Performance test for pgvector HNSW index build and queries (#7873)

## Problem

We want to regularly verify the performance of pgvector HNSW parallel
index builds and parallel similarity search using HNSW indexes.
The first release that considerably improved the index-build parallelism
was pgvector 0.7.0 and we want to make sure that we do not regress by
our neon compute VM settings (swap, memory over commit, pg conf etc.)

## Summary of changes

Prepare a Neon project with 1 million openAI vector embeddings (vector
size 1536).
Run HNSW indexing operations in the regression test for the various
distance metrics.
Run similarity queries using pgbench with 100 concurrent clients.

I have also added the relevant metrics to the grafana dashboards pgbench
and olape

---------

Co-authored-by: Alexander Bayandin <alexander@neon.tech>
This commit is contained in:
Peter Bendel
2024-05-28 13:05:33 +02:00
committed by GitHub
parent 4a0ce9512b
commit fabeff822f
10 changed files with 395 additions and 3 deletions

View File

@@ -38,6 +38,11 @@ on:
description: 'AWS-RDS and AWS-AURORA normally only run on Saturday. Set this to true to run them on every workflow_dispatch'
required: false
default: false
run_only_pgvector_tests:
type: boolean
description: 'Run pgvector tests but no other tests. If not set, all tests including pgvector tests will be run'
required: false
default: false
defaults:
run:
@@ -50,6 +55,7 @@ concurrency:
jobs:
bench:
if: ${{ github.event.inputs.run_only_pgvector_tests == 'false' || github.event.inputs.run_only_pgvector_tests == null }}
env:
TEST_PG_BENCH_DURATIONS_MATRIX: "300"
TEST_PG_BENCH_SCALES_MATRIX: "10,100"
@@ -120,6 +126,7 @@ jobs:
SLACK_BOT_TOKEN: ${{ secrets.SLACK_BOT_TOKEN }}
generate-matrices:
if: ${{ github.event.inputs.run_only_pgvector_tests == 'false' || github.event.inputs.run_only_pgvector_tests == null }}
# Create matrices for the benchmarking jobs, so we run benchmarks on rds only once a week (on Saturday)
#
# Available platforms:
@@ -197,6 +204,7 @@ jobs:
echo "matrix=$(echo "$matrix" | jq --compact-output '.')" >> $GITHUB_OUTPUT
pgbench-compare:
if: ${{ github.event.inputs.run_only_pgvector_tests == 'false' || github.event.inputs.run_only_pgvector_tests == null }}
needs: [ generate-matrices ]
strategy:
@@ -343,6 +351,92 @@ jobs:
env:
SLACK_BOT_TOKEN: ${{ secrets.SLACK_BOT_TOKEN }}
pgbench-pgvector:
env:
TEST_PG_BENCH_DURATIONS_MATRIX: "15m"
TEST_PG_BENCH_SCALES_MATRIX: "1"
POSTGRES_DISTRIB_DIR: /tmp/neon/pg_install
DEFAULT_PG_VERSION: 16
TEST_OUTPUT: /tmp/test_output
BUILD_TYPE: remote
SAVE_PERF_REPORT: ${{ github.event.inputs.save_perf_report || ( github.ref_name == 'main' ) }}
PLATFORM: "neon-captest-pgvector"
runs-on: [ self-hosted, us-east-2, x64 ]
container:
image: 369495373322.dkr.ecr.eu-central-1.amazonaws.com/build-tools:pinned
options: --init
steps:
- uses: actions/checkout@v4
- name: Download Neon artifact
uses: ./.github/actions/download
with:
name: neon-${{ runner.os }}-release-artifact
path: /tmp/neon/
prefix: latest
- name: Add Postgres binaries to PATH
run: |
${POSTGRES_DISTRIB_DIR}/v${DEFAULT_PG_VERSION}/bin/pgbench --version
echo "${POSTGRES_DISTRIB_DIR}/v${DEFAULT_PG_VERSION}/bin" >> $GITHUB_PATH
- name: Set up Connection String
id: set-up-connstr
run: |
CONNSTR=${{ secrets.BENCHMARK_PGVECTOR_CONNSTR }}
echo "connstr=${CONNSTR}" >> $GITHUB_OUTPUT
QUERIES=("SELECT version()")
QUERIES+=("SHOW neon.tenant_id")
QUERIES+=("SHOW neon.timeline_id")
for q in "${QUERIES[@]}"; do
psql ${CONNSTR} -c "${q}"
done
- name: Benchmark pgvector hnsw indexing
uses: ./.github/actions/run-python-test-set
with:
build_type: ${{ env.BUILD_TYPE }}
test_selection: performance/test_perf_olap.py
run_in_parallel: false
save_perf_report: ${{ env.SAVE_PERF_REPORT }}
extra_params: -m remote_cluster --timeout 21600 -k test_pgvector_indexing
env:
VIP_VAP_ACCESS_TOKEN: "${{ secrets.VIP_VAP_ACCESS_TOKEN }}"
PERF_TEST_RESULT_CONNSTR: "${{ secrets.PERF_TEST_RESULT_CONNSTR }}"
BENCHMARK_CONNSTR: ${{ steps.set-up-connstr.outputs.connstr }}
- name: Benchmark pgvector hnsw queries
uses: ./.github/actions/run-python-test-set
with:
build_type: ${{ env.BUILD_TYPE }}
test_selection: performance
run_in_parallel: false
save_perf_report: ${{ env.SAVE_PERF_REPORT }}
extra_params: -m remote_cluster --timeout 21600 -k test_pgbench_remote_pgvector
env:
BENCHMARK_CONNSTR: ${{ steps.set-up-connstr.outputs.connstr }}
VIP_VAP_ACCESS_TOKEN: "${{ secrets.VIP_VAP_ACCESS_TOKEN }}"
PERF_TEST_RESULT_CONNSTR: "${{ secrets.PERF_TEST_RESULT_CONNSTR }}"
- name: Create Allure report
if: ${{ !cancelled() }}
uses: ./.github/actions/allure-report-generate
- name: Post to a Slack channel
if: ${{ github.event.schedule && failure() }}
uses: slackapi/slack-github-action@v1
with:
channel-id: "C033QLM5P7D" # dev-staging-stream
slack-message: "Periodic perf testing neon-captest-pgvector: ${{ job.status }}\n${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}"
env:
SLACK_BOT_TOKEN: ${{ secrets.SLACK_BOT_TOKEN }}
clickbench-compare:
# ClichBench DB for rds-aurora and rds-Postgres deployed to the same clusters
# we use for performance testing in pgbench-compare.
@@ -351,7 +445,7 @@ jobs:
#
# *_CLICKBENCH_CONNSTR: Genuine ClickBench DB with ~100M rows
# *_CLICKBENCH_10M_CONNSTR: DB with the first 10M rows of ClickBench DB
if: ${{ !cancelled() }}
if: ${{ !cancelled() && (github.event.inputs.run_only_pgvector_tests == 'false' || github.event.inputs.run_only_pgvector_tests == null) }}
needs: [ generate-matrices, pgbench-compare ]
strategy:
@@ -455,7 +549,7 @@ jobs:
# We might change it after https://github.com/neondatabase/neon/issues/2900.
#
# *_TPCH_S10_CONNSTR: DB generated with scale factor 10 (~10 GB)
if: ${{ !cancelled() }}
if: ${{ !cancelled() && (github.event.inputs.run_only_pgvector_tests == 'false' || github.event.inputs.run_only_pgvector_tests == null) }}
needs: [ generate-matrices, clickbench-compare ]
strategy:
@@ -557,7 +651,7 @@ jobs:
SLACK_BOT_TOKEN: ${{ secrets.SLACK_BOT_TOKEN }}
user-examples-compare:
if: ${{ !cancelled() }}
if: ${{ !cancelled() && (github.event.inputs.run_only_pgvector_tests == 'false' || github.event.inputs.run_only_pgvector_tests == null) }}
needs: [ generate-matrices, tpch-compare ]
strategy: