## Storage & Compute release 2024-07-22
This PR has so many commits because the release branch diverged from `main`.
Details https://neondb.slack.com/archives/C033A2WE6BZ/p1721650938949059?thread_ts=1721308848.034069&cid=C033A2WE6BZ
The commit range that is truly new since the last storage release are the the `main` commit which I cherry-picked using this command
```
git cherry-pick 8a8b83df27383a07bb7dbba519325c15d2f46357..4e547e6
```
PR #8299 has switched the storage scrubber to use
`DefaultCredentialsChain`. Now we do this for `remote_storage`, as it
allows us to use `remote_storage` from inside kubernetes. Most of the
diff is due to `GenericRemoteStorage::from_config` becoming `async fn`.
This adds an archival_config endpoint to the pageserver. Currently it
has no effect, and always "works", but later the intent is that it will
make a timeline archived/unarchived.
- [x] add yml spec
- [x] add endpoint handler
Part of https://github.com/neondatabase/neon/issues/8088
## Problem
There are some swagger errors in `pageserver/src/http/openapi_spec.yml`
```
Error 431 15000 Object includes not allowed fields
Error 569 3100401 should always have a 'required'
Error 569 15000 Object includes not allowed fields
Error 1111 10037 properties members must be schemas
```
## Summary of changes
Fixed the above errors.
## Problem
After a shard split, the pageserver leaves the ancestor shard's content
in place. It may be referenced by child shards, but eventually child
shards will de-reference most ancestor layers as they write their own
data and do GC. We would like to eventually clean up those ancestor
layers to reclaim space.
## Summary of changes
- Extend the physical GC command with `--mode=full`, which includes
cleaning up unreferenced ancestor shard layers
- Add test `test_scrubber_physical_gc_ancestors`
- Remove colored log output: in testing this is irritating ANSI code
spam in logs, and in interactive use doesn't add much.
- Refactor storage controller API client code out of storcon_client into
a `storage_controller/client` crate
- During physical GC of ancestors, call into the storage controller to
check that the latest shards seen in S3 reflect the latest state of the
tenant, and there is no shard split in progress.
We're removing the usage of this long-meaningless config field in
https://github.com/neondatabase/aws/pull/1599
Once that PR has been deployed to staging and prod, we can merge this
PR.
## Problem
My prior PR https://github.com/neondatabase/neon/pull/8422
caused leftovers in the GitHub action runner work directory with root
permission.
As an example see here
https://github.com/neondatabase/neon/actions/runs/10001857641/job/27646237324#step:3:37
To work-around we install vanilla postgres as non-root using deb
packages in /home/nonroot user directory
## Summary of changes
- since we cannot use root we install the deb pkgs directly and create
symbolic links for psql, pgbench and libs in expected places
- continue jobs an aws even if azure jobs fail (because this region is
currently unreliable)
Successor of #8288 , just enable zstd in tests. Also adds a test that
creates easily compressable data.
Part of #5431
---------
Co-authored-by: John Spray <john@neon.tech>
Co-authored-by: Joonas Koivunen <joonas@neon.tech>
The error means that manager exited earlier than `ResidenceGuard` and
it's not unexpected with current deletion implementation. This commit
changes log level to reduse noise.
Use the k-merge iterator in the compaction process to reduce memory
footprint.
part of https://github.com/neondatabase/neon/issues/8002
## Summary of changes
* refactor the bottom-most compaction code to use k-merge iterator
* add Send bound on some structs as it is used across the await points
---------
Signed-off-by: Alex Chi Z <chi@neon.tech>
Co-authored-by: Arpad Müller <arpad-m@users.noreply.github.com>
We have an issue that some partial uploaded segments can be actually
missing in remote storage. I found this issue when was looking at the
logs in staging, and it can be triggered by failed uploads:
1. Code tries to upload `SEG_TERM_LSN_LSN_sk5.partial`, but receives
error from S3
2. The failed attempt is saved to `segments` vec
3. After some time, the code tries to upload
`SEG_TERM_LSN_LSN_sk5.partial` again
4. This time the upload is successful and code calls `gc()` to delete
previous uploads
5. Since new object and old object share the same name, uploaded data
gets deleted from remote storage
This commit fixes the issue by patching `gc()` not to delete objects
with the same name as currently uploaded.
---------
Co-authored-by: Arpad Müller <arpad-m@users.noreply.github.com>
## Problem
Ahead of enabling eviction in the field, where it will become the
normal/default mode, let's enable it by default throughout our tests in
case any issues become visible there.
## Summary of changes
- Make default `extra_opts` for safekeepers enable offload & deletion
- Set low timeouts in `extra_opts` so that tests running for tens of
seconds have a chance to hit some of these background operations.
## Problem
These tests time out ~1 in 50 runs when in debug mode.
There is no indication of a real issue: they're just wrappers that have
large numbers of individual tests contained within on pytest case.
## Summary of changes
- Bump pg_regress timeout from 600 to 900s
- Bump test_isolation timeout from 300s (default) to 600s
In future it would be nice to break out these tests to run individual
cases (or batches thereof) as separate tests, rather than this monolith.
## Problem
This test would occasionally fail its metric check. This could happen in
the rare case that the nodes had all been restarted before their most
recent eviction.
The metric check was added in
https://github.com/neondatabase/neon/pull/8348
## Summary of changes
- Check metrics before each restart, accumulate into a bool that we
assert on at the end of the test
When `NeonEnv.from_repo_dir` was introduced, storage controller stored
its
state exclusively `attachments.json`.
Since then, it has moved to using Postgres, which stores its state in
`storage_controller_db`.
But `NeonEnv.from_repo_dir` wasn't adjusted to do this.
This PR rectifies the situation.
Context for this is failures in
`test_pageserver_characterize_throughput_with_n_tenants`
CF:
https://neondb.slack.com/archives/C033RQ5SPDH/p1721035799502239?thread_ts=1720901332.293769&cid=C033RQ5SPDH
Notably, `from_repo_dir` is also used by the backwards- and
forwards-compatibility.
Thus, the changes in this PR affect those tests as well.
However, it turns out that the compatibility snapshot already contains
the `storage_controller_db`.
Thus, it should just work and in fact we can remove hacks like
`fixup_storage_controller`.
Follow-ups created as part of this work:
* https://github.com/neondatabase/neon/issues/8399
* https://github.com/neondatabase/neon/issues/8400
## Problem
There are something wrong in the comment of
`control_plane/src/broker.rs` and `control_plane/src/pageserver.rs`
## Summary of changes
Fixed the comment about component name and their data path in
`control_plane/src/broker.rs` and `control_plane/src/pageserver.rs`.
## Problem
We lack insight into:
- How much of a tenant's physical size is image vs. delta layers
- Average sizes of image vs. delta layers
- Total layer counts per timeline, indicating size of index_part object
As well as general observability love, this is motivated by
https://github.com/neondatabase/neon/issues/6738, where we need to
define some sensible thresholds for storage amplification, and using
total physical size may not work well (if someone does a lot of DROPs
then it's legitimate for the physical-synthetic ratio to be huge), but
the ratio between image layer size and delta layer size may be a better
indicator of whether we're generating unreasonable quantities of image
layers.
## Summary of changes
- Add pageserver_layer_bytes and pageserver_layer_count metrics,
labelled by timeline and `kind` (delta or image)
- Add & subtract these with LayerInner's lifetime.
I'm intentionally avoiding using a generic metric RAII guard object, to
avoid bloating LayerInner: it already has all the information it needs
to update metric on new+drop.
This test reproduces the case of a writer creating a deep stack of L0
layers. It uses realistic layer sizes and writes several gigabytes of
data, therefore runs as a performance test although it is validating
memory footprint rather than performance per se.
It acts a regression test for two recent fixes:
- https://github.com/neondatabase/neon/pull/8401
- https://github.com/neondatabase/neon/pull/8391
In future it will demonstrate the larger improvement of using a k-merge
iterator for L0 compaction (#8184)
This test can be extended to enforce limits on the memory consumption of
other housekeeping steps, by restarting the pageserver and then running
other things to do the same "how much did RSS increase" measurement.
Existing tenants and some selection of layers might produce duplicated
keys. Add tests to ensure the k-merge iterator handles it correctly. We
also enforced ordering of the k-merge iterator to put images before
deltas.
part of https://github.com/neondatabase/neon/issues/8002
---------
Signed-off-by: Alex Chi Z <chi@neon.tech>
Co-authored-by: Arpad Müller <arpad-m@users.noreply.github.com>
## Problem
We want to run performance tests on all supported cloud providers.
We want to run most tests on the postgres version which is default for
new projects in production, currently (July 24) this is postgres version
16
## Summary of changes
- change default postgres version for some (performance) tests to 16
(which is our default for new projects in prod anyhow)
- add azure region to pgbench_compare jobs
- add azure region to pgvector benchmarking jobs
- re-used project `weathered-snowflake-88107345` was prepared with 1
million embeddings running on 7 minCU 7 maxCU in azure region to compare
with AWS region (pgvector indexing and hnsw queries)
- see job pgbench-pgvector
- Note we now have a 11 environments combinations where we run
pgbench-compare and 5 are for k8s-pod (deprecated) which we can remove
in the future once auto-scaling team approves.
## Logs
A current run with the changes from this pull request is running here
https://github.com/neondatabase/neon/actions/runs/9972096222
Note that we currently expect some failures due to
- https://github.com/neondatabase/neon/issues/8275
- instability of projects on azure region
## Problem
When a tenant creates a new timeline that they will treat as their
'main' history,
it is awkward to permanently retain an 'old main' timeline as its
ancestor. Currently
this is necessary because it is forbidden to delete a timeline which has
descendents.
## Summary of changes
A new pageserver API is proposed to 'adopt' data from a parent timeline
into
one of its children, such that the link between ancestor and child can
be severed,
leaving the parent in a state where it may then be deleted.
---------
Co-authored-by: Joonas Koivunen <joonas@neon.tech>
## Problem
ValueRef is an unnecessarily large structure, because it carries a
cursor. L0 compaction currently instantiates gigabytes of these under
some circumstances.
## Summary of changes
- Carry a ref to the parent layer instead of a cursor, and construct a
cursor on demand.
This reduces RSS high watermark during L0 compaction by about 20%.
## Problem
The `evictions_with_low_residence_duration` is used as an indicator of
cache thrashing. However, there are situations where it is quite
legitimate to only have a short residence during compaction, where a
delta is downloaded, used to generate an image layer, and then
discarded. This can lead to false positive alerts.
## Summary of changes
- Only track low residence duration for layers that have been accessed
at least once (compaction doesn't count as an access). This will give us
a metric that indicates thrashing on layers that the _user_ is using,
rather than those we're downloading for housekeeping purposes.
Once we add "layer visibility" as an explicit property of layers, this
can also be used as a cleaner condition (residence of non-visible layers
should never be alertable)
## Problem
close https://github.com/neondatabase/neon/issues/8389
## Summary of changes
A quick mitigation for tenants with fast writes. We compact at most 60
delta layers at a time, expecting a memory footprint of 15GB. We will
pick the oldest 60 L0 layers.
This should be a relatively safe change so no test is added. Question is
whether to make this parameter configurable via tenant config.
---------
Signed-off-by: Alex Chi Z <chi@neon.tech>
Co-authored-by: John Spray <john@neon.tech>
- `horizon` is a confusing term, it's not at all obvious that this means
space-based retention limit, rather than the total GC history limit.
Rename to `GcCutoffs::space`.
- `pitr` is less confusing, but still an unecessary level of indirection
from what we really mean: a time-based condition. The fact that we use
that that time-history for Point In Time Recovery doesn't mean we have
to refer to time as "pitr" everywhere. Rename to `GcCutoffs::time`.
As described in #8385, the likely source for flakiness in
test_tenant_creation_fails is the following sequence of events:
1. test instructs the storage controller to create the tenant
2. storage controller adds the tenant and persists it to the database.
issues a creation request
3. the pageserver restarts with the failpoint disabled
4. storage controller's background reconciliation still wants to create
the tenant
5. pageserver gets new request to create the tenant from background
reconciliation
This commit just avoids the storage controller entirely. It has its own
set of issues, as the re-attach request will obviously not include the
tenant, but it's still useful to test for non-existence of the tenant.
The generation is also not optional any more during tenant attachment.
If you omit it, the pageserver yields an error. We change the signature
of `tenant_attach` to reflect that.
Alternative to #8385Fixes#8266
## Problem
This structure was in an Arc<> unnecessarily, making it harder to reason
about its lifetime (i.e. it was superficially possible for LayerManager
to outlive timeline, even though no code used it that way)
## Summary of changes
- Remove the Arc<>
Right now timeline detach ancestor reports an error (409, "no ancestor")
on a new attempt after successful completion. This makes it troublesome
for storage controller retries. Fix it to respond with `200 OK` as if
the operation had just completed quickly.
Additionally, the returned timeline identifiers in the 200 OK response
are now ordered so that responses between different nodes for error
comparison are done by the storage controller added in #8353.
Design-wise, this PR introduces a new strategy for accessing the latest
uploaded IndexPart:
`RemoteTimelineClient::initialized_upload_queue(&self) ->
Result<UploadQueueAccessor<'_>, NotInitialized>`. It should be a more
scalable way to query the latest uploaded `IndexPart` than to add a
query method for each question directly on `RemoteTimelineClient`.
GC blocking will need to be introduced to make the operation fully
idempotent. However, it is idempotent for the cases demonstrated by
tests.
Cc: #6994
## Problem
Pageserver GC uses a size-based condition (GC "horizon" in addition to
time-based "PITR").
Eventually we plan to retire the size-based condition:
https://github.com/neondatabase/neon/issues/6374
Currently, we always apply the more conservative of the two, meaning
that tenants always retain at least 64MB of history (default horizon),
even after a very long time has passed. This is particularly acute in
cases where someone has dropped tables/databases, and then leaves a
database idle: the horizon can prevent GCing very large quantities of
historical data (we already account for this in synthetic size by
ignoring gc horizon).
We're not entirely removing GC horizon right now because we don't want
to 100% rely on standby_horizon for robustness of physical replication,
but we can tweak our logic to avoid retaining that 64MB LSN length
indefinitely.
## Summary of changes
- Rework `Timeline::find_gc_cutoffs`, with new logic:
- If there is no PITR set, then use `DEFAULT_PITR_INTERVAL` (1 week) to
calculate a time threshold. Retain either the horizon or up to that
thresholds, whichever requires less data.
- When there is a PITR set, and we have unambiguously resolved the
timestamp to an LSN, then ignore the GC horizon entirely. For typical
PITRs (1 day, 1 week), this will still easily retain enough data to
avoid stressing read only replicas.
The key property we end up with, whether a PITR is set or not, is that
after enough time has passed, our GC cutoff on an idle timeline will
catch up with the last_record_lsn.
Using `DEFAULT_PITR_INTERVAL` is a bit of an arbitrary hack, but this
feels like it isn't really worth the noise of exposing in TenantConfig.
We could just make it a different named constant though. The end-end
state will be that there is no gc_horizon at all, and that tenants with
pitr_interval=0 would truly retain no history, so this constant would go
away.
Currently storage controller does not support forwarding timeline detach
ancestor requests to pageservers. Add support for forwarding `PUT
.../:tenant_id/timelines/:timeline_id/detach_ancestor`. Implement the
support mostly as is, because the timeline detach ancestor will be made
(mostly) idempotent in future PR.
Cc: #6994
PR #8299 has switched the storage scrubber to use
`DefaultCredentialsChain`. Now we do this for `remote_storage`, as it
allows us to use `remote_storage` from inside kubernetes. Most of the
diff is due to `GenericRemoteStorage::from_config` becoming `async fn`.
This adds an archival_config endpoint to the pageserver. Currently it
has no effect, and always "works", but later the intent is that it will
make a timeline archived/unarchived.
- [x] add yml spec
- [x] add endpoint handler
Part of https://github.com/neondatabase/neon/issues/8088
## Problem
There are some swagger errors in `pageserver/src/http/openapi_spec.yml`
```
Error 431 15000 Object includes not allowed fields
Error 569 3100401 should always have a 'required'
Error 569 15000 Object includes not allowed fields
Error 1111 10037 properties members must be schemas
```
## Summary of changes
Fixed the above errors.
