Compute: build rdkit without freetype support (#6495)

## Problem
`rdkit` extension is built with `RDK_BUILD_FREETYPE_SUPPORT=ON` (by
default), which requires a bunch of additional dependencies, but the
support of freetype fonts isn't required for Postgres.


With `RDK_BUILD_FREETYPE_SUPPORT=ON`:
```
ldd /usr/local/pgsql/lib/rdkit.so
	linux-vdso.so.1 (0x0000ffff82ea8000)
	libfreetype.so.6 => /usr/lib/aarch64-linux-gnu/libfreetype.so.6 (0x0000ffff825e5000)
	libboost_serialization.so.1.74.0 => /usr/lib/aarch64-linux-gnu/libboost_serialization.so.1.74.0 (0x0000ffff82590000)
	libpthread.so.0 => /lib/aarch64-linux-gnu/libpthread.so.0 (0x0000ffff8255f000)
	libstdc++.so.6 => /usr/lib/aarch64-linux-gnu/libstdc++.so.6 (0x0000ffff82387000)
	libm.so.6 => /lib/aarch64-linux-gnu/libm.so.6 (0x0000ffff822dc000)
	libgcc_s.so.1 => /lib/aarch64-linux-gnu/libgcc_s.so.1 (0x0000ffff822b8000)
	libc.so.6 => /lib/aarch64-linux-gnu/libc.so.6 (0x0000ffff82144000)
	libpng16.so.16 => /usr/lib/aarch64-linux-gnu/libpng16.so.16 (0x0000ffff820fd000)
	libz.so.1 => /lib/aarch64-linux-gnu/libz.so.1 (0x0000ffff820d3000)
	libbrotlidec.so.1 => /usr/lib/aarch64-linux-gnu/libbrotlidec.so.1 (0x0000ffff820b8000)
	/lib/ld-linux-aarch64.so.1 (0x0000ffff82e78000)
	libbrotlicommon.so.1 => /usr/lib/aarch64-linux-gnu/libbrotlicommon.so.1 (0x0000ffff82087000)
```

With `RDK_BUILD_FREETYPE_SUPPORT=OFF`:
```
ldd /usr/local/pgsql/lib/rdkit.so
	linux-vdso.so.1 (0x0000ffffbba75000)
	libboost_serialization.so.1.74.0 => /usr/lib/aarch64-linux-gnu/libboost_serialization.so.1.74.0 (0x0000ffffbb259000)
	libpthread.so.0 => /lib/aarch64-linux-gnu/libpthread.so.0 (0x0000ffffbb228000)
	libstdc++.so.6 => /usr/lib/aarch64-linux-gnu/libstdc++.so.6 (0x0000ffffbb050000)
	libm.so.6 => /lib/aarch64-linux-gnu/libm.so.6 (0x0000ffffbafa5000)
	libgcc_s.so.1 => /lib/aarch64-linux-gnu/libgcc_s.so.1 (0x0000ffffbaf81000)
	libc.so.6 => /lib/aarch64-linux-gnu/libc.so.6 (0x0000ffffbae0d000)
	/lib/ld-linux-aarch64.so.1 (0x0000ffffbba45000)
```

## Summary of changes
- Build `rdkit` with `RDK_BUILD_FREETYPE_SUPPORT=OFF`
- Remove extra dependencies from the Compute image
This commit is contained in:
Alexander Bayandin
2024-01-29 16:16:37 +00:00
committed by GitHub
parent b04a6acd6c
commit 6a85a06e1b

View File

@@ -520,8 +520,7 @@ RUN apt-get update && \
libboost-regex1.74-dev \
libboost-serialization1.74-dev \
libboost-system1.74-dev \
libeigen3-dev \
libfreetype6-dev
libeigen3-dev
ENV PATH "/usr/local/pgsql/bin/:/usr/local/pgsql/:$PATH"
RUN wget https://github.com/rdkit/rdkit/archive/refs/tags/Release_2023_03_3.tar.gz -O rdkit.tar.gz && \
@@ -547,6 +546,7 @@ RUN wget https://github.com/rdkit/rdkit/archive/refs/tags/Release_2023_03_3.tar.
-D PostgreSQL_LIBRARY_DIR=`pg_config --libdir` \
-D RDK_INSTALL_INTREE=OFF \
-D RDK_INSTALL_COMIC_FONTS=OFF \
-D RDK_BUILD_FREETYPE_SUPPORT=OFF \
-D CMAKE_BUILD_TYPE=Release \
. && \
make -j $(getconf _NPROCESSORS_ONLN) && \
@@ -901,7 +901,7 @@ COPY --from=compute-tools --chown=postgres /home/nonroot/target/release-line-deb
# libgeos, libgdal, libsfcgal1, libproj and libprotobuf-c1 for PostGIS
# libxml2, libxslt1.1 for xml2
# libzstd1 for zstd
# libboost*, libfreetype6, and zlib1g for rdkit
# libboost* for rdkit
# ca-certificates for communicating with s3 by compute_ctl
RUN apt update && \
apt install --no-install-recommends -y \
@@ -914,7 +914,6 @@ RUN apt update && \
libboost-serialization1.74.0 \
libboost-system1.74.0 \
libossp-uuid16 \
libfreetype6 \
libgeos-c1v5 \
libgdal28 \
libproj19 \
@@ -926,7 +925,6 @@ RUN apt update && \
libcurl4-openssl-dev \
locales \
procps \
zlib1g \
ca-certificates && \
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* && \
localedef -i en_US -c -f UTF-8 -A /usr/share/locale/locale.alias en_US.UTF-8