx);
let stream = stream.map_ok(|(key, lsn, pos)| Item::Actual(key, lsn, pos));
// put in a sentinel value for getting the end offset for last item, and not having to
// repeat the whole read part
let stream = stream.chain(futures::stream::once(futures::future::ready(Ok(
Item::Sentinel,
))));
let mut stream = std::pin::pin!(stream);
let mut prev: Option<(Key, Lsn, BlobRef)> = None;
let mut read_builder: Option<VectoredReadBuilder> = None;
let max_read_size = self
.max_vectored_read_bytes
.map(|x| x.0.get())
.unwrap_or(8192);
let mut buffer = Some(BytesMut::with_capacity(max_read_size));
// FIXME: buffering of DeltaLayerWriter
let mut per_blob_copy = Vec::new();
while let Some(item) = stream.try_next().await? {
tracing::debug!(?item, "popped");
let offset = item
.offset()
.unwrap_or(BlobRef::new(self.index_start_offset(), false));
let actionable = if let Some((key, lsn, start_offset)) = prev.take() {
let end_offset = offset;
Some((BlobMeta { key, lsn }, start_offset..end_offset))
} else {
None
};
let is_last = item.is_last();
prev = Option::from(item);
let actionable = actionable.filter(|x| x.0.lsn < truncate_at);
let builder = if let Some((meta, offsets)) = actionable {
// extend or create a new builder
if read_builder
.as_mut()
.map(|x| x.extend(offsets.start.pos(), offsets.end.pos(), meta))
.unwrap_or(VectoredReadExtended::No)
== VectoredReadExtended::Yes
{
None
} else {
read_builder.replace(VectoredReadBuilder::new(
offsets.start.pos(),
offsets.end.pos(),
meta,
max_read_size,
))
}
} else {
// nothing to do, except perhaps flush any existing for the last element
None
};
// flush the possible older builder and also the new one if the item was the last one
let builders = builder.into_iter();
let builders = if is_last {
builders.chain(read_builder.take())
} else {
builders.chain(None)
};
for builder in builders {
let read = builder.build();
let reader = VectoredBlobReader::new(&self.file);
let mut buf = buffer.take().unwrap();
buf.clear();
buf.reserve(read.size());
let res = reader.read_blobs(&read, buf).await?;
for blob in res.blobs {
let key = blob.meta.key;
let lsn = blob.meta.lsn;
let data = &res.buf[blob.start..blob.end];
#[cfg(debug_assertions)]
Value::des(data)
.with_context(|| {
format!(
"blob failed to deserialize for {}@{}, {}..{}: {:?}",
blob.meta.key,
blob.meta.lsn,
blob.start,
blob.end,
utils::Hex(data)
)
})
.unwrap();
// is it an image or will_init walrecord?
// FIXME: this could be handled by threading the BlobRef to the
// VectoredReadBuilder
let will_init = crate::repository::ValueBytes::will_init(data)
.inspect_err(|_e| {
#[cfg(feature = "testing")]
tracing::error!(data=?utils::Hex(data), err=?_e, "failed to parse will_init out of serialized value");
})
.unwrap_or(false);
per_blob_copy.clear();
per_blob_copy.extend_from_slice(data);
let (tmp, res) = writer
.put_value_bytes(key, lsn, std::mem::take(&mut per_blob_copy), will_init)
.await;
per_blob_copy = tmp;
res?;
}
buffer = Some(res.buf);
}
}
assert!(
read_builder.is_none(),
"with the sentinel above loop should had handled all"
);
Ok(())
}
pub(super) async fn dump(&self, ctx: &RequestContext) -> anyhow::Result<()> {
println!(
"index_start_blk: {}, root {}",
@@ -1177,6 +1361,44 @@ impl DeltaLayerInner {
Ok(())
}
#[cfg(test)]
fn stream_index_forwards<'a, R>(
&'a self,
reader: &'a DiskBtreeReader<R, DELTA_KEY_SIZE>,
start: &'a [u8; DELTA_KEY_SIZE],
ctx: &'a RequestContext,
) -> impl futures::stream::Stream<
Item = Result<(Key, Lsn, BlobRef), crate::tenant::disk_btree::DiskBtreeError>,
> + 'a
where
R: BlockReader,
{
use futures::stream::TryStreamExt;
let stream = reader.get_stream_from(start, ctx);
stream.map_ok(|(key, value)| {
let key = DeltaKey::from_slice(&key);
let (key, lsn) = (key.key(), key.lsn());
let offset = BlobRef(value);
(key, lsn, offset)
})
}
/// The file offset to the first block of index.
///
/// The file structure is summary, values, and index. We often need this for the size of last blob.
fn index_start_offset(&self) -> u64 {
let offset = self.index_start_blk as u64 * PAGE_SZ as u64;
let bref = BlobRef(offset);
tracing::debug!(
index_start_blk = self.index_start_blk,
offset,
pos = bref.pos(),
"index_start_offset"
);
offset
}
}
/// A set of data associated with a delta layer key and its value
@@ -1538,7 +1760,7 @@ mod test {
let resident = writer.finish(entries_meta.key_range.end, &timeline).await?;
let inner = resident.get_inner_delta(&ctx).await?;
let inner = resident.as_delta(&ctx).await?;
let file_size = inner.file.metadata().await?.len();
tracing::info!(
@@ -1594,4 +1816,217 @@ mod test {
Ok(())
}
#[tokio::test]
async fn copy_delta_prefix_smoke() {
use crate::walrecord::NeonWalRecord;
use bytes::Bytes;
let h = crate::tenant::harness::TenantHarness::create("truncate_delta_smoke").unwrap();
let (tenant, ctx) = h.load().await;
let ctx = &ctx;
let timeline = tenant
.create_test_timeline(TimelineId::generate(), Lsn(0x10), 14, ctx)
.await
.unwrap();
let initdb_layer = timeline
.layers
.read()
.await
.likely_resident_layers()
.next()
.unwrap();
{
let mut writer = timeline.writer().await;
let data = [
(0x20, 12, Value::Image(Bytes::from_static(b"foobar"))),
(
0x30,
12,
Value::WalRecord(NeonWalRecord::Postgres {
will_init: false,
rec: Bytes::from_static(b"1"),
}),
),
(
0x40,
12,
Value::WalRecord(NeonWalRecord::Postgres {
will_init: true,
rec: Bytes::from_static(b"2"),
}),
),
// build an oversized value so we cannot extend and existing read over
// this
(
0x50,
12,
Value::WalRecord(NeonWalRecord::Postgres {
will_init: true,
rec: {
let mut buf =
vec![0u8; tenant.conf.max_vectored_read_bytes.0.get() + 1024];
buf.iter_mut()
.enumerate()
.for_each(|(i, slot)| *slot = (i % 256) as u8);
Bytes::from(buf)
},
}),
),
// because the oversized read cannot be extended further, we are sure to exercise the
// builder created on the last round with this:
(
0x60,
12,
Value::WalRecord(NeonWalRecord::Postgres {
will_init: true,
rec: Bytes::from_static(b"3"),
}),
),
(
0x60,
9,
Value::Image(Bytes::from_static(b"something for a different key")),
),
];
let mut last_lsn = None;
for (lsn, key, value) in data {
let key = Key::from_i128(key);
writer.put(key, Lsn(lsn), &value, ctx).await.unwrap();
last_lsn = Some(lsn);
}
writer.finish_write(Lsn(last_lsn.unwrap()));
}
timeline.freeze_and_flush().await.unwrap();
let new_layer = timeline
.layers
.read()
.await
.likely_resident_layers()
.find(|x| x != &initdb_layer)
.unwrap();
// create a copy for the timeline, so we don't overwrite the file
let branch = tenant
.branch_timeline_test(&timeline, TimelineId::generate(), None, ctx)
.await
.unwrap();
assert_eq!(branch.get_ancestor_lsn(), Lsn(0x60));
// truncating at 0x61 gives us a full copy, otherwise just go backwards until there's just
// a single key
for truncate_at in [0x61, 0x51, 0x41, 0x31, 0x21] {
let truncate_at = Lsn(truncate_at);
let mut writer = DeltaLayerWriter::new(
tenant.conf,
branch.timeline_id,
tenant.tenant_shard_id,
Key::MIN,
Lsn(0x11)..truncate_at,
)
.await
.unwrap();
let new_layer = new_layer.download_and_keep_resident().await.unwrap();
new_layer
.copy_delta_prefix(&mut writer, truncate_at, ctx)
.await
.unwrap();
let copied_layer = writer.finish(Key::MAX, &branch).await.unwrap();
copied_layer.as_delta(ctx).await.unwrap();
assert_keys_and_values_eq(
new_layer.as_delta(ctx).await.unwrap(),
copied_layer.as_delta(ctx).await.unwrap(),
truncate_at,
ctx,
)
.await;
}
}
async fn assert_keys_and_values_eq(
source: &DeltaLayerInner,
truncated: &DeltaLayerInner,
truncated_at: Lsn,
ctx: &RequestContext,
) {
use futures::future::ready;
use futures::stream::TryStreamExt;
let start_key = [0u8; DELTA_KEY_SIZE];
let source_reader = FileBlockReader::new(&source.file, source.file_id);
let source_tree = DiskBtreeReader::<_, DELTA_KEY_SIZE>::new(
source.index_start_blk,
source.index_root_blk,
&source_reader,
);
let source_stream = source.stream_index_forwards(&source_tree, &start_key, ctx);
let source_stream = source_stream.filter(|res| match res {
Ok((_, lsn, _)) => ready(lsn < &truncated_at),
_ => ready(true),
});
let mut source_stream = std::pin::pin!(source_stream);
let truncated_reader = FileBlockReader::new(&truncated.file, truncated.file_id);
let truncated_tree = DiskBtreeReader::<_, DELTA_KEY_SIZE>::new(
truncated.index_start_blk,
truncated.index_root_blk,
&truncated_reader,
);
let truncated_stream = truncated.stream_index_forwards(&truncated_tree, &start_key, ctx);
let mut truncated_stream = std::pin::pin!(truncated_stream);
let mut scratch_left = Vec::new();
let mut scratch_right = Vec::new();
loop {
let (src, truncated) = (source_stream.try_next(), truncated_stream.try_next());
let (src, truncated) = tokio::try_join!(src, truncated).unwrap();
if src.is_none() {
assert!(truncated.is_none());
break;
}
let (src, truncated) = (src.unwrap(), truncated.unwrap());
// because we've filtered the source with Lsn, we should always have the same keys from both.
assert_eq!(src.0, truncated.0);
assert_eq!(src.1, truncated.1);
// if this is needed for something else, just drop this assert.
assert!(
src.2.pos() >= truncated.2.pos(),
"value position should not go backwards {} vs. {}",
src.2.pos(),
truncated.2.pos()
);
scratch_left.clear();
let src_cursor = source_reader.block_cursor();
let left = src_cursor.read_blob_into_buf(src.2.pos(), &mut scratch_left, ctx);
scratch_right.clear();
let trunc_cursor = truncated_reader.block_cursor();
let right = trunc_cursor.read_blob_into_buf(truncated.2.pos(), &mut scratch_right, ctx);
tokio::try_join!(left, right).unwrap();
assert_eq!(utils::Hex(&scratch_left), utils::Hex(&scratch_right));
}
}
}

View File

@@ -116,6 +116,12 @@ impl AsLayerDesc for Layer {
}
}
impl PartialEq for Layer {
fn eq(&self, other: &Self) -> bool {
Arc::as_ptr(&self.0) == Arc::as_ptr(&other.0)
}
}
impl Layer {
/// Creates a layer value for a file we know to not be resident.
pub(crate) fn for_evicted(
@@ -1752,6 +1758,28 @@ impl ResidentLayer {
}
}
/// FIXME: truncate is bad name because we are not truncating anything, but copying the
/// filtered parts.
#[cfg(test)]
pub(super) async fn copy_delta_prefix(
&self,
writer: &mut super::delta_layer::DeltaLayerWriter,
truncate_at: Lsn,
ctx: &RequestContext,
) -> anyhow::Result<()> {
use LayerKind::*;
let owner = &self.owner.0;
match self.downloaded.get(owner, ctx).await? {
Delta(ref d) => d
.copy_prefix(writer, truncate_at, ctx)
.await
.with_context(|| format!("truncate {self}")),
Image(_) => anyhow::bail!(format!("cannot truncate image layer {self}")),
}
}
pub(crate) fn local_path(&self) -> &Utf8Path {
&self.owner.0.path
}
@@ -1761,14 +1789,14 @@ impl ResidentLayer {
}
#[cfg(test)]
pub(crate) async fn get_inner_delta<'a>(
&'a self,
pub(crate) async fn as_delta(
&self,
ctx: &RequestContext,
) -> anyhow::Result<&'a delta_layer::DeltaLayerInner> {
let owner = &self.owner.0;
match self.downloaded.get(owner, ctx).await? {
LayerKind::Delta(d) => Ok(d),
LayerKind::Image(_) => Err(anyhow::anyhow!("Expected a delta layer")),
) -> anyhow::Result<&delta_layer::DeltaLayerInner> {
use LayerKind::*;
match self.downloaded.get(&self.owner.0, ctx).await? {
Delta(ref d) => Ok(d),
Image(_) => Err(anyhow::anyhow!("image layer")),
}
}
}

View File

@@ -61,18 +61,18 @@ pub struct VectoredRead {
}
impl VectoredRead {
pub fn size(&self) -> usize {
pub(crate) fn size(&self) -> usize {
(self.end - self.start) as usize
}
}
#[derive(Eq, PartialEq)]
enum VectoredReadExtended {
pub(crate) enum VectoredReadExtended {
Yes,
No,
}
struct VectoredReadBuilder {
pub(crate) struct VectoredReadBuilder {
start: u64,
end: u64,
blobs_at: VecMap<u64, BlobMeta>,
@@ -80,7 +80,17 @@ struct VectoredReadBuilder {
}
impl VectoredReadBuilder {
fn new(start_offset: u64, end_offset: u64, meta: BlobMeta, max_read_size: usize) -> Self {
/// Start building a new vectored read.
///
/// Note that by design, this does not check against reading more than `max_read_size` to
/// support reading larger blobs than the configuration value. The builder will be single use
/// however after that.
pub(crate) fn new(
start_offset: u64,
end_offset: u64,
meta: BlobMeta,
max_read_size: usize,
) -> Self {
let mut blobs_at = VecMap::default();
blobs_at
.append(start_offset, meta)
@@ -97,7 +107,8 @@ impl VectoredReadBuilder {
/// Attempt to extend the current read with a new blob if the start
/// offset matches with the current end of the vectored read
/// and the resuting size is below the max read size
fn extend(&mut self, start: u64, end: u64, meta: BlobMeta) -> VectoredReadExtended {
pub(crate) fn extend(&mut self, start: u64, end: u64, meta: BlobMeta) -> VectoredReadExtended {
tracing::trace!(start, end, "trying to extend");
let size = (end - start) as usize;
if self.end == start && self.size() + size <= self.max_read_size {
self.end = end;
@@ -111,11 +122,11 @@ impl VectoredReadBuilder {
VectoredReadExtended::No
}
fn size(&self) -> usize {
pub(crate) fn size(&self) -> usize {
(self.end - self.start) as usize
}
fn build(self) -> VectoredRead {
pub(crate) fn build(self) -> VectoredRead {
VectoredRead {
start: self.start,
end: self.end,

View File

@@ -55,6 +55,7 @@ impl NeonWalRecord {
/// Does replaying this WAL record initialize the page from scratch, or does
/// it need to be applied over the previous image of the page?
pub fn will_init(&self) -> bool {
// If you change this function, you'll also need to change ValueBytes::will_init
match self {
NeonWalRecord::Postgres { will_init, rec: _ } => *will_init,