Commit Graph

5370 Commits

Author SHA1 Message Date
BodoBolero
ff4200e8cf with the change in this PR the pgvector patch should become obsolete 2024-06-07 13:28:13 +02:00
Konstantin Knizhnik
8c6429164f SAtop unlogged build in neon_immedsync which is called by GIST for sorted index build 2024-06-06 18:15:28 +03:00
Konstantin Knizhnik
dd28d82558 Ignore files left after interrupted unlogged build when comparing pgdir 2024-06-06 10:02:13 +03:00
Konstantin Knizhnik
6d694f2983 Fix unlogged_extend 2024-06-06 09:56:28 +03:00
Konstantin Knizhnik
ab8f127fc8 Conditionally release lock in stop_unlogged_build 2024-06-05 19:31:45 +03:00
Konstantin Knizhnik
c660697578 Remove assert 2024-06-05 18:19:59 +03:00
Konstantin Knizhnik
327f8f3989 Update comments 2024-06-05 17:49:34 +03:00
Konstantin Knizhnik
0c9dee9d06 Rebase with main 2024-06-03 21:36:37 +03:00
Konstantin Knizhnik
5a5775806f Restore check for poreserving pgdata_dir content 2024-06-03 21:16:04 +03:00
Konstantin Knizhnik
947f8c59dd Fix unlogged build 2024-06-03 21:16:02 +03:00
Konstantin Knizhnik
520101170f Pin information about unlogged relations in relsize cache until end of the build 2024-06-03 21:15:14 +03:00
Konstantin Knizhnik
1bd86c5c6a Rewrite unlogged relation build 2024-06-03 21:15:12 +03:00
Konstantin Knizhnik
e4fc6c3162 Comment check for pgdatadir match 2024-06-03 21:12:23 +03:00
Konstantin Knizhnik
fcd7d7008f Support unlogged build in Neon erxtension 2024-06-03 21:12:21 +03:00
Arpad Müller
acf0a11fea Move keyspace utils to inherent impls (#7929)
The keyspace utils like `is_rel_size_key` or `is_rel_fsm_block_key` and
many others are free functions and have to be either imported separately
or specified with the full path starting in `pageserver_api:🔑:`.
This is less convenient than if these functions were just inherent
impls.

Follow-up of #7890
Fixes #6438
2024-06-03 16:18:07 +02:00
Alex Chi Z
c1f55c1525 feat(pageserver): collect aux file tombstones (#7900)
close https://github.com/neondatabase/neon/issues/7800

This is a small change to enable the tombstone -> exclude from image
layer path. Most of the pull request is unit tests.

---------

Signed-off-by: Alex Chi Z <chi@neon.tech>
2024-06-03 09:56:36 -04:00
Joonas Koivunen
34f450c05a test: allow no vectored gets happening (#7939)
when running the regress tests locally without any environment variables
we use on CI, `test_pageserver_compaction_smoke` fails with division by
zero. fix it temporarily by allowing no vectored read happening. to be
cleaned when vectored get validation gets removed and the default value
can be changed.

Cc: https://github.com/neondatabase/neon/issues/7381
2024-06-03 09:37:11 -04:00
Arpad Müller
db477c0b8c Add metrics for Azure blob storage (#7933)
In issue #5590 it was proposed to implement metrics for Azure blob
storage. This PR implements them except for the part that performs the
rename, which is left for a followup.

Closes #5590
2024-06-02 14:10:56 +00:00
Arthur Petukhovsky
a345cf3fc6 Fix span for WAL removal task (#7930)
During refactoring in https://github.com/neondatabase/neon/pull/7887 I
forgot to add "WAL removal" span with ttid. This commit fixes it.
2024-06-01 12:23:59 +01:00
Arthur Petukhovsky
e98bc4fd2b Run gc on too many partial backup segments (#7700)
The general partial backup idea is that each safekeeper keeps only one
partial segment in remote storage at a time. Sometimes this is not true,
for example if we uploaded object to S3 but got an error when tried to
remove the previous upload. In this case we still keep a list of all
potentially uploaded objects in safekeeper state.

This commit prints a warning to logs if there is too many objects in
safekeeper state. This is not expected and we should try to fix this
state, we can do this by running gc.

I haven't seen this being an issue anywhere, but printing a warning is
something that I wanted to do and forgot in initial PR.
2024-06-01 00:18:56 +01:00
John Spray
7e60563910 pageserver: add GcError type (#7917)
## Problem

- Because GC exposes all errors as an anyhow::Error, we have
intermittent issues with spurious log errors during shutdown, e.g. in
this failure of a performance test
https://neon-github-public-dev.s3.amazonaws.com/reports/main/9300804302/index.html#suites/07874de07c4a1c9effe0d92da7755ebf/214a2154f6f0217a/

```
Gc failed 1 times, retrying in 2s: shutting down
```

GC really doesn't do a lot of complicated IO: it doesn't benefit from
the backtrace capabilities of anyhow::Error, and can be expressed more
robustly as an enum.

## Summary of changes

- Add GcError type and use it instead of anyhow::Error in GC functions
- In `gc_iteration_internal`, return GcError::Cancelled on shutdown
rather than Ok(()) (we only used Ok before because we didn't have a
clear cancellation error variant to use).
- In `gc_iteration_internal`, skip past timelines that are shutting
down, to avoid having to go through another GC iteration if we happen to
see a deleting timeline during a GC run.
- In `refresh_gc_info_internal`, avoid an error case where a timeline
might not be found after being looked up, by carrying an Arc<Timeline>
instead of a TimelineId between the first loop and second loop in the
function.
- In HTTP request handler, handle Cancelled variants as 503 instead of
turning all GC errors into 500s.
2024-05-31 22:20:06 +01:00
Joonas Koivunen
ef83f31e77 pagectl: key command for dumping what we know about the key (#7890)
What we know about the key via added `pagectl key $key` command:
- debug formatting
- shard placement when `--shard-count` is specified
- different boolean queries in `key.rs`
- aux files v2

Example:

```
$ cargo run -qp pagectl -- key 000000063F00004005000060270000100E2C
parsed from hex: 000000063F00004005000060270000100E2C:

Key { field1: 0, field2: 1599, field3: 16389, field4: 24615, field5: 0, field6: 1052204 }
rel_block:         true
rel_vm_block:      false
rel_fsm_block:     false
slru_block:        false
inherited:         true
rel_size:          false
slru_segment_size: false
recognized kind:   None
```
2024-05-31 18:19:41 +00:00
John Spray
9fda85b486 pageserver: remove AncestorStopping error variants (#7916)
## Problem

In all cases, AncestorStopping is equivalent to Cancelled.

This became more obvious in
https://github.com/neondatabase/neon/pull/7912#discussion_r1620582309
when updating these error types.

## Summary of changes

- Remove AncestorStopping, always use Cancelled instead
2024-05-31 17:02:10 +01:00
Alex Chi Z
87afbf6b24 test(pageserver): add test interface to create artificial layers (#7899)
This pull request adds necessary interfaces to deterministically create
scenarios we want to test. Simplify some test cases to use this
interface to make it stable + reproducible.

Compaction test will be able to use this interface. Also the upcoming
delete tombstone tests will use this interface to make test
reproducible.

## Summary of changes

* `force_create_image_layer`
* `force_create_delta_layer`
* `force_advance_lsn`
* `create_test_timeline_with_states`
* `branch_timeline_test_with_states`

---------

Signed-off-by: Alex Chi Z <chi@neon.tech>
2024-05-31 12:00:40 -04:00
Arthur Petukhovsky
16b2e74037 Add FullAccessTimeline guard in safekeepers (#7887)
This is a preparation for
https://github.com/neondatabase/neon/issues/6337.

The idea is to add FullAccessTimeline, which will act as a guard for
tasks requiring access to WAL files. Eviction will be blocked on these
tasks and WAL won't be deleted from disk until there is at least one
active FullAccessTimeline.

To get FullAccessTimeline, tasks call `tli.full_access_guard().await?`.
After eviction is implemented, this function will be responsible for
downloading missing WAL file and waiting until the download finishes.

This commit also contains other small refactorings:
- Separate `get_tenant_dir` and `get_timeline_dir` functions for
building a local path. This is useful for looking at usages and finding
tasks requiring access to local filesystem.
- `timeline_manager` is now responsible for spawning all background
tasks
- WAL removal task is now spawned instantly after horizon is updated
2024-05-31 13:19:45 +00:00
John Spray
5a394fde56 pageserver: avoid spurious "bad state" logs/errors during shutdown (#7912)
## Problem

- Initial size calculations tend to fail with `Bad state (not active)`

Closes: https://github.com/neondatabase/neon/issues/7911

## Summary of changes

- In `wait_lsn`, return WaitLsnError::Cancelled rather than BadState
when the state is Stopping
- Replace PageReconstructError's `Other` variant with a specific
`BadState` variant
- Avoid returning anyhow::Error from get_ready_ancestor_timeline -- this
was only used for the case where there was no ancestor. All callers of
this function had implicitly checked that the ancestor timeline exists
before calling it, so they can pass in the ancestor instead of handling
an error.
2024-05-31 13:31:42 +01:00
Arseny Sher
7ec70b5eff safekeeper: rename epoch to last_log_term.
epoch is a historical and potentially confusing name. It semantically means
lastLogTerm from the raft paper, so let's use it.

This commit changes only internal namings, not public interface (http).
2024-05-31 12:59:13 +03:00
Arseny Sher
1fcc2b37eb Add test checking term change during pull_timeline. 2024-05-31 12:58:59 +03:00
Arseny Sher
af40bf3c2e Fix term/epoch confusion in python tests.
Call epoch last_log_term and add separate term field.
2024-05-31 12:58:59 +03:00
Arseny Sher
e6db8069b0 neon_walreader: check after local read that the segment still exists.
Otherwise read might receive zeros/garbage if the file is recycled (renamed) for
as a future segment.
2024-05-31 12:57:56 +03:00
John Spray
98dadf8543 pageserver: quieten some shutdown logs around logical size and flush (#7907)
## Problem

Looking at several noisy shutdown logs:
- In https://github.com/neondatabase/neon/issues/7861 we're hitting a
log error with `InternalServerError(timeline shutting down\n'` on the
checkpoint API handler.
- In the field, we see initial_logical_size_calculation errors on
shutdown, via DownloadError
- In the field, we see errors logged from layer download code
(independent of the error propagated) during shutdown

Closes: https://github.com/neondatabase/neon/issues/7861

## Summary of changes

The theme of these changes is to avoid propagating anyhow::Errors for
cases that aren't really unexpected error cases that we might want a
stacktrace for, and avoid "Other" error variants unless we really do
have unexpected error cases to propagate.

- On the flush_frozen_layers path, use the `FlushLayerError` type
throughout, rather than munging it into an anyhow::Error. Give
FlushLayerError an explicit from_anyhow helper that checks for timeline
cancellation, and uses it to give a Cancelled error instead of an Other
error when the timeline is shutting down.
- In logical size calculation, remove BackgroundCalculationError (this
type was just a Cancelled variant and an Other variant), and instead use
CalculateLogicalSizeError throughout. This can express a
PageReconstructError, and has a From impl that translates cancel-like
page reconstruct errors to Cancelled.
- Replace CalculateLogicalSizeError's Other(anyhow::Error) variant case
with a Decode(DeserializeError) variant, as this was the only kind of
error we actually used in the Other case.
- During layer download, drop out early if the timeline is shutting
down, so that we don't do an `error!()` log of the shutdown error in
this case.
2024-05-31 09:18:58 +01:00
Arpad Müller
c18b1c0646 Update tokio-epoll-uring for linux-raw-sys (#7918)
Updates the `tokio-epoll-uring` dependency.

There is [only one change](342ddd197a...08ccfa94ff),
the adoption of linux-raw-sys for `statx` instead of using libc.

Part of #7889.
2024-05-30 17:45:48 +02:00
Alex Chi Z
f20a9e760f chore(pageserver): warn on delete non-existing file (#7847)
Consider the following sequence of migration:

```
1. user starts compute
2. force migrate to v2
3. user continues to write data
```

At the time of (3), the compute node is not aware that the page server
does not contain replication states any more, and might continue to
ingest neon-file records into the safekeeper. This will leave the
pageserver store a partial replication state and cause some errors. For
example, the compute could issue a deletion of some aux files in v1, but
this file does not exist in v2. Therefore, we should ignore all these
errors until everyone is migrated to v2.

Also note that if we see this warning in prod, it is likely because we
did not fully suspend users' compute when flipping the v1/v2 flag.

Signed-off-by: Alex Chi Z <chi@neon.tech>
2024-05-30 14:45:34 +00:00
Alex Chi Z
33395dcf4e perf(pageserver): postpone vectored get fringe keyspace construction (#7904)
Perf shows a significant amount of time is spent on `Keyspace::merge`.
This pull request postpones merging keyspace until retrieving the layer,
which contributes to a 30x improvement in aux keyspace basebackup time.

```
--- old
10000 files found in 0.580569459s
--- new
10000 files found in 0.02995075s
```

Signed-off-by: Alex Chi Z <chi@neon.tech>
2024-05-30 10:31:57 -04:00
Alex Chi Z
1eca8b8a6b fix(pageserver): ensure to_i128 works for metadata keys (#7895)
field2 of metadata keys can be 0xFFFF because of the mapping. Allow
0xFFFF for `to_i128`. An alternative is to encode 0xFFFF as 0xFFFFFFFF
(which is allowed in the original `to_i128`). But checking the places
where field2 is referenced, the rest part of the system does not seem to
depend on this assertion.

Signed-off-by: Alex Chi Z <chi@neon.tech>
2024-05-30 10:03:17 -04:00
YukiSeino
167394a073 refacter : VirtualFile::open uses AsRef (#7908)
## Problem
#7371 

## Summary of changes
* The VirtualFile::open, open_with_options, and create methods use
AsRef, similar to the standard library's std::fs APIs.
2024-05-30 15:58:20 +02:00
Conrad Ludgate
9a081c230f proxy: lazily parse startup pg params (#7905)
## Problem

proxy params being a `HashMap<String,String>` when it contains just
```
application_name: psql
database: neondb
user: neondb_owner
```
is quite wasteful allocation wise.

## Summary of changes

Keep the params in the wire protocol form, eg:
```
application_name\0psql\0database\0neondb\0user\0neondb_owner\0
```

Using a linear search for the map is fast enough at small sizes, which
is the normal case.
2024-05-30 11:02:38 +00:00
Conrad Ludgate
fddd11dd1a proxy: upload postgres connection options as json in the parquet upload (#7903)
## Problem

https://github.com/neondatabase/cloud/issues/9943

## Summary of changes

Captures the postgres options, converts them to json, uploads them in
parquet.
2024-05-30 11:10:27 +01:00
Conrad Ludgate
238fa47bee proxy fix wake compute rate limit (#7902)
## Problem

We were rate limiting wake_compute in the wrong place

## Summary of changes

Move wake_compute rate limit to after the permit is acquired. Also makes
a slight refactor on normalize, as it caught my eye
2024-05-30 11:09:27 +01:00
a-masterov
b0a954bde2 CI: switch ubuntu-latest with ubuntu-22.04 (#7256) (#7901)
## Problem
We use ubuntu-latest as a default OS for running jobs. It can cause
problems due to instability, so we should use the LTS version of Ubuntu.

## Summary of changes
The image ubuntu-latest was changed with ubuntu-22.04 in workflows.

## Checklist before requesting a review

- [x] I have performed a self-review of my code.
- [ ] If it is a core feature, I have added thorough tests.
- [ ] Do we need to implement analytics? if so did you add the relevant
metrics to the dashboard?
- [ ] If this PR requires public announcement, mark it with
/release-notes label and add several sentences in this section.

## Checklist before merging

- [ ] Do not forget to reformat commit message to not include the above
checklist
2024-05-30 08:25:10 +02:00
Konstantin Knizhnik
7ac11d3942 Do not produce error if gin page is not restored in redo (#7876)
## Problem

See https://github.com/neondatabase/cloud/issues/10845

## Summary of changes

Do not report error if GIN page is not restored

## Checklist before requesting a review

- [ ] I have performed a self-review of my code.
- [ ] If it is a core feature, I have added thorough tests.
- [ ] Do we need to implement analytics? if so did you add the relevant
metrics to the dashboard?
- [ ] If this PR requires public announcement, mark it with
/release-notes label and add several sentences in this section.

## Checklist before merging

- [ ] Do not forget to reformat commit message to not include the above
checklist

---------

Co-authored-by: Konstantin Knizhnik <knizhnik@neon.tech>
2024-05-29 22:18:09 +03:00
Conrad Ludgate
c8cebecabf proxy: reintroduce dynamic limiter for compute lock (#7737)
## Problem

Computes that are healthy can manage many connection attempts at a time.
Unhealthy computes cannot. We initially handled this with a fixed
concurrency limit, but it seems this inhibits pgbench.

## Summary of changes

Support AIMD for connect_to_compute lock to allow varying the
concurrency limit based on compute health
2024-05-29 11:17:05 +01:00
Arpad Müller
14df69d0e3 Drop postgres-native-tls in favour of tokio-postgres-rustls (#7883)
Get rid of postgres-native-tls and openssl in favour of rustls in our
dependency tree.

Do further steps to completely remove native-tls and openssl.

Among other advantages, this allows us to do static musl builds more
easily: #7889
2024-05-28 15:40:52 +00:00
John Spray
352b08d0be pageserver: fix a warning on secondary mode downloads after evictions (#7877)
## Problem

In 4ce6e2d2fc we added a warning when progress stats don't look right at
the end of a secondary download pass.

This `Correcting drift in progress stats` warning fired in staging on a
pageserver that had been doing some disk usage eviction.

The impact is low because in the same place we log the warning, we also
fix up the progress values.

## Summary of changes

- When we skip downloading a layer because it was recently evicted,
update the progress stats to ensure they still reach a clean complete
state at the end of a download pass.
- Also add a log for evicting secondary location layers, for symmetry
with attached locations, so that we can clearly see when eviction has
happened for a particular tenant's layers when investigating issues.

This is a point fix -- the code would also benefit from being refactored
so that there is some "download result" type with a Skip variant, to
ensure that we are updating the progress stats uniformly for those
cases.
2024-05-28 16:06:47 +01:00
Peter Bendel
f9f69a2ee7 clarify how to load the dbpedia vector embeddings into a postgres database (#7894)
## Problem


Improve the readme for the data load step in the pgvector performance
test.
2024-05-28 17:21:09 +03:00
Peter Bendel
fabeff822f Performance test for pgvector HNSW index build and queries (#7873)
## Problem

We want to regularly verify the performance of pgvector HNSW parallel
index builds and parallel similarity search using HNSW indexes.
The first release that considerably improved the index-build parallelism
was pgvector 0.7.0 and we want to make sure that we do not regress by
our neon compute VM settings (swap, memory over commit, pg conf etc.)

## Summary of changes

Prepare a Neon project with 1 million openAI vector embeddings (vector
size 1536).
Run HNSW indexing operations in the regression test for the various
distance metrics.
Run similarity queries using pgbench with 100 concurrent clients.

I have also added the relevant metrics to the grafana dashboards pgbench
and olape

---------

Co-authored-by: Alexander Bayandin <alexander@neon.tech>
2024-05-28 11:05:33 +00:00
Arseny Sher
4a0ce9512b Add safekeeper test truncating WAL.
We do it as a part of more complicated tests like test_compute_restarts, but
let's have a simple test as well.
2024-05-28 11:08:29 +03:00
Konstantin Knizhnik
d61e924103 Fix connect to PS on MacOS/X (#7885)
## Problem

After [0e4f182680] which introduce async
connect
Neon is not able to connect to page server.

## Summary of changes

Perform sync commit at MacOS/X

## Checklist before requesting a review

- [ ] I have performed a self-review of my code.
- [ ] If it is a core feature, I have added thorough tests.
- [ ] Do we need to implement analytics? if so did you add the relevant
metrics to the dashboard?
- [ ] If this PR requires public announcement, mark it with
/release-notes label and add several sentences in this section.

## Checklist before merging

- [ ] Do not forget to reformat commit message to not include the above
checklist

---------

Co-authored-by: Konstantin Knizhnik <knizhnik@neon.tech>
2024-05-27 15:57:57 +03:00
Arseny Sher
b2d34a82b9 Make python Safekeeper datadir Path instead of str. 2024-05-25 06:06:32 +03:00
Arseny Sher
3797566c36 safekeeper: test pull_timeline with WAL gc.
Do pull_timeline while WAL is being removed. To this end
- extract pausable_failpoint to utils, sprinkle pull_timeline with it
- add 'checkpoint' sk http endpoint to force WAL removal.

After fixing checking for pull file status code test fails so far which is
expected.
2024-05-25 06:06:32 +03:00