chore: Update S3 code snippets (#2854)

* chore: Update S3 code snippets

* update tooltip

* cleanup code
This commit is contained in:
Guillaume Bouvignies
2023-12-14 15:35:24 +01:00
committed by GitHub
parent 71743801c8
commit 8d87712e2c
3 changed files with 156 additions and 203 deletions
@@ -72,7 +72,7 @@
let selected = 'inputs'
let advancedSelected = 'retries'
let advancedRuntimeSelected = 'concurrency'
let s3Kind = 'push'
let s3Kind = 's3_client'
let wrapper: HTMLDivElement
let panes: HTMLElement
let totalTopGap = 0
@@ -498,19 +498,24 @@
<h2 class="pb-4">
S3 snippets
<Tooltip>
Pull, push and aggregate snippets for S3, particularly useful for ETL
processes.
Read/Write object from/to S3 and leverage Polars and DuckDB to run
efficient ETL processes.
</Tooltip>
</h2>
</div>
<div class="flex gap-2 justify-between mb-4 items-center">
<div class="flex gap-2">
<ToggleButtonGroup bind:selected={s3Kind} class="w-auto">
<ToggleButton value="push" size="sm" label="Push" />
<ToggleButton value="pull" size="sm" label="Pull" />
<ToggleButton value="aggregate" size="sm" label="Aggregate" />
{#if flowModule.value['language'] === 'deno'}
<ToggleButton value="s3_client" size="sm" label="S3 lite client" />
{:else}
<ToggleButton value="s3_client" size="sm" label="Boto3" />
<ToggleButton value="polars" size="sm" label="Polars" />
<ToggleButton value="duckdb" size="sm" label="DuckDB" />
{/if}
</ToggleButtonGroup>
</div>
<Button
size="xs"
on:click={() =>
@@ -1,105 +1,35 @@
const deno = {
push: `import { S3Client } from "https://deno.land/x/s3_lite_client@0.2.0/mod.ts";
s3_client: `import * as wmill from "npm:windmill-client@1";
import { S3Client } from "https://deno.land/x/s3_lite_client@0.2.0/mod.ts";
type S3 = {
port: number;
bucket: string;
region: string;
useSSL: boolean;
endPoint: string;
accessKey: string;
pathStyle: boolean;
secretKey: string;
};
type s3object = object;
export async function main(
s3Config: S3,
basePath = "windmill",
objectName: string,
data: string | Uint8Array | ReadableStream<Uint8Array>,
) {
// flow_path/schedule_path_or_manual/flow_step_id/ts_job_id
const objectPath = Deno.env.get("WM_OBJECT_PATH");
export async function main(inputFile: s3object) {
const s3Resource = await wmill.getResource(
"<PATH_TO_S3_RESOURCE>",
);
const s3Client = new S3Client(s3Resource);
const fullPath = basePath + "/" + objectPath + "/" + objectName;
const outputFile = "output/hello.txt"
const s3Client = new S3Client(s3Config);
// read object from S3
const getObjectResponse = await s3Client.getObject(inputFile["s3"]);
const inputObjContent = await getObjectResponse.text();
console.log(inputObjContent);
await s3Client.putObject(fullPath, data);
// write object to S3
await s3Client.putObject(outputFile, "Hello Windmill!");
return fullPath;
}`,
pull: `import { S3Client } from "https://deno.land/x/s3_lite_client@0.2.0/mod.ts";
type S3 = {
port: number;
bucket: string;
region: string;
useSSL: boolean;
endPoint: string;
accessKey: string;
pathStyle: boolean;
secretKey: string;
};
export async function main(
s3Config: S3,
objectPath: string,
) {
const s3Client = new S3Client(s3Config);
const response = await s3Client.getObject(objectPath)
// for instance, if it is a text file
const result = await response.text()
return result
}`,
aggregate: `import { S3Client } from "https://deno.land/x/s3_lite_client@0.2.0/mod.ts";
type S3 = {
port: number;
bucket: string;
region: string;
useSSL: boolean;
endPoint: string;
accessKey: string;
pathStyle: boolean;
secretKey: string;
};
export async function main(
s3Config: S3,
objectPath: string,
last_n = 10,
) {
// object path assumed to be of the form windmill/flow_path/schedule_path_or_manual/flow_step_id/ts_job_id/**
const prefix = objectPath.split("/").slice(0, 4).join("/")
const s3Client = new S3Client(s3Config);
// will return the object keys of the last_n jobs
const objs = {};
for await (const entry of s3Client.listObjects({ prefix })) {
const obj_key = entry.key
const ts = parseInt(obj_key.split("/")[4].split("_")[0])
if (ts in objs) {
objs[ts].append()
} else {
objs[ts] = [obj_key]
}
// list objects from bucket
for await (const obj of s3Client.listObjects({ prefix: "output/" })) {
console.log(obj.key);
}
const tss = Object.keys(objs).sort().slice(-last_n)
const final_objs = []
for (const ts of tss) {
final_objs.push(...objs[ts])
}
return final_objs;
}`
return {
"s3": outputFile,
};
}
`
}
export default deno
@@ -1,118 +1,136 @@
const python3 = {
push: `import os
import boto3
from typing import TypedDict, Union
class s3(TypedDict):
port: int
bucket: str
region: str
useSSL: bool
endPoint: str
accessKey: str
pathStyle: bool
secretKey: str
def main(
s3_config: s3,
object_name: str,
data: Union[str, bytes],
base_path: str = "windmill",
):
# flow_path/schedule_path_or_manual/flow_step_id/ts_job_id
object_path = os.getenv("WM_OBJECT_PATH")
full_path = base_path + "/" + object_path + "/" + object_name
s3Client = boto3.client(
's3',
region_name=s3_config['region'],
aws_access_key_id=s3_config['accessKey'],
aws_secret_access_key=s3_config['secretKey']
)
s3Client.put_object(Body=data, Bucket=s3_config['bucket'], Key=full_path)
return full_path`,
pull: `import boto3
from typing import TypedDict
class s3(TypedDict):
port: int
bucket: str
region: str
useSSL: bool
endPoint: str
accessKey: str
pathStyle: bool
secretKey: str
def main(
s3_config: s3,
object_path: str,
):
s3Client = boto3.client(
's3',
region_name=s3_config['region'],
aws_access_key_id=s3_config['accessKey'],
aws_secret_access_key=s3_config['secretKey']
)
obj = s3Client.get_object(Bucket=s3_config["bucket"], Key=object_path)["Body"].read()
# for instance, if it is a text file
return str(obj, encoding="utf-8")`,
aggregate: `import os
s3_client: `import wmill
import boto3
from typing import TypedDict
class s3(TypedDict):
port: int
bucket: str
region: str
useSSL: bool
endPoint: str
accessKey: str
pathStyle: bool
secretKey: str
s3object = dict
def main(
s3_config: s3,
object_path: str,
last_n = 10,
):
# object path assumed to be of the form windmill/flow_path/schedule_path_or_manual/flow_step_id/ts_job_id/**
prefix = "/".join(object_path.split("/")[:4])
s3Client = boto3.client(
def main(input_file: s3object):
s3_resource = wmill.get_resource("<PATH_TO_S3_RESOURCE>")
bucket = s3_resource["bucket"]
s3client = boto3.client(
"s3",
region_name=s3_config["region"],
aws_access_key_id=s3_config["accessKey"],
aws_secret_access_key=s3_config["secretKey"],
region_name=s3_resource["region"],
aws_access_key_id=s3_resource["accessKey"],
aws_secret_access_key=s3_resource["secretKey"],
)
# will return the object keys of the last_n jobs
objs = {}
for content in s3Client.list_objects(
Bucket=s3_config["bucket"], Prefix=prefix
)["Contents"]:
obj_key = content["Key"]
ts = int(obj_key.split("/")[4].split("_")[0])
if ts in objs:
objs[ts].append(obj_key)
else:
objs[ts] = [obj_key]
output_file = "output/hello.txt"
tss = sorted(objs.keys(), reverse=True)[:last_n]
# read object from S3 and print its content
input_obj = s3client.get_object(Bucket=bucket, Key=input_file["s3"])["Body"].read()
print(input_obj)
final_objs = []
for ts in tss:
final_objs.extend(objs[ts])
# write object to s3
s3client.put_object(Bucket=bucket, Key=output_file, Body="Hello Windmill!")
return final_objs`
# download file to the job temporary folder:
s3client.download_file(
Bucket=bucket, Key=input_file["s3"], Filename="./download.txt"
)
with open("./download.txt", mode="rb") as downloaded_file:
print(downloaded_file.read())
# upload file from temporary folder to S3
uploaded_file = "output/uploaded.txt"
with open("./upload.txt", mode="wb") as file_to_upload:
file_to_upload.write(str.encode("Hello Windmill!"))
s3client.upload_file(Bucket=bucket, Key=uploaded_file, Filename="./upload.txt")
# see https://boto3.amazonaws.com/v1/documentation/api/latest/guide/s3-examples.html
# and https://boto3.amazonaws.com/v1/documentation/api/latest/reference/services/s3.html
# for more code examples (listing object, deleting files, etc)
return [
s3object({"s3": output_file}),
s3object({"s3": uploaded_file}),
]
`,
polars: `import wmill
import polars as pl
import s3fs
s3object = dict
def main(input_file: s3object):
s3 = s3fs.S3FileSystem(
# this will default to the workspace s3 resource
**wmill.polars_connection_settings()["s3fs_args"]
# this will use the designated resource
# **wmill.polars_connection_settings("<PATH_TO_S3_RESOURCE>")["s3fs_args"]
)
bucket = "<S3_BUCKET_NAME>"
input_uri = "s3://{}/{}".format(bucket, input_file["s3"])
output_file = "output/result.parquet"
output_uri = "s3://{}/{}".format(bucket, output_file)
with (
s3.open(input_uri, mode="rb") as input_s3,
s3.open(output_uri, mode="wb") as output_s3,
):
# input is a parquet file, we use read_parquet in lazy mode.
# Polars can read various file types, see
# https://pola-rs.github.io/polars/py-polars/html/reference/io.html
input_df = pl.read_parquet(input_s3).lazy()
# process the Polars dataframe. See Polars docs:
# for dataframe: https://pola-rs.github.io/polars/py-polars/html/reference/dataframe/index.html
# for lazy dataframe: https://pola-rs.github.io/polars/py-polars/html/reference/lazyframe/index.html
output_df = input_df.collect()
print(output_df)
# persist the output dataframe back to S3 and return it
output_df.write_parquet(output_s3)
return s3object({"s3": output_file})
`,
duckdb: `import wmill
import duckdb
s3object = dict
def main(input_file: s3object):
# create a DuckDB database in memory
# see https://duckdb.org/docs/api/python/dbapi
conn = duckdb.connect()
# connect duck db to the S3 bucket - this will default to the workspace s3 resource
conn.execute(wmill.duckdb_connection_settings()["connection_settings_str"])
# this will use the designated resource
# conn.execute(wmill.duckdb_connection_settings("<PATH_TO_S3_RESOURCE>")["connection_settings_str"])
bucket = "<S3_BUCKET_NAME>"
input_uri = "s3://{}/{}".format(bucket, input_file["s3"])
output_file = "output/result.parquet"
output_uri = "s3://{}/{}".format(bucket, output_file)
# Run queries directly on the parquet file
query_result = conn.sql(
"""
SELECT * FROM read_parquet('{}')
""".format(
input_uri
)
)
query_result.show()
# Write the result of a query to a different parquet file on S3
conn.execute(
"""
COPY (
SELECT COUNT(*) FROM read_parquet('{input_uri}')
) TO '{output_uri}' (FORMAT 'parquet');
""".format(
input_uri=input_uri, output_uri=output_uri
)
)
conn.close()
return s3object({"s3": output_file})
`,
}
export default python3