Merge pull request #10288 from neondatabase/rc/release-compute/2025-01-07

Compute release 2025-01-07

.cargo/config.toml

@@ -3,6 +3,16 @@
 # by the RUSTDOCFLAGS env var in CI.
 rustdocflags = ["-Arustdoc::private_intra_doc_links"]
 
+# Enable frame pointers. This may have a minor performance overhead, but makes it easier and more
+# efficient to obtain stack traces (and thus CPU/heap profiles). It may also avoid seg faults that
+# we've seen with libunwind-based profiling. See also:
+#
+# * <https://www.brendangregg.com/blog/2024-03-17/the-return-of-the-frame-pointers.html>
+# * <https://github.com/rust-lang/rust/pull/122646>
+#
+# NB: the RUSTFLAGS envvar will replace this. Make sure to update e.g. Dockerfile as well.
+rustflags = ["-Cforce-frame-pointers=yes"]
+
 [alias]
 build_testing = ["build", "--features", "testing"]
 neon = ["run", "--bin", "neon_local"]

.github/workflows/actionlint.yml

@@ -33,7 +33,7 @@ jobs:
           # SC2086 - Double quote to prevent globbing and word splitting. - https://www.shellcheck.net/wiki/SC2086
           SHELLCHECK_OPTS: --exclude=SC2046,SC2086
         with:
-          fail_on_error: true
+          fail_level: error
           filter_mode: nofilter
           level: error
 

.github/workflows/build_and_test.yml

@@ -538,7 +538,7 @@ jobs:
 
   trigger-e2e-tests:
     if: ${{ !github.event.pull_request.draft || contains( github.event.pull_request.labels.*.name, 'run-e2e-tests-in-draft') || github.ref_name == 'main' || github.ref_name == 'release' || github.ref_name == 'release-proxy' || github.ref_name == 'release-compute' }}
-    needs: [ check-permissions, promote-images, tag ]
+    needs: [ check-permissions, promote-images-dev, tag ]
     uses: ./.github/workflows/trigger-e2e-tests.yml
     secrets: inherit
 
@@ -930,8 +930,8 @@ jobs:
           docker compose -f ./docker-compose/docker-compose.yml logs || 0
           docker compose -f ./docker-compose/docker-compose.yml down
 
-  promote-images:
-    needs: [ check-permissions, tag, test-images, vm-compute-node-image ]
+  promote-images-dev:
+    needs: [ check-permissions, tag, vm-compute-node-image ]
     runs-on: ubuntu-22.04
 
     permissions:
@@ -965,6 +965,35 @@ jobs:
                                                neondatabase/vm-compute-node-${version}:${{ needs.tag.outputs.build-tag }}
           done
 
+  promote-images-prod:
+    needs: [ check-permissions, tag, test-images, vm-compute-node-image ]
+    runs-on: ubuntu-22.04
+    if: github.ref_name == 'main' || github.ref_name == 'release' || github.ref_name == 'release-proxy' || github.ref_name == 'release-compute'
+
+    permissions:
+      id-token: write # aws-actions/configure-aws-credentials
+      statuses: write
+      contents: read
+
+    env:
+      VERSIONS: v14 v15 v16 v17
+
+    steps:
+      - name: Configure AWS credentials
+        uses: aws-actions/configure-aws-credentials@v4
+        with:
+          aws-region: eu-central-1
+          role-to-assume: ${{ vars.DEV_AWS_OIDC_ROLE_ARN }}
+          role-duration-seconds: 3600
+
+      - name: Login to Amazon Dev ECR
+        uses: aws-actions/amazon-ecr-login@v2
+
+      - uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.NEON_DOCKERHUB_USERNAME }}
+          password: ${{ secrets.NEON_DOCKERHUB_PASSWORD }}
+
       - name: Add latest tag to images
         if: github.ref_name == 'main'
         run: |
@@ -1010,7 +1039,7 @@ jobs:
 
   push-to-acr-dev:
     if: github.ref_name == 'main'
-    needs: [ tag, promote-images ]
+    needs: [ tag, promote-images-dev ]
     uses: ./.github/workflows/_push-to-acr.yml
     with:
       client_id: ${{ vars.AZURE_DEV_CLIENT_ID }}
@@ -1022,7 +1051,7 @@ jobs:
 
   push-to-acr-prod:
     if: github.ref_name == 'release' || github.ref_name == 'release-proxy' || github.ref_name == 'release-compute'
-    needs: [ tag, promote-images ]
+    needs: [ tag, promote-images-prod ]
     uses: ./.github/workflows/_push-to-acr.yml
     with:
       client_id: ${{ vars.AZURE_PROD_CLIENT_ID }}
@@ -1112,7 +1141,7 @@ jobs:
           exit 1
 
   deploy:
-    needs: [ check-permissions, promote-images, tag, build-and-test-locally, trigger-custom-extensions-build-and-wait, push-to-acr-dev, push-to-acr-prod ]
+    needs: [ check-permissions, promote-images-prod, tag, build-and-test-locally, trigger-custom-extensions-build-and-wait, push-to-acr-dev, push-to-acr-prod ]
     # `!failure() && !cancelled()` is required because the workflow depends on the job that can be skipped: `push-to-acr-dev` and `push-to-acr-prod`
     if: (github.ref_name == 'main' || github.ref_name == 'release' || github.ref_name == 'release-proxy' || github.ref_name == 'release-compute') && !failure() && !cancelled()
     permissions:
@@ -1333,7 +1362,7 @@ jobs:
           done
 
   pin-build-tools-image:
-    needs: [ build-build-tools-image, promote-images, build-and-test-locally ]
+    needs: [ build-build-tools-image, promote-images-prod, build-and-test-locally ]
     if: github.ref_name == 'main'
     uses: ./.github/workflows/pin-build-tools-image.yml
     with:
@@ -1356,7 +1385,7 @@ jobs:
       - build-and-test-locally
       - check-codestyle-python
       - check-codestyle-rust
-      - promote-images
+      - promote-images-dev
       - test-images
       - trigger-custom-extensions-build-and-wait
     runs-on: ubuntu-22.04

.github/workflows/trigger-e2e-tests.yml

@@ -68,7 +68,7 @@ jobs:
       GH_TOKEN: ${{ secrets.CI_ACCESS_TOKEN }}
       TAG: ${{ needs.tag.outputs.build-tag }}
     steps:
-      - name: Wait for `promote-images` job to finish
+      - name: Wait for `promote-images-dev` job to finish
         # It's important to have a timeout here, the script in the step can run infinitely
         timeout-minutes: 60
         run: |
@@ -79,17 +79,17 @@ jobs:
           # For PRs we use the run id as the tag
           BUILD_AND_TEST_RUN_ID=${TAG}
           while true; do
-            conclusion=$(gh run --repo ${GITHUB_REPOSITORY} view ${BUILD_AND_TEST_RUN_ID} --json jobs --jq '.jobs[] | select(.name == "promote-images") | .conclusion')
+            conclusion=$(gh run --repo ${GITHUB_REPOSITORY} view ${BUILD_AND_TEST_RUN_ID} --json jobs --jq '.jobs[] | select(.name == "promote-images-dev") | .conclusion')
             case "$conclusion" in
               success)
                 break
                 ;;
               failure | cancelled | skipped)
-                echo "The 'promote-images' job didn't succeed: '${conclusion}'. Exiting..."
+                echo "The 'promote-images-dev' job didn't succeed: '${conclusion}'. Exiting..."
                 exit 1
                 ;;
               *)
-                echo "The 'promote-images' hasn't succeed yet. Waiting..."
+                echo "The 'promote-images-dev' hasn't succeed yet. Waiting..."
                 sleep 60
                 ;;
             esac

Cargo.lock

@@ -1274,6 +1274,7 @@ dependencies = [
  "chrono",
  "clap",
  "compute_api",
+ "fail",
  "flate2",
  "futures",
  "hyper 0.14.30",
@@ -1732,9 +1733,9 @@ checksum = "ab03c107fafeb3ee9f5925686dbb7a73bc76e3932abb0d2b365cb64b169cf04c"
 
 [[package]]
 name = "diesel"
-version = "2.2.3"
+version = "2.2.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "65e13bab2796f412722112327f3e575601a3e9cdcbe426f0d30dbf43f3f5dc71"
+checksum = "ccf1bedf64cdb9643204a36dd15b19a6ce8e7aa7f7b105868e9f1fad5ffa7d12"
 dependencies = [
  "bitflags 2.4.1",
  "byteorder",
@@ -4493,9 +4494,9 @@ checksum = "5b40af805b3121feab8a3c29f04d8ad262fa8e0561883e7653e024ae4479e6de"
 
 [[package]]
 name = "pq-sys"
-version = "0.4.8"
+version = "0.6.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "31c0052426df997c0cbd30789eb44ca097e3541717a7b8fa36b1c464ee7edebd"
+checksum = "f6cc05d7ea95200187117196eee9edd0644424911821aeb28a18ce60ea0b8793"
 dependencies = [
  "vcpkg",
 ]

Cargo.toml

@@ -135,7 +135,7 @@ parquet = { version = "53", default-features = false, features = ["zstd"] }
 parquet_derive = "53"
 pbkdf2 = { version = "0.12.1", features = ["simple", "std"] }
 pin-project-lite = "0.2"
-pprof = { version = "0.14", features = ["criterion", "flamegraph", "protobuf", "protobuf-codec"] }
+pprof = { version = "0.14", features = ["criterion", "flamegraph", "frame-pointer", "protobuf", "protobuf-codec"] }
 procfs = "0.16"
 prometheus = {version = "0.13", default-features=false, features = ["process"]} # removes protobuf dependency
 prost = "0.13"
@@ -266,6 +266,8 @@ tokio-postgres = { git = "https://github.com/neondatabase/rust-postgres.git", br
 [profile.release]
 # This is useful for profiling and, to some extent, debug.
 # Besides, debug info should not affect the performance.
+#
+# NB: we also enable frame pointers for improved profiling, see .cargo/config.toml.
 debug = true
 
 # disable debug symbols for all packages except this one to decrease binaries size

Dockerfile

@@ -45,7 +45,7 @@ COPY --chown=nonroot . .
 
 ARG ADDITIONAL_RUSTFLAGS
 RUN set -e \
-    && PQ_LIB_DIR=$(pwd)/pg_install/v${STABLE_PG_VERSION}/lib RUSTFLAGS="-Clinker=clang -Clink-arg=-fuse-ld=mold -Clink-arg=-Wl,--no-rosegment ${ADDITIONAL_RUSTFLAGS}" cargo build \
+    && PQ_LIB_DIR=$(pwd)/pg_install/v${STABLE_PG_VERSION}/lib RUSTFLAGS="-Clinker=clang -Clink-arg=-fuse-ld=mold -Clink-arg=-Wl,--no-rosegment -Cforce-frame-pointers=yes ${ADDITIONAL_RUSTFLAGS}" cargo build \
       --bin pg_sni_router  \
       --bin pageserver  \
       --bin pagectl  \
@@ -69,6 +69,8 @@ RUN set -e \
         libreadline-dev \
         libseccomp-dev \
         ca-certificates \
+	# System postgres for use with client libraries (e.g. in storage controller)
+        postgresql-15 \
     && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* \
     && useradd -d /data neon \
     && chown -R neon:neon /data

compute_tools/Cargo.toml

@@ -7,7 +7,7 @@ license.workspace = true
 [features]
 default = []
 # Enables test specific features.
-testing = []
+testing = ["fail/failpoints"]
 
 [dependencies]
 base64.workspace = true
@@ -19,6 +19,7 @@ camino.workspace = true
 chrono.workspace = true
 cfg-if.workspace = true
 clap.workspace = true
+fail.workspace = true
 flate2.workspace = true
 futures.workspace = true
 hyper0 = { workspace = true, features = ["full"] }

compute_tools/src/bin/compute_ctl.rs

@@ -67,12 +67,15 @@ use compute_tools::params::*;
 use compute_tools::spec::*;
 use compute_tools::swap::resize_swap;
 use rlimit::{setrlimit, Resource};
+use utils::failpoint_support;
 
 // this is an arbitrary build tag. Fine as a default / for testing purposes
 // in-case of not-set environment var
 const BUILD_TAG_DEFAULT: &str = "latest";
 
 fn main() -> Result<()> {
+    let scenario = failpoint_support::init();
+
     let (build_tag, clap_args) = init()?;
 
     // enable core dumping for all child processes
@@ -100,6 +103,8 @@ fn main() -> Result<()> {
 
     maybe_delay_exit(delay_exit);
 
+    scenario.teardown();
+
     deinit_and_exit(wait_pg_result);
 }
 
@@ -419,9 +424,14 @@ fn start_postgres(
         "running compute with features: {:?}",
         state.pspec.as_ref().unwrap().spec.features
     );
-    // before we release the mutex, fetch the swap size (if any) for later.
-    let swap_size_bytes = state.pspec.as_ref().unwrap().spec.swap_size_bytes;
-    let disk_quota_bytes = state.pspec.as_ref().unwrap().spec.disk_quota_bytes;
+    // before we release the mutex, fetch some parameters for later.
+    let &ComputeSpec {
+        swap_size_bytes,
+        disk_quota_bytes,
+        #[cfg(target_os = "linux")]
+        disable_lfc_resizing,
+        ..
+    } = &state.pspec.as_ref().unwrap().spec;
     drop(state);
 
     // Launch remaining service threads
@@ -526,11 +536,18 @@ fn start_postgres(
             // This token is used internally by the monitor to clean up all threads
             let token = CancellationToken::new();
 
+            // don't pass postgres connection string to vm-monitor if we don't want it to resize LFC
+            let pgconnstr = if disable_lfc_resizing.unwrap_or(false) {
+                None
+            } else {
+                file_cache_connstr.cloned()
+            };
+
             let vm_monitor = rt.as_ref().map(|rt| {
                 rt.spawn(vm_monitor::start(
                     Box::leak(Box::new(vm_monitor::Args {
                         cgroup: cgroup.cloned(),
-                        pgconnstr: file_cache_connstr.cloned(),
+                        pgconnstr,
                         addr: vm_monitor_addr.clone(),
                     })),
                     token.clone(),

compute_tools/src/compute.rs

@@ -1181,8 +1181,19 @@ impl ComputeNode {
             let mut conf = postgres::config::Config::from(conf);
             conf.application_name("compute_ctl:migrations");
 
-            let mut client = conf.connect(NoTls)?;
-            handle_migrations(&mut client).context("apply_config handle_migrations")
+            match conf.connect(NoTls) {
+                Ok(mut client) => {
+                    if let Err(e) = handle_migrations(&mut client) {
+                        error!("Failed to run migrations: {}", e);
+                    }
+                }
+                Err(e) => {
+                    error!(
+                        "Failed to connect to the compute for running migrations: {}",
+                        e
+                    );
+                }
+            };
         });
 
         Ok::<(), anyhow::Error>(())

compute_tools/src/http/api.rs

@@ -24,8 +24,11 @@ use metrics::proto::MetricFamily;
 use metrics::Encoder;
 use metrics::TextEncoder;
 use tokio::task;
+use tokio_util::sync::CancellationToken;
 use tracing::{debug, error, info, warn};
 use tracing_utils::http::OtelName;
+use utils::failpoint_support::failpoints_handler;
+use utils::http::error::ApiError;
 use utils::http::request::must_get_query_param;
 
 fn status_response_from_state(state: &ComputeState) -> ComputeStatusResponse {
@@ -310,6 +313,18 @@ async fn routes(req: Request<Body>, compute: &Arc<ComputeNode>) -> Response<Body
             }
         }
 
+        (&Method::POST, "/failpoints") if cfg!(feature = "testing") => {
+            match failpoints_handler(req, CancellationToken::new()).await {
+                Ok(r) => r,
+                Err(ApiError::BadRequest(e)) => {
+                    render_json_error(&e.to_string(), StatusCode::BAD_REQUEST)
+                }
+                Err(_) => {
+                    render_json_error("Internal server error", StatusCode::INTERNAL_SERVER_ERROR)
+                }
+            }
+        }
+
         // download extension files from remote extension storage on demand
         (&Method::POST, route) if route.starts_with("/extension_server/") => {
             info!("serving {:?} POST request", route);

compute_tools/src/migration.rs

@@ -1,13 +1,16 @@
 use anyhow::{Context, Result};
+use fail::fail_point;
 use postgres::Client;
 use tracing::info;
 
+/// Runs a series of migrations on a target database
 pub(crate) struct MigrationRunner<'m> {
     client: &'m mut Client,
     migrations: &'m [&'m str],
 }
 
 impl<'m> MigrationRunner<'m> {
+    /// Create a new migration runner
     pub fn new(client: &'m mut Client, migrations: &'m [&'m str]) -> Self {
         // The neon_migration.migration_id::id column is a bigint, which is equivalent to an i64
         assert!(migrations.len() + 1 < i64::MAX as usize);
@@ -15,6 +18,7 @@ impl<'m> MigrationRunner<'m> {
         Self { client, migrations }
     }
 
+    /// Get the current value neon_migration.migration_id
     fn get_migration_id(&mut self) -> Result<i64> {
         let query = "SELECT id FROM neon_migration.migration_id";
         let row = self
@@ -25,37 +29,61 @@ impl<'m> MigrationRunner<'m> {
         Ok(row.get::<&str, i64>("id"))
     }
 
+    /// Update the neon_migration.migration_id value
+    ///
+    /// This function has a fail point called compute-migration, which can be
+    /// used if you would like to fail the application of a series of migrations
+    /// at some point.
     fn update_migration_id(&mut self, migration_id: i64) -> Result<()> {
-        let setval = format!("UPDATE neon_migration.migration_id SET id={}", migration_id);
+        // We use this fail point in order to check that failing in the
+        // middle of applying a series of migrations fails in an expected
+        // manner
+        if cfg!(feature = "testing") {
+            let fail = (|| {
+                fail_point!("compute-migration", |fail_migration_id| {
+                    migration_id == fail_migration_id.unwrap().parse::<i64>().unwrap()
+                });
+
+                false
+            })();
+
+            if fail {
+                return Err(anyhow::anyhow!(format!(
+                    "migration {} was configured to fail because of a failpoint",
+                    migration_id
+                )));
+            }
+        }
 
         self.client
-            .simple_query(&setval)
+            .query(
+                "UPDATE neon_migration.migration_id SET id = $1",
+                &[&migration_id],
+            )
             .context("run_migrations update id")?;
 
         Ok(())
     }
 
-    fn prepare_migrations(&mut self) -> Result<()> {
-        let query = "CREATE SCHEMA IF NOT EXISTS neon_migration";
-        self.client.simple_query(query)?;
-
-        let query = "CREATE TABLE IF NOT EXISTS neon_migration.migration_id (key INT NOT NULL PRIMARY KEY, id bigint NOT NULL DEFAULT 0)";
-        self.client.simple_query(query)?;
-
-        let query = "INSERT INTO neon_migration.migration_id VALUES (0, 0) ON CONFLICT DO NOTHING";
-        self.client.simple_query(query)?;
-
-        let query = "ALTER SCHEMA neon_migration OWNER TO cloud_admin";
-        self.client.simple_query(query)?;
-
-        let query = "REVOKE ALL ON SCHEMA neon_migration FROM PUBLIC";
-        self.client.simple_query(query)?;
+    /// Prepare the migrations the target database for handling migrations
+    fn prepare_database(&mut self) -> Result<()> {
+        self.client
+            .simple_query("CREATE SCHEMA IF NOT EXISTS neon_migration")?;
+        self.client.simple_query("CREATE TABLE IF NOT EXISTS neon_migration.migration_id (key INT NOT NULL PRIMARY KEY, id bigint NOT NULL DEFAULT 0)")?;
+        self.client.simple_query(
+            "INSERT INTO neon_migration.migration_id VALUES (0, 0) ON CONFLICT DO NOTHING",
+        )?;
+        self.client
+            .simple_query("ALTER SCHEMA neon_migration OWNER TO cloud_admin")?;
+        self.client
+            .simple_query("REVOKE ALL ON SCHEMA neon_migration FROM PUBLIC")?;
 
         Ok(())
     }
 
+    /// Run the configrured set of migrations
     pub fn run_migrations(mut self) -> Result<()> {
-        self.prepare_migrations()?;
+        self.prepare_database()?;
 
         let mut current_migration = self.get_migration_id()? as usize;
         while current_migration < self.migrations.len() {
@@ -69,6 +97,11 @@ impl<'m> MigrationRunner<'m> {
 
             if migration.starts_with("-- SKIP") {
                 info!("Skipping migration id={}", migration_id!(current_migration));
+
+                // Even though we are skipping the migration, updating the
+                // migration ID should help keep logic easy to understand when
+                // trying to understand the state of a cluster.
+                self.update_migration_id(migration_id!(current_migration))?;
             } else {
                 info!(
                     "Running migration id={}:\n{}\n",
@@ -87,7 +120,6 @@ impl<'m> MigrationRunner<'m> {
                     )
                 })?;
 
-                // Migration IDs start at 1
                 self.update_migration_id(migration_id!(current_migration))?;
 
                 self.client

compute_tools/src/migrations/tests/0001-neon_superuser_bypass_rls.sql

@@ -0,0 +1,9 @@
+DO $$
+DECLARE
+    bypassrls boolean;
+BEGIN
+    SELECT rolbypassrls INTO bypassrls FROM pg_roles WHERE rolname = 'neon_superuser';
+    IF NOT bypassrls THEN
+        RAISE EXCEPTION 'neon_superuser cannot bypass RLS';
+    END IF;
+END $$;

compute_tools/src/migrations/tests/0002-alter_roles.sql

@@ -0,0 +1,25 @@
+DO $$
+DECLARE
+    role record;
+BEGIN
+    FOR role IN
+        SELECT rolname AS name, rolinherit AS inherit
+        FROM pg_roles
+        WHERE pg_has_role(rolname, 'neon_superuser', 'member')
+    LOOP
+        IF NOT role.inherit THEN
+            RAISE EXCEPTION '% cannot inherit', quote_ident(role.name);
+        END IF;
+    END LOOP;
+
+    FOR role IN
+        SELECT rolname AS name, rolbypassrls AS bypassrls
+        FROM pg_roles
+        WHERE NOT pg_has_role(rolname, 'neon_superuser', 'member')
+            AND NOT starts_with(rolname, 'pg_')
+    LOOP
+        IF role.bypassrls THEN
+            RAISE EXCEPTION  '% can bypass RLS', quote_ident(role.name);
+        END IF;
+    END LOOP;
+END $$;

compute_tools/src/migrations/tests/0003-grant_pg_create_subscription_to_neon_superuser.sql

@@ -0,0 +1,10 @@
+DO $$
+BEGIN
+    IF (SELECT current_setting('server_version_num')::numeric < 160000) THEN
+        RETURN;
+    END IF;
+
+    IF NOT (SELECT pg_has_role('neon_superuser', 'pg_create_subscription', 'member')) THEN
+        RAISE EXCEPTION 'neon_superuser cannot execute pg_create_subscription';
+    END IF;
+END $$;

compute_tools/src/migrations/tests/0004-grant_pg_monitor_to_neon_superuser.sql

@@ -0,0 +1,19 @@
+DO $$
+DECLARE
+    monitor record;
+BEGIN
+    SELECT pg_has_role('neon_superuser', 'pg_monitor', 'member') AS member,
+            admin_option AS admin
+        INTO monitor
+        FROM pg_auth_members
+        WHERE roleid = 'pg_monitor'::regrole
+            AND member = 'pg_monitor'::regrole;
+
+    IF NOT monitor.member THEN
+        RAISE EXCEPTION 'neon_superuser is not a member of pg_monitor';
+    END IF;
+
+    IF NOT monitor.admin THEN
+        RAISE EXCEPTION 'neon_superuser cannot grant pg_monitor';
+    END IF;
+END $$;

compute_tools/src/migrations/tests/0005-grant_all_on_tables_to_neon_superuser.sql

@@ -0,0 +1,2 @@
+-- This test was never written becuase at the time migration tests were added
+-- the accompanying migration was already skipped.

compute_tools/src/migrations/tests/0006-grant_all_on_sequences_to_neon_superuser.sql

@@ -0,0 +1,2 @@
+-- This test was never written becuase at the time migration tests were added
+-- the accompanying migration was already skipped.

compute_tools/src/migrations/tests/0007-grant_all_on_tables_to_neon_superuser_with_grant_option.sql

@@ -0,0 +1,2 @@
+-- This test was never written becuase at the time migration tests were added
+-- the accompanying migration was already skipped.

compute_tools/src/migrations/tests/0008-grant_all_on_sequences_to_neon_superuser_with_grant_option.sql

@@ -0,0 +1,2 @@
+-- This test was never written becuase at the time migration tests were added
+-- the accompanying migration was already skipped.

compute_tools/src/migrations/tests/0009-revoke_replication_for_previously_allowed_roles.sql

@@ -0,0 +1,2 @@
+-- This test was never written becuase at the time migration tests were added
+-- the accompanying migration was already skipped.

compute_tools/src/migrations/tests/0010-grant_snapshot_synchronization_funcs_to_neon_superuser.sql

@@ -0,0 +1,13 @@
+DO $$
+DECLARE
+    can_execute boolean;
+BEGIN
+    SELECT bool_and(has_function_privilege('neon_superuser', oid, 'execute'))
+       INTO can_execute
+       FROM pg_proc
+       WHERE proname IN ('pg_export_snapshot', 'pg_log_standby_snapshot')
+           AND pronamespace = 'pg_catalog'::regnamespace;
+    IF NOT can_execute THEN
+        RAISE EXCEPTION 'neon_superuser cannot execute both pg_export_snapshot and pg_log_standby_snapshot';
+    END IF;
+END $$;

compute_tools/src/migrations/tests/0011-grant_pg_show_replication_origin_status_to_neon_superuser.sql

@@ -0,0 +1,13 @@
+DO $$
+DECLARE
+    can_execute boolean;
+BEGIN
+    SELECT has_function_privilege('neon_superuser', oid, 'execute')
+       INTO can_execute
+       FROM pg_proc
+       WHERE proname = 'pg_show_replication_origin_status'
+           AND pronamespace = 'pg_catalog'::regnamespace;
+    IF NOT can_execute THEN
+        RAISE EXCEPTION 'neon_superuser cannot execute pg_show_replication_origin_status';
+    END IF;
+END $$;

control_plane/src/endpoint.rs

@@ -585,6 +585,7 @@ impl Endpoint {
             features: self.features.clone(),
             swap_size_bytes: None,
             disk_quota_bytes: None,
+            disable_lfc_resizing: None,
             cluster: Cluster {
                 cluster_id: None, // project ID: not used
                 name: None,       // project name: not used

libs/compute_api/src/spec.rs

@@ -67,6 +67,15 @@ pub struct ComputeSpec {
     #[serde(default)]
     pub disk_quota_bytes: Option<u64>,
 
+    /// Disables the vm-monitor behavior that resizes LFC on upscale/downscale, instead relying on
+    /// the initial size of LFC.
+    ///
+    /// This is intended for use when the LFC size is being overridden from the default but
+    /// autoscaling is still enabled, and we don't want the vm-monitor to interfere with the custom
+    /// LFC sizing.
+    #[serde(default)]
+    pub disable_lfc_resizing: Option<bool>,
+
     /// Expected cluster state at the end of transition process.
     pub cluster: Cluster,
     pub delta_operations: Option<Vec<DeltaOp>>,

libs/proxy/tokio-postgres2/src/connect.rs

@@ -1,9 +1,11 @@
 use crate::client::SocketConfig;
+use crate::codec::BackendMessage;
 use crate::config::Host;
 use crate::connect_raw::connect_raw;
 use crate::connect_socket::connect_socket;
 use crate::tls::{MakeTlsConnect, TlsConnect};
 use crate::{Client, Config, Connection, Error, RawConnection};
+use postgres_protocol2::message::backend::Message;
 use tokio::net::TcpStream;
 use tokio::sync::mpsc;
 
@@ -41,7 +43,7 @@ where
     let RawConnection {
         stream,
         parameters,
-        delayed_notice: _,
+        delayed_notice,
         process_id,
         secret_key,
     } = connect_raw(socket, tls, config).await?;
@@ -61,7 +63,13 @@ where
         secret_key,
     );
 
-    let connection = Connection::new(stream, parameters, receiver);
+    // delayed notices are always sent as "Async" messages.
+    let delayed = delayed_notice
+        .into_iter()
+        .map(|m| BackendMessage::Async(Message::NoticeResponse(m)))
+        .collect();
+
+    let connection = Connection::new(stream, delayed, parameters, receiver);
 
     Ok((client, connection))
 }

libs/proxy/tokio-postgres2/src/connection.rs

@@ -1,10 +1,11 @@
 use crate::codec::{BackendMessage, BackendMessages, FrontendMessage, PostgresCodec};
+use crate::error::DbError;
 use crate::maybe_tls_stream::MaybeTlsStream;
 use crate::{AsyncMessage, Error, Notification};
 use bytes::BytesMut;
 use fallible_iterator::FallibleIterator;
 use futures_util::{ready, Sink, Stream};
-use log::trace;
+use log::{info, trace};
 use postgres_protocol2::message::backend::Message;
 use postgres_protocol2::message::frontend;
 use std::collections::{HashMap, VecDeque};
@@ -54,7 +55,7 @@ pub struct Connection<S, T> {
     /// HACK: we need this in the Neon Proxy to forward params.
     pub parameters: HashMap<String, String>,
     receiver: mpsc::UnboundedReceiver<Request>,
-    pending_responses: Option<BackendMessage>,
+    pending_responses: VecDeque<BackendMessage>,
     responses: VecDeque<Response>,
     state: State,
 }
@@ -66,6 +67,7 @@ where
 {
     pub(crate) fn new(
         stream: Framed<MaybeTlsStream<S, T>, PostgresCodec>,
+        pending_responses: VecDeque<BackendMessage>,
         parameters: HashMap<String, String>,
         receiver: mpsc::UnboundedReceiver<Request>,
     ) -> Connection<S, T> {
@@ -73,7 +75,7 @@ where
             stream,
             parameters,
             receiver,
-            pending_responses: None,
+            pending_responses,
             responses: VecDeque::new(),
             state: State::Active,
         }
@@ -83,7 +85,7 @@ where
         &mut self,
         cx: &mut Context<'_>,
     ) -> Poll<Option<Result<BackendMessage, Error>>> {
-        if let Some(message) = self.pending_responses.take() {
+        if let Some(message) = self.pending_responses.pop_front() {
             trace!("retrying pending response");
             return Poll::Ready(Some(Ok(message)));
         }
@@ -107,8 +109,9 @@ where
             };
 
             let (mut messages, request_complete) = match message {
-                BackendMessage::Async(Message::NoticeResponse(_)) => {
-                    continue;
+                BackendMessage::Async(Message::NoticeResponse(body)) => {
+                    let error = DbError::parse(&mut body.fields()).map_err(Error::parse)?;
+                    return Poll::Ready(Ok(AsyncMessage::Notice(error)));
                 }
                 BackendMessage::Async(Message::NotificationResponse(body)) => {
                     let notification = Notification {
@@ -157,7 +160,7 @@ where
                 }
                 Poll::Pending => {
                     self.responses.push_front(response);
-                    self.pending_responses = Some(BackendMessage::Normal {
+                    self.pending_responses.push_back(BackendMessage::Normal {
                         messages,
                         request_complete,
                     });
@@ -325,7 +328,11 @@ where
     type Output = Result<(), Error>;
 
     fn poll(mut self: Pin<&mut Self>, cx: &mut Context<'_>) -> Poll<Result<(), Error>> {
-        while ready!(self.poll_message(cx)?).is_some() {}
+        while let Some(message) = ready!(self.poll_message(cx)?) {
+            if let AsyncMessage::Notice(notice) = message {
+                info!("{}: {}", notice.severity(), notice.message());
+            }
+        }
         Poll::Ready(Ok(()))
     }
 }

libs/proxy/tokio-postgres2/src/lib.rs

@@ -6,6 +6,7 @@ pub use crate::client::{Client, SocketConfig};
 pub use crate::config::Config;
 pub use crate::connect_raw::RawConnection;
 pub use crate::connection::Connection;
+use crate::error::DbError;
 pub use crate::error::Error;
 pub use crate::generic_client::GenericClient;
 pub use crate::query::RowStream;
@@ -99,6 +100,10 @@ impl Notification {
 #[derive(Debug, Clone)]
 #[non_exhaustive]
 pub enum AsyncMessage {
+    /// A notice.
+    ///
+    /// Notices use the same format as errors, but aren't "errors" per-se.
+    Notice(DbError),
     /// A notification.
     ///
     /// Connections can subscribe to notifications with the `LISTEN` command.

libs/utils/src/failpoint_support.rs

@@ -9,7 +9,7 @@ use serde::{Deserialize, Serialize};
 use tokio_util::sync::CancellationToken;
 use tracing::*;
 
-/// Declare a failpoint that can use the `pause` failpoint action.
+/// Declare a failpoint that can use to `pause` failpoint action.
 /// We don't want to block the executor thread, hence, spawn_blocking + await.
 #[macro_export]
 macro_rules! pausable_failpoint {
@@ -181,7 +181,7 @@ pub async fn failpoints_handler(
 ) -> Result<Response<Body>, ApiError> {
     if !fail::has_failpoints() {
         return Err(ApiError::BadRequest(anyhow::anyhow!(
-            "Cannot manage failpoints because storage was compiled without failpoints support"
+            "Cannot manage failpoints because neon was compiled without failpoints support"
         )));
     }
 

pageserver/src/bin/pageserver.rs

@@ -53,10 +53,12 @@ project_build_tag!(BUILD_TAG);
 #[global_allocator]
 static GLOBAL: tikv_jemallocator::Jemalloc = tikv_jemallocator::Jemalloc;
 
-/// Configure jemalloc to sample allocations for profiles every 1 MB (1 << 20).
-#[allow(non_upper_case_globals)]
-#[export_name = "malloc_conf"]
-pub static malloc_conf: &[u8] = b"prof:true,prof_active:true,lg_prof_sample:20\0";
+// Configure jemalloc to sample allocations for profiles every 1 MB (1 << 20).
+// TODO: disabled because concurrent CPU profiles cause seg faults. See:
+// https://github.com/neondatabase/neon/issues/10225.
+//#[allow(non_upper_case_globals)]
+//#[export_name = "malloc_conf"]
+//pub static malloc_conf: &[u8] = b"prof:true,prof_active:true,lg_prof_sample:20\0";
 
 const PID_FILE_NAME: &str = "pageserver.pid";
 

pageserver/src/metrics.rs

@@ -3,7 +3,7 @@ use metrics::{
     register_counter_vec, register_gauge_vec, register_histogram, register_histogram_vec,
     register_int_counter, register_int_counter_pair_vec, register_int_counter_vec,
     register_int_gauge, register_int_gauge_vec, register_uint_gauge, register_uint_gauge_vec,
-    Counter, CounterVec, GaugeVec, Histogram, HistogramVec, IntCounter, IntCounterPair,
+    Counter, CounterVec, Gauge, GaugeVec, Histogram, HistogramVec, IntCounter, IntCounterPair,
     IntCounterPairVec, IntCounterVec, IntGauge, IntGaugeVec, UIntGauge, UIntGaugeVec,
 };
 use once_cell::sync::Lazy;
@@ -445,6 +445,15 @@ pub(crate) static WAIT_LSN_TIME: Lazy<Histogram> = Lazy::new(|| {
     .expect("failed to define a metric")
 });
 
+static FLUSH_WAIT_UPLOAD_TIME: Lazy<GaugeVec> = Lazy::new(|| {
+    register_gauge_vec!(
+        "pageserver_flush_wait_upload_seconds",
+        "Time spent waiting for preceding uploads during layer flush",
+        &["tenant_id", "shard_id", "timeline_id"]
+    )
+    .expect("failed to define a metric")
+});
+
 static LAST_RECORD_LSN: Lazy<IntGaugeVec> = Lazy::new(|| {
     register_int_gauge_vec!(
         "pageserver_last_record_lsn",
@@ -2577,6 +2586,7 @@ pub(crate) struct TimelineMetrics {
     shard_id: String,
     timeline_id: String,
     pub flush_time_histo: StorageTimeMetrics,
+    pub flush_wait_upload_time_gauge: Gauge,
     pub compact_time_histo: StorageTimeMetrics,
     pub create_images_time_histo: StorageTimeMetrics,
     pub logical_size_histo: StorageTimeMetrics,
@@ -2622,6 +2632,9 @@ impl TimelineMetrics {
             &shard_id,
             &timeline_id,
         );
+        let flush_wait_upload_time_gauge = FLUSH_WAIT_UPLOAD_TIME
+            .get_metric_with_label_values(&[&tenant_id, &shard_id, &timeline_id])
+            .unwrap();
         let compact_time_histo = StorageTimeMetrics::new(
             StorageTimeOperation::Compact,
             &tenant_id,
@@ -2767,6 +2780,7 @@ impl TimelineMetrics {
             shard_id,
             timeline_id,
             flush_time_histo,
+            flush_wait_upload_time_gauge,
             compact_time_histo,
             create_images_time_histo,
             logical_size_histo,
@@ -2816,6 +2830,14 @@ impl TimelineMetrics {
         self.resident_physical_size_gauge.get()
     }
 
+    pub(crate) fn flush_wait_upload_time_gauge_add(&self, duration: f64) {
+        self.flush_wait_upload_time_gauge.add(duration);
+        crate::metrics::FLUSH_WAIT_UPLOAD_TIME
+            .get_metric_with_label_values(&[&self.tenant_id, &self.shard_id, &self.timeline_id])
+            .unwrap()
+            .add(duration);
+    }
+
     pub(crate) fn shutdown(&self) {
         let was_shutdown = self
             .shutdown
@@ -2833,6 +2855,7 @@ impl TimelineMetrics {
         let shard_id = &self.shard_id;
         let _ = LAST_RECORD_LSN.remove_label_values(&[tenant_id, shard_id, timeline_id]);
         let _ = DISK_CONSISTENT_LSN.remove_label_values(&[tenant_id, shard_id, timeline_id]);
+        let _ = FLUSH_WAIT_UPLOAD_TIME.remove_label_values(&[tenant_id, shard_id, timeline_id]);
         let _ = STANDBY_HORIZON.remove_label_values(&[tenant_id, shard_id, timeline_id]);
         {
             RESIDENT_PHYSICAL_SIZE_GLOBAL.sub(self.resident_physical_size_get());

pageserver/src/tenant.rs

@@ -2604,9 +2604,15 @@ impl Tenant {
                 WaitCompletionError::NotInitialized(
                     e, // If the queue is already stopped, it's a shutdown error.
                 ) if e.is_stopping() => CreateTimelineError::ShuttingDown,
-                e => CreateTimelineError::Other(e.into()),
-            })
-            .context("wait for timeline initial uploads to complete")?;
+                WaitCompletionError::NotInitialized(_) => {
+                    // This is a bug: we should never try to wait for uploads before initializing the timeline
+                    debug_assert!(false);
+                    CreateTimelineError::Other(anyhow::anyhow!("timeline not initialized"))
+                }
+                WaitCompletionError::UploadQueueShutDownOrStopped => {
+                    CreateTimelineError::ShuttingDown
+                }
+            })?;
 
         // The creating task is responsible for activating the timeline.
         // We do this after `wait_completion()` so that we don't spin up tasks that start
@@ -4482,13 +4488,17 @@ impl Tenant {
         let mut gc_cutoffs: HashMap<TimelineId, GcCutoffs> =
             HashMap::with_capacity(timelines.len());
 
+        // Ensures all timelines use the same start time when computing the time cutoff.
+        let now_ts_for_pitr_calc = SystemTime::now();
         for timeline in timelines.iter() {
             let cutoff = timeline
                 .get_last_record_lsn()
                 .checked_sub(horizon)
                 .unwrap_or(Lsn(0));
 
-            let cutoffs = timeline.find_gc_cutoffs(cutoff, pitr, cancel, ctx).await?;
+            let cutoffs = timeline
+                .find_gc_cutoffs(now_ts_for_pitr_calc, cutoff, pitr, cancel, ctx)
+                .await?;
             let old = gc_cutoffs.insert(timeline.timeline_id, cutoffs);
             assert!(old.is_none());
         }

pageserver/src/tenant/remote_timeline_client.rs

@@ -1943,6 +1943,30 @@ impl RemoteTimelineClient {
                 return;
             }
 
+            // Assert that we don't modify a layer that's referenced by the current index.
+            if cfg!(debug_assertions) {
+                let modified = match &task.op {
+                    UploadOp::UploadLayer(layer, layer_metadata, _) => {
+                        vec![(layer.layer_desc().layer_name(), layer_metadata)]
+                    }
+                    UploadOp::Delete(delete) => {
+                        delete.layers.iter().map(|(n, m)| (n.clone(), m)).collect()
+                    }
+                    // These don't modify layers.
+                    UploadOp::UploadMetadata { .. } => Vec::new(),
+                    UploadOp::Barrier(_) => Vec::new(),
+                    UploadOp::Shutdown => Vec::new(),
+                };
+                if let Ok(queue) = self.upload_queue.lock().unwrap().initialized_mut() {
+                    for (ref name, metadata) in modified {
+                        debug_assert!(
+                            !queue.clean.0.references(name, metadata),
+                            "layer {name} modified while referenced by index",
+                        );
+                    }
+                }
+            }
+
             let upload_result: anyhow::Result<()> = match &task.op {
                 UploadOp::UploadLayer(ref layer, ref layer_metadata, mode) => {
                     if let Some(OpType::FlushDeletion) = mode {
@@ -2509,6 +2533,21 @@ pub fn remote_layer_path(
     RemotePath::from_string(&path).expect("Failed to construct path")
 }
 
+/// Returns true if a and b have the same layer path within a tenant/timeline. This is essentially
+/// remote_layer_path(a) == remote_layer_path(b) without the string allocations.
+///
+/// TODO: there should be a variant of LayerName for the physical path that contains information
+/// about the shard and generation, such that this could be replaced by a simple comparison.
+pub fn is_same_remote_layer_path(
+    aname: &LayerName,
+    ameta: &LayerFileMetadata,
+    bname: &LayerName,
+    bmeta: &LayerFileMetadata,
+) -> bool {
+    // NB: don't assert remote_layer_path(a) == remote_layer_path(b); too expensive even for debug.
+    aname == bname && ameta.shard == bmeta.shard && ameta.generation == bmeta.generation
+}
+
 pub fn remote_initdb_archive_path(tenant_id: &TenantId, timeline_id: &TimelineId) -> RemotePath {
     RemotePath::from_string(&format!(
         "tenants/{tenant_id}/{TIMELINES_SEGMENT_NAME}/{timeline_id}/{INITDB_PATH}"

pageserver/src/tenant/remote_timeline_client/index.rs

@@ -8,14 +8,14 @@ use std::collections::HashMap;
 use chrono::NaiveDateTime;
 use pageserver_api::models::AuxFilePolicy;
 use serde::{Deserialize, Serialize};
-use utils::id::TimelineId;
 
+use super::is_same_remote_layer_path;
 use crate::tenant::metadata::TimelineMetadata;
 use crate::tenant::storage_layer::LayerName;
 use crate::tenant::timeline::import_pgdata;
 use crate::tenant::Generation;
 use pageserver_api::shard::ShardIndex;
-
+use utils::id::TimelineId;
 use utils::lsn::Lsn;
 
 /// In-memory representation of an `index_part.json` file
@@ -45,10 +45,8 @@ pub struct IndexPart {
     #[serde(skip_serializing_if = "Option::is_none")]
     pub import_pgdata: Option<import_pgdata::index_part_format::Root>,
 
-    /// Per layer file name metadata, which can be present for a present or missing layer file.
-    ///
-    /// Older versions of `IndexPart` will not have this property or have only a part of metadata
-    /// that latest version stores.
+    /// Layer filenames and metadata. For an index persisted in remote storage, all layers must
+    /// exist in remote storage.
     pub layer_metadata: HashMap<LayerName, LayerFileMetadata>,
 
     /// Because of the trouble of eyeballing the legacy "metadata" field, we copied the
@@ -143,6 +141,17 @@ impl IndexPart {
     pub(crate) fn example() -> Self {
         Self::empty(TimelineMetadata::example())
     }
+
+    /// Returns true if the index contains a reference to the given layer (i.e. file path).
+    ///
+    /// TODO: there should be a variant of LayerName for the physical remote path that contains
+    /// information about the shard and generation, to avoid passing in metadata.
+    pub fn references(&self, name: &LayerName, metadata: &LayerFileMetadata) -> bool {
+        let Some(index_metadata) = self.layer_metadata.get(name) else {
+            return false;
+        };
+        is_same_remote_layer_path(name, metadata, name, index_metadata)
+    }
 }
 
 /// Metadata gathered for each of the layer files.

pageserver/src/tenant/timeline.rs

@@ -144,15 +144,19 @@ use self::layer_manager::LayerManager;
 use self::logical_size::LogicalSize;
 use self::walreceiver::{WalReceiver, WalReceiverConf};
 
-use super::config::TenantConf;
-use super::remote_timeline_client::index::IndexPart;
-use super::remote_timeline_client::RemoteTimelineClient;
-use super::secondary::heatmap::{HeatMapLayer, HeatMapTimeline};
-use super::storage_layer::{LayerFringe, LayerVisibilityHint, ReadableLayer};
-use super::upload_queue::NotInitialized;
-use super::GcError;
 use super::{
-    debug_assert_current_span_has_tenant_and_timeline_id, AttachedTenantConf, MaybeOffloaded,
+    config::TenantConf, storage_layer::LayerVisibilityHint, upload_queue::NotInitialized,
+    MaybeOffloaded,
+};
+use super::{debug_assert_current_span_has_tenant_and_timeline_id, AttachedTenantConf};
+use super::{remote_timeline_client::index::IndexPart, storage_layer::LayerFringe};
+use super::{
+    remote_timeline_client::RemoteTimelineClient, remote_timeline_client::WaitCompletionError,
+    storage_layer::ReadableLayer,
+};
+use super::{
+    secondary::heatmap::{HeatMapLayer, HeatMapTimeline},
+    GcError,
 };
 
 #[cfg(test)]
@@ -3836,6 +3840,24 @@ impl Timeline {
             // release lock on 'layers'
         };
 
+        // Backpressure mechanism: wait with continuation of the flush loop until we have uploaded all layer files.
+        // This makes us refuse ingest until the new layers have been persisted to the remote
+        let start = Instant::now();
+        self.remote_client
+            .wait_completion()
+            .await
+            .map_err(|e| match e {
+                WaitCompletionError::UploadQueueShutDownOrStopped
+                | WaitCompletionError::NotInitialized(
+                    NotInitialized::ShuttingDown | NotInitialized::Stopped,
+                ) => FlushLayerError::Cancelled,
+                WaitCompletionError::NotInitialized(NotInitialized::Uninitialized) => {
+                    FlushLayerError::Other(anyhow!(e).into())
+                }
+            })?;
+        let duration = start.elapsed().as_secs_f64();
+        self.metrics.flush_wait_upload_time_gauge_add(duration);
+
         // FIXME: between create_delta_layer and the scheduling of the upload in `update_metadata_file`,
         // a compaction can delete the file and then it won't be available for uploads any more.
         // We still schedule the upload, resulting in an error, but ideally we'd somehow avoid this
@@ -4837,6 +4859,7 @@ impl Timeline {
 
     async fn find_gc_time_cutoff(
         &self,
+        now: SystemTime,
         pitr: Duration,
         cancel: &CancellationToken,
         ctx: &RequestContext,
@@ -4844,7 +4867,6 @@ impl Timeline {
         debug_assert_current_span_has_tenant_and_timeline_id();
         if self.shard_identity.is_shard_zero() {
             // Shard Zero has SLRU data and can calculate the PITR time -> LSN mapping itself
-            let now = SystemTime::now();
             let time_range = if pitr == Duration::ZERO {
                 humantime::parse_duration(DEFAULT_PITR_INTERVAL).expect("constant is invalid")
             } else {
@@ -4930,6 +4952,7 @@ impl Timeline {
     #[instrument(skip_all, fields(timeline_id=%self.timeline_id))]
     pub(super) async fn find_gc_cutoffs(
         &self,
+        now: SystemTime,
         space_cutoff: Lsn,
         pitr: Duration,
         cancel: &CancellationToken,
@@ -4957,7 +4980,7 @@ impl Timeline {
         // - if PITR interval is set, then this is our cutoff.
         // - if PITR interval is not set, then we do a lookup
         //   based on DEFAULT_PITR_INTERVAL, so that size-based retention does not result in keeping history around permanently on idle databases.
-        let time_cutoff = self.find_gc_time_cutoff(pitr, cancel, ctx).await?;
+        let time_cutoff = self.find_gc_time_cutoff(now, pitr, cancel, ctx).await?;
 
         Ok(match (pitr, time_cutoff) {
             (Duration::ZERO, Some(time_cutoff)) => {

pageserver/src/tenant/timeline/compaction.rs

@@ -1799,6 +1799,24 @@ impl Timeline {
         Ok(())
     }
 
+    /// Get a watermark for gc-compaction, that is the lowest LSN that we can use as the `gc_horizon` for
+    /// the compaction algorithm. It is min(space_cutoff, time_cutoff, latest_gc_cutoff, standby_horizon).
+    /// Leases and retain_lsns are considered in the gc-compaction job itself so we don't need to account for them
+    /// here.
+    pub(crate) fn get_gc_compaction_watermark(self: &Arc<Self>) -> Lsn {
+        let gc_cutoff_lsn = {
+            let gc_info = self.gc_info.read().unwrap();
+            gc_info.min_cutoff()
+        };
+
+        // TODO: standby horizon should use leases so we don't really need to consider it here.
+        // let watermark = watermark.min(self.standby_horizon.load());
+
+        // TODO: ensure the child branches will not use anything below the watermark, or consider
+        // them when computing the watermark.
+        gc_cutoff_lsn.min(*self.get_latest_gc_cutoff_lsn())
+    }
+
     /// Split a gc-compaction job into multiple compaction jobs. The split is based on the key range and the estimated size of the compaction job.
     /// The function returns a list of compaction jobs that can be executed separately. If the upper bound of the compact LSN
     /// range is not specified, we will use the latest gc_cutoff as the upper bound, so that all jobs in the jobset acts
@@ -1811,7 +1829,7 @@ impl Timeline {
         let compact_below_lsn = if job.compact_lsn_range.end != Lsn::MAX {
             job.compact_lsn_range.end
         } else {
-            *self.get_latest_gc_cutoff_lsn() // use the real gc cutoff
+            self.get_gc_compaction_watermark()
         };
 
         // Split compaction job to about 4GB each
@@ -2006,7 +2024,7 @@ impl Timeline {
                 // Therefore, it can only clean up data that cannot be cleaned up with legacy gc, instead of
                 // cleaning everything that theoritically it could. In the future, it should use `self.gc_info`
                 // to get the truth data.
-                let real_gc_cutoff = *self.get_latest_gc_cutoff_lsn();
+                let real_gc_cutoff = self.get_gc_compaction_watermark();
                 // The compaction algorithm will keep all keys above the gc_cutoff while keeping only necessary keys below the gc_cutoff for
                 // each of the retain_lsn. Therefore, if the user-provided `compact_lsn_range.end` is larger than the real gc cutoff, we will use
                 // the real cutoff.

pageserver/src/tenant/timeline/offload.rs

@@ -1,5 +1,7 @@
 use std::sync::Arc;
 
+use pageserver_api::models::TenantState;
+
 use super::delete::{delete_local_timeline_directory, DeleteTimelineFlow, DeletionGuard};
 use super::Timeline;
 use crate::span::debug_assert_current_span_has_tenant_and_timeline_id;
@@ -70,6 +72,15 @@ pub(crate) async fn offload_timeline(
 
     {
         let mut offloaded_timelines = tenant.timelines_offloaded.lock().unwrap();
+        if matches!(
+            tenant.current_state(),
+            TenantState::Stopping { .. } | TenantState::Broken { .. }
+        ) {
+            // Cancel the operation if the tenant is shutting down. Do this while the
+            // timelines_offloaded lock is held to prevent a race with Tenant::shutdown
+            // for defusing the lock
+            return Err(OffloadError::Cancelled);
+        }
         offloaded_timelines.insert(
             timeline.timeline_id,
             Arc::new(

pgxn/neon/libpagestore.c

@@ -680,7 +680,7 @@ call_PQgetCopyData(shardno_t shard_no, char **buffer)
 	 * but in the cases that take exceptionally long, it's useful to log the
 	 * exact timestamps.
 	 */
-#define LOG_INTERVAL_US		UINT64CONST(10 * 1000000)
+#define LOG_INTERVAL_MS		INT64CONST(10 * 1000)
 
 	INSTR_TIME_SET_CURRENT(now);
 	start_ts = last_log_ts = now;
@@ -694,7 +694,7 @@ retry:
 		WaitEvent	event;
 		long		timeout;
 
-		timeout = Min(0, LOG_INTERVAL_US - INSTR_TIME_GET_MICROSEC(since_last_log));
+		timeout = Max(0, LOG_INTERVAL_MS - INSTR_TIME_GET_MILLISEC(since_last_log));
 
 		/* Sleep until there's something to do */
 		(void) WaitEventSetWait(shard->wes_read, timeout, &event, 1,
@@ -723,7 +723,7 @@ retry:
 		INSTR_TIME_SET_CURRENT(now);
 		since_last_log = now;
 		INSTR_TIME_SUBTRACT(since_last_log, last_log_ts);
-		if (INSTR_TIME_GET_MICROSEC(since_last_log) >= LOG_INTERVAL_US)
+		if (INSTR_TIME_GET_MILLISEC(since_last_log) >= LOG_INTERVAL_MS)
 		{
 			since_start = now;
 			INSTR_TIME_SUBTRACT(since_start, start_ts);

pgxn/neon/pagestore_smgr.c

@@ -716,6 +716,8 @@ prefetch_on_ps_disconnect(void)
 		MyPState->ring_receive += 1;
 
 		prefetch_set_unused(ring_index);
+		pgBufferUsage.prefetch.expired += 1;
+		MyNeonCounters->getpage_prefetch_discards_total += 1;
 	}
 
 	/*
@@ -935,7 +937,8 @@ Retry:
 					prefetch_set_unused(ring_index);
 					entry = NULL;
 					slot = NULL;
-					MyNeonCounters->getpage_prefetch_discards_total++;
+					pgBufferUsage.prefetch.expired += 1;
+					MyNeonCounters->getpage_prefetch_discards_total += 1;
 				}
 			}
 
@@ -1026,10 +1029,14 @@ Retry:
 						if (!prefetch_wait_for(cleanup_index))
 							goto Retry;
 						prefetch_set_unused(cleanup_index);
+						pgBufferUsage.prefetch.expired += 1;
+						MyNeonCounters->getpage_prefetch_discards_total += 1;
 						break;
 					case PRFS_RECEIVED:
 					case PRFS_TAG_REMAINS:
 						prefetch_set_unused(cleanup_index);
+						pgBufferUsage.prefetch.expired += 1;
+						MyNeonCounters->getpage_prefetch_discards_total += 1;
 						break;
 					default:
 						pg_unreachable();

poetry.lock

@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand.
 
 [[package]]
 name = "aiohappyeyeballs"
@@ -239,60 +239,66 @@ files = [
 
 [[package]]
 name = "asyncpg"
-version = "0.29.0"
+version = "0.30.0"
 description = "An asyncio PostgreSQL driver"
 optional = false
 python-versions = ">=3.8.0"
 files = [
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-    {file = "asyncpg-0.29.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:52e8f8f9ff6e21f9b39ca9f8e3e33a5fcdceaf5667a8c5c32bee158e313be385"},
-    {file = "asyncpg-0.29.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a9e6823a7012be8b68301342ba33b4740e5a166f6bbda0aee32bc01638491a22"},
-    {file = "asyncpg-0.29.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:746e80d83ad5d5464cfbf94315eb6744222ab00aa4e522b704322fb182b83610"},
-    {file = "asyncpg-0.29.0-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:ff8e8109cd6a46ff852a5e6bab8b0a047d7ea42fcb7ca5ae6eaae97d8eacf397"},
-    {file = "asyncpg-0.29.0-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:97eb024685b1d7e72b1972863de527c11ff87960837919dac6e34754768098eb"},
-    {file = "asyncpg-0.29.0-cp310-cp310-win32.whl", hash = "sha256:5bbb7f2cafd8d1fa3e65431833de2642f4b2124be61a449fa064e1a08d27e449"},
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 [package.dependencies]
@@ -1114,72 +1123,103 @@ Flask = ">=0.9"
 
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+    {file = "zstandard-0.23.0-cp38-cp38-win32.whl", hash = "sha256:b8c0bd73aeac689beacd4e7667d48c299f61b959475cdbb91e7d3d88d27c56b9"},
+    {file = "zstandard-0.23.0-cp38-cp38-win_amd64.whl", hash = "sha256:a05e6d6218461eb1b4771d973728f0133b2a4613a6779995df557f70794fd60f"},
+    {file = "zstandard-0.23.0-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:3aa014d55c3af933c1315eb4bb06dd0459661cc0b15cd61077afa6489bec63bb"},
+    {file = "zstandard-0.23.0-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:0a7f0804bb3799414af278e9ad51be25edf67f78f916e08afdb983e74161b916"},
+    {file = "zstandard-0.23.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:fb2b1ecfef1e67897d336de3a0e3f52478182d6a47eda86cbd42504c5cbd009a"},
+    {file = "zstandard-0.23.0-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:837bb6764be6919963ef41235fd56a6486b132ea64afe5fafb4cb279ac44f259"},
+    {file = "zstandard-0.23.0-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:1516c8c37d3a053b01c1c15b182f3b5f5eef19ced9b930b684a73bad121addf4"},
+    {file = "zstandard-0.23.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:48ef6a43b1846f6025dde6ed9fee0c24e1149c1c25f7fb0a0585572b2f3adc58"},
+    {file = "zstandard-0.23.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:11e3bf3c924853a2d5835b24f03eeba7fc9b07d8ca499e247e06ff5676461a15"},
+    {file = "zstandard-0.23.0-cp39-cp39-musllinux_1_1_aarch64.whl", hash = "sha256:2fb4535137de7e244c230e24f9d1ec194f61721c86ebea04e1581d9d06ea1269"},
+    {file = "zstandard-0.23.0-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:8c24f21fa2af4bb9f2c492a86fe0c34e6d2c63812a839590edaf177b7398f700"},
+    {file = "zstandard-0.23.0-cp39-cp39-musllinux_1_2_aarch64.whl", hash = "sha256:a8c86881813a78a6f4508ef9daf9d4995b8ac2d147dcb1a450448941398091c9"},
+    {file = "zstandard-0.23.0-cp39-cp39-musllinux_1_2_i686.whl", hash = "sha256:fe3b385d996ee0822fd46528d9f0443b880d4d05528fd26a9119a54ec3f91c69"},
+    {file = "zstandard-0.23.0-cp39-cp39-musllinux_1_2_ppc64le.whl", hash = "sha256:82d17e94d735c99621bf8ebf9995f870a6b3e6d14543b99e201ae046dfe7de70"},
+    {file = "zstandard-0.23.0-cp39-cp39-musllinux_1_2_s390x.whl", hash = "sha256:c7c517d74bea1a6afd39aa612fa025e6b8011982a0897768a2f7c8ab4ebb78a2"},
+    {file = "zstandard-0.23.0-cp39-cp39-musllinux_1_2_x86_64.whl", hash = "sha256:1fd7e0f1cfb70eb2f95a19b472ee7ad6d9a0a992ec0ae53286870c104ca939e5"},
+    {file = "zstandard-0.23.0-cp39-cp39-win32.whl", hash = "sha256:43da0f0092281bf501f9c5f6f3b4c975a8a0ea82de49ba3f7100e64d422a1274"},
+    {file = "zstandard-0.23.0-cp39-cp39-win_amd64.whl", hash = "sha256:f8346bfa098532bc1fb6c7ef06783e969d87a99dd1d2a5a18a892c1d7a643c58"},
+    {file = "zstandard-0.23.0.tar.gz", hash = "sha256:b2d8c62d08e7255f68f7a740bae85b3c9b8e5466baa9cbf7f57f1cde0ac6bc09"},
 ]
 
 [package.dependencies]
@@ -3524,4 +3655,4 @@ cffi = ["cffi (>=1.11)"]
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.11"
-content-hash = "426c385df93f578ba3537c40a269535e27fbcca1978b3cf266096ecbc298c6a9"
+content-hash = "e6904aca09abc6c805604b21a5702a97e0056406f9ec7469b091d35ee10a6b16"

proxy/README.md

@@ -102,23 +102,39 @@ User can pass several optional headers that will affect resulting json.
 2. `Neon-Array-Mode: true`. Return postgres rows as arrays instead of objects. That is more compact representation and also helps in some edge
 cases where it is hard to use rows represented as objects (e.g. when several fields have the same name).
 
+## Test proxy locally
 
-## Using SNI-based routing on localhost
-
-Now proxy determines project name from the subdomain, request to the `round-rice-566201.somedomain.tld` will be routed to the project named `round-rice-566201`. Unfortunately, `/etc/hosts` does not support domain wildcards, so I usually use `*.localtest.me` which resolves to `127.0.0.1`. Now we can create self-signed certificate and play with proxy:
+Proxy determines project name from the subdomain, request to the `round-rice-566201.somedomain.tld` will be routed to the project named `round-rice-566201`. Unfortunately, `/etc/hosts` does not support domain wildcards, so we can use *.localtest.me` which resolves to `127.0.0.1`.
 
+Let's create self-signed certificate by running:
 ```sh
 openssl req -new -x509 -days 365 -nodes -text -out server.crt -keyout server.key -subj "/CN=*.localtest.me"
 ```
 
-start proxy
-
+Then we need to build proxy with 'testing' feature and run, e.g.:
 ```sh
-./target/debug/proxy -c server.crt -k server.key
+RUST_LOG=proxy cargo run -p proxy --bin proxy --features testing -- --auth-backend postgres --auth-endpoint 'postgresql://proxy:password@endpoint.localtest.me:5432/postgres' --is-private-access-proxy true -c server.crt -k server.key
 ```
 
-and connect to it
+We will also need to have a postgres instance. Assuming that we have setted up docker we can set it up as follows:
+```sh
+docker run \
+  --detach \
+  --name proxy-postgres \
+  --env POSTGRES_PASSWORD=proxy-postgres \
+  --publish 5432:5432 \
+  postgres:17-bookworm
+```
+
+Next step is setting up auth table and schema as well as creating role (without the JWT table):
+```sh
+docker exec -it proxy-postgres psql -U postgres -c "CREATE SCHEMA IF NOT EXISTS neon_control_plane"
+docker exec -it proxy-postgres psql -U postgres -c "CREATE TABLE neon_control_plane.endpoints (endpoint_id VARCHAR(255) PRIMARY KEY, allowed_ips VARCHAR(255))"
+docker exec -it proxy-postgres psql -U postgres -c "CREATE ROLE proxy WITH SUPERUSER LOGIN PASSWORD 'password';"
+```
+
+Now from client you can start a new session:
 
 ```sh
-PGSSLROOTCERT=./server.crt psql 'postgres://my-cluster-42.localtest.me:1234?sslmode=verify-full'
-```
+PGSSLROOTCERT=./server.crt psql  "postgresql://proxy:password@endpoint.localtest.me:4432/postgres?sslmode=verify-full"
+```

proxy/src/redis/notifications.rs

@@ -30,8 +30,14 @@ async fn try_connect(client: &ConnectionWithCredentialsProvider) -> anyhow::Resu
     Ok(conn)
 }
 
+#[derive(Debug, Deserialize)]
+struct NotificationHeader<'a> {
+    topic: &'a str,
+}
+
 #[derive(Clone, Debug, Serialize, Deserialize, Eq, PartialEq)]
 #[serde(tag = "topic", content = "data")]
+// Message to contributors: Make sure to align these topic names with the list below.
 pub(crate) enum Notification {
     #[serde(
         rename = "/allowed_ips_updated",
@@ -69,6 +75,22 @@ pub(crate) enum Notification {
     #[serde(rename = "/cancel_session")]
     Cancel(CancelSession),
 }
+
+/// Returns true if the topic name given is a known topic that we can deserialize and action on.
+/// Returns false otherwise.
+fn known_topic(s: &str) -> bool {
+    // Message to contributors: Make sure to align these topic names with the enum above.
+    matches!(
+        s,
+        "/allowed_ips_updated"
+            | "/block_public_or_vpc_access_updated"
+            | "/allowed_vpc_endpoints_updated_for_org"
+            | "/allowed_vpc_endpoints_updated_for_projects"
+            | "/password_updated"
+            | "/cancel_session"
+    )
+}
+
 #[derive(Clone, Debug, Serialize, Deserialize, Eq, PartialEq)]
 pub(crate) struct AllowedIpsUpdate {
     project_id: ProjectIdInt,
@@ -96,6 +118,7 @@ pub(crate) struct PasswordUpdate {
     project_id: ProjectIdInt,
     role_name: RoleNameInt,
 }
+
 #[derive(Clone, Debug, Serialize, Deserialize, Eq, PartialEq)]
 pub(crate) struct CancelSession {
     pub(crate) region_id: Option<String>,
@@ -141,18 +164,23 @@ impl<C: ProjectInfoCache + Send + Sync + 'static> MessageHandler<C> {
             region_id,
         }
     }
+
     pub(crate) async fn increment_active_listeners(&self) {
         self.cache.increment_active_listeners().await;
     }
+
     pub(crate) async fn decrement_active_listeners(&self) {
         self.cache.decrement_active_listeners().await;
     }
+
     #[tracing::instrument(skip(self, msg), fields(session_id = tracing::field::Empty))]
     async fn handle_message(&self, msg: redis::Msg) -> anyhow::Result<()> {
         let payload: String = msg.get_payload()?;
         tracing::debug!(?payload, "received a message payload");
 
-        let msg: Notification = match serde_json::from_str(&payload) {
+        // For better error handling, we first parse the payload to extract the topic.
+        // If there's a topic we don't support, we can handle that error more gracefully.
+        let header: NotificationHeader = match serde_json::from_str(&payload) {
             Ok(msg) => msg,
             Err(e) => {
                 Metrics::get().proxy.redis_errors_total.inc(RedisErrors {
@@ -162,6 +190,24 @@ impl<C: ProjectInfoCache + Send + Sync + 'static> MessageHandler<C> {
                 return Ok(());
             }
         };
+
+        if !known_topic(header.topic) {
+            // don't update the metric for redis errors if it's just a topic we don't know about.
+            tracing::warn!(topic = header.topic, "unknown topic");
+            return Ok(());
+        }
+
+        let msg: Notification = match serde_json::from_str(&payload) {
+            Ok(msg) => msg,
+            Err(e) => {
+                Metrics::get().proxy.redis_errors_total.inc(RedisErrors {
+                    channel: msg.get_channel_name(),
+                });
+                tracing::error!(topic = header.topic, "broken message: {e}");
+                return Ok(());
+            }
+        };
+
         tracing::debug!(?msg, "received a message");
         match msg {
             Notification::Cancel(cancel_session) => {

proxy/src/serverless/conn_pool.rs

@@ -124,6 +124,9 @@ pub(crate) fn poll_client<C: ClientInnerExt>(
                 let message = ready!(connection.poll_message(cx));
 
                 match message {
+                    Some(Ok(AsyncMessage::Notice(notice))) => {
+                        info!(%session_id, "notice: {}", notice);
+                    }
                     Some(Ok(AsyncMessage::Notification(notif))) => {
                         warn!(%session_id, pid = notif.process_id(), channel = notif.channel(), "notification received");
                     }

proxy/src/serverless/local_conn_pool.rs

@@ -227,6 +227,9 @@ pub(crate) fn poll_client<C: ClientInnerExt>(
                 let message = ready!(connection.poll_message(cx));
 
                 match message {
+                    Some(Ok(AsyncMessage::Notice(notice))) => {
+                        info!(%session_id, "notice: {}", notice);
+                    }
                     Some(Ok(AsyncMessage::Notification(notif))) => {
                         warn!(%session_id, pid = notif.process_id(), channel = notif.channel(), "notification received");
                     }

pyproject.toml

@@ -7,13 +7,13 @@ package-mode = false
 python = "^3.11"
 pytest = "^7.4.4"
 psycopg2-binary = "^2.9.10"
-typing-extensions = "^4.6.1"
+typing-extensions = "^4.12.2"
 PyJWT = {version = "^2.1.0", extras = ["crypto"]}
 requests = "^2.32.3"
 pytest-xdist = "^3.3.1"
-asyncpg = "^0.29.0"
+asyncpg = "^0.30.0"
 aiopg = "^1.4.0"
-Jinja2 = "^3.1.4"
+Jinja2 = "^3.1.5"
 types-requests = "^2.31.0.0"
 types-psycopg2 = "^2.9.21.20241019"
 boto3 = "^1.34.11"
@@ -36,7 +36,7 @@ aiohttp = "3.10.11"
 pytest-rerunfailures = "^15.0"
 types-pytest-lazy-fixture = "^0.6.3.3"
 pytest-split = "^0.8.1"
-zstandard = "^0.21.0"
+zstandard = "^0.23.0"
 httpx = {extras = ["http2"], version = "^0.26.0"}
 pytest-repeat = "^0.9.3"
 websockets = "^12.0"
@@ -47,8 +47,9 @@ h2 = "^4.1.0"
 types-jwcrypto = "^1.5.0.20240925"
 pyyaml = "^6.0.2"
 types-pyyaml = "^6.0.12.20240917"
-testcontainers = "^4.8.1"
-jsonnet = "^0.20.0"
+testcontainers = "^4.9.0"
+# Jsonnet doesn't support Python 3.13 yet
+jsonnet = { version = "^0.20.0", markers = "python_version < '3.13'" }
 
 [tool.poetry.group.dev.dependencies]
 mypy = "==1.13.0"

safekeeper/src/bin/safekeeper.rs

@@ -51,10 +51,12 @@ use utils::{
 #[global_allocator]
 static GLOBAL: tikv_jemallocator::Jemalloc = tikv_jemallocator::Jemalloc;
 
-/// Configure jemalloc to sample allocations for profiles every 1 MB (1 << 20).
-#[allow(non_upper_case_globals)]
-#[export_name = "malloc_conf"]
-pub static malloc_conf: &[u8] = b"prof:true,prof_active:true,lg_prof_sample:20\0";
+// Configure jemalloc to sample allocations for profiles every 1 MB (1 << 20).
+// TODO: disabled because concurrent CPU profiles cause seg faults. See:
+// https://github.com/neondatabase/neon/issues/10225.
+//#[allow(non_upper_case_globals)]
+//#[export_name = "malloc_conf"]
+//pub static malloc_conf: &[u8] = b"prof:true,prof_active:true,lg_prof_sample:20\0";
 
 const PID_FILE_NAME: &str = "safekeeper.pid";
 const ID_FILE_NAME: &str = "safekeeper.id";

storage_controller/Cargo.toml

@@ -43,13 +43,13 @@ scopeguard.workspace = true
 strum.workspace = true
 strum_macros.workspace = true
 
-diesel = { version = "2.1.4", features = [
+diesel = { version = "2.2.6", features = [
     "serde_json",
     "postgres",
     "r2d2",
     "chrono",
 ] }
-diesel_migrations = { version = "2.1.0" }
+diesel_migrations = { version = "2.2.0" }
 r2d2 = { version = "0.8.10" }
 
 utils = { path = "../libs/utils/" }

storage_controller/src/service.rs

@@ -3572,6 +3572,11 @@ impl Service {
                 .iter()
                 .any(|i| i.generation.is_none() || i.generation_pageserver.is_none())
             {
+                let shard_generations = generations
+                    .into_iter()
+                    .map(|i| (i.tenant_shard_id, (i.generation, i.generation_pageserver)))
+                    .collect::<HashMap<_, _>>();
+
                 // One or more shards has not been attached to a pageserver.  Check if this is because it's configured
                 // to be detached (409: caller should give up), or because it's meant to be attached but isn't yet (503: caller should retry)
                 let locked = self.inner.read().unwrap();
@@ -3582,6 +3587,28 @@ impl Service {
                         PlacementPolicy::Attached(_) => {
                             // This shard is meant to be attached: the caller is not wrong to try and
                             // use this function, but we can't service the request right now.
+                            let Some(generation) = shard_generations.get(shard_id) else {
+                                // This can only happen if there is a split brain controller modifying the database.  This should
+                                // never happen when testing, and if it happens in production we can only log the issue.
+                                debug_assert!(false);
+                                tracing::error!("Shard {shard_id} not found in generation state!  Is another rogue controller running?");
+                                continue;
+                            };
+                            let (generation, generation_pageserver) = generation;
+                            if let Some(generation) = generation {
+                                if generation_pageserver.is_none() {
+                                    // This is legitimate only in a very narrow window where the shard was only just configured into
+                                    // Attached mode after being created in Secondary or Detached mode, and it has had its generation
+                                    // set but not yet had a Reconciler run (reconciler is the only thing that sets generation_pageserver).
+                                    tracing::warn!("Shard {shard_id} generation is set ({generation:?}) but generation_pageserver is None, reconciler not run yet?");
+                                }
+                            } else {
+                                // This should never happen: a shard with no generation is only permitted when it was created in some state
+                                // other than PlacementPolicy::Attached (and generation is always written to DB before setting Attached in memory)
+                                debug_assert!(false);
+                                tracing::error!("Shard {shard_id} generation is None, but it is in PlacementPolicy::Attached mode!");
+                                continue;
+                            }
                         }
                         PlacementPolicy::Secondary | PlacementPolicy::Detached => {
                             return Err(ApiError::Conflict(format!(

test_runner/conftest.py

@@ -8,6 +8,7 @@ pytest_plugins = (
     "fixtures.compute_reconfigure",
     "fixtures.storage_controller_proxy",
     "fixtures.paths",
+    "fixtures.compute_migrations",
     "fixtures.neon_fixtures",
     "fixtures.benchmark_fixture",
     "fixtures.pg_stats",

test_runner/fixtures/compute_migrations.py

@@ -0,0 +1,34 @@
+from __future__ import annotations
+
+import os
+from typing import TYPE_CHECKING
+
+import pytest
+
+from fixtures.paths import BASE_DIR
+
+if TYPE_CHECKING:
+    from collections.abc import Iterator
+    from pathlib import Path
+
+COMPUTE_MIGRATIONS_DIR = BASE_DIR / "compute_tools" / "src" / "migrations"
+COMPUTE_MIGRATIONS_TEST_DIR = COMPUTE_MIGRATIONS_DIR / "tests"
+
+COMPUTE_MIGRATIONS = sorted(next(os.walk(COMPUTE_MIGRATIONS_DIR))[2])
+NUM_COMPUTE_MIGRATIONS = len(COMPUTE_MIGRATIONS)
+
+
+@pytest.fixture(scope="session")
+def compute_migrations_dir() -> Iterator[Path]:
+    """
+    Retrieve the path to the compute migrations directory.
+    """
+    yield COMPUTE_MIGRATIONS_DIR
+
+
+@pytest.fixture(scope="session")
+def compute_migrations_test_dir() -> Iterator[Path]:
+    """
+    Retrieve the path to the compute migrations test directory.
+    """
+    yield COMPUTE_MIGRATIONS_TEST_DIR

test_runner/fixtures/endpoint/http.py

@@ -55,3 +55,17 @@ class EndpointHttpClient(requests.Session):
         res = self.get(f"http://localhost:{self.port}/metrics")
         res.raise_for_status()
         return res.text
+
+    def configure_failpoints(self, *args: tuple[str, str]) -> None:
+        body: list[dict[str, str]] = []
+
+        for fp in args:
+            body.append(
+                {
+                    "name": fp[0],
+                    "action": fp[1],
+                }
+            )
+
+        res = self.post(f"http://localhost:{self.port}/failpoints", json=body)
+        res.raise_for_status()

test_runner/fixtures/metrics.py

@@ -170,6 +170,7 @@ PAGESERVER_PER_TENANT_METRICS: tuple[str, ...] = (
     "pageserver_evictions_with_low_residence_duration_total",
     "pageserver_aux_file_estimated_size",
     "pageserver_valid_lsn_lease_count",
+    "pageserver_flush_wait_upload_seconds",
     counter("pageserver_tenant_throttling_count_accounted_start"),
     counter("pageserver_tenant_throttling_count_accounted_finish"),
     counter("pageserver_tenant_throttling_wait_usecs_sum"),

test_runner/fixtures/neon_cli.py

@@ -522,14 +522,15 @@ class NeonLocalCli(AbstractNeonCli):
         safekeepers: list[int] | None = None,
         remote_ext_config: str | None = None,
         pageserver_id: int | None = None,
-        allow_multiple=False,
+        allow_multiple: bool = False,
         basebackup_request_tries: int | None = None,
+        env: dict[str, str] | None = None,
     ) -> subprocess.CompletedProcess[str]:
         args = [
             "endpoint",
             "start",
         ]
-        extra_env_vars = {}
+        extra_env_vars = env or {}
         if basebackup_request_tries is not None:
             extra_env_vars["NEON_COMPUTE_TESTING_BASEBACKUP_TRIES"] = str(basebackup_request_tries)
         if remote_ext_config is not None:

test_runner/fixtures/neon_fixtures.py

@@ -54,6 +54,7 @@ from fixtures.common_types import (
     TimelineArchivalState,
     TimelineId,
 )
+from fixtures.compute_migrations import NUM_COMPUTE_MIGRATIONS
 from fixtures.endpoint.http import EndpointHttpClient
 from fixtures.h2server import H2Server
 from fixtures.log_helper import log
@@ -3855,6 +3856,7 @@ class Endpoint(PgProtocol, LogUtils):
         safekeepers: list[int] | None = None,
         allow_multiple: bool = False,
         basebackup_request_tries: int | None = None,
+        env: dict[str, str] | None = None,
     ) -> Self:
         """
         Start the Postgres instance.
@@ -3875,6 +3877,7 @@ class Endpoint(PgProtocol, LogUtils):
             pageserver_id=pageserver_id,
             allow_multiple=allow_multiple,
             basebackup_request_tries=basebackup_request_tries,
+            env=env,
         )
         self._running.release(1)
         self.log_config_value("shared_buffers")
@@ -3988,14 +3991,17 @@ class Endpoint(PgProtocol, LogUtils):
             log.info("Updating compute spec to: %s", json.dumps(data_dict, indent=4))
             json.dump(data_dict, file, indent=4)
 
-    # Please note: Migrations only run if pg_skip_catalog_updates is false
-    def wait_for_migrations(self, num_migrations: int = 11):
+    def wait_for_migrations(self, wait_for: int = NUM_COMPUTE_MIGRATIONS) -> None:
+        """
+        Wait for all compute migrations to be ran. Remember that migrations only
+        run if "pg_skip_catalog_updates" is set in the compute spec to false.
+        """
         with self.cursor() as cur:
 
             def check_migrations_done():
                 cur.execute("SELECT id FROM neon_migration.migration_id")
                 migration_id: int = cur.fetchall()[0][0]
-                assert migration_id >= num_migrations
+                assert migration_id >= wait_for
 
             wait_until(check_migrations_done)
 
@@ -4600,7 +4606,8 @@ class StorageScrubber:
         ]
         args = base_args + args
 
-        log.info(f"Invoking scrubber command {args} with env: {env}")
+        log.info(f"Invoking scrubber command {args}")
+
         (output_path, stdout, status_code) = subprocess_capture(
             self.log_dir,
             args,

test_runner/fixtures/paths.py

@@ -21,8 +21,8 @@ if TYPE_CHECKING:
 
 
 BASE_DIR = Path(__file__).parents[2]
-COMPUTE_CONFIG_DIR = BASE_DIR / "compute" / "etc"
 DEFAULT_OUTPUT_DIR: str = "test_output"
+COMPUTE_CONFIG_DIR = BASE_DIR / "compute" / "etc"
 
 
 def get_test_dir(request: FixtureRequest, top_output_dir: Path, prefix: str | None = None) -> Path:

test_runner/regress/test_branching.py

@@ -19,7 +19,6 @@ from fixtures.pageserver.utils import wait_until_tenant_active
 from fixtures.utils import query_scalar
 from performance.test_perf_pgbench import get_scales_matrix
 from requests import RequestException
-from requests.exceptions import RetryError
 
 
 # Test branch creation
@@ -177,8 +176,11 @@ def test_cannot_create_endpoint_on_non_uploaded_timeline(neon_env_builder: NeonE
 
         env.neon_cli.mappings_map_branch(initial_branch, env.initial_tenant, env.initial_timeline)
 
-        with pytest.raises(RuntimeError, match="is not active, state: Loading"):
-            env.endpoints.create_start(initial_branch, tenant_id=env.initial_tenant)
+        with pytest.raises(RuntimeError, match="ERROR: Not found: Timeline"):
+            env.endpoints.create_start(
+                initial_branch, tenant_id=env.initial_tenant, basebackup_request_tries=2
+            )
+        ps_http.configure_failpoints(("before-upload-index-pausable", "off"))
     finally:
         env.pageserver.stop(immediate=True)
 
@@ -219,7 +221,10 @@ def test_cannot_branch_from_non_uploaded_branch(neon_env_builder: NeonEnvBuilder
 
         branch_id = TimelineId.generate()
 
-        with pytest.raises(RetryError, match="too many 503 error responses"):
+        with pytest.raises(
+            PageserverApiException,
+            match="Cannot branch off the timeline that's not present in pageserver",
+        ):
             ps_http.timeline_create(
                 env.pg_version,
                 env.initial_tenant,

test_runner/regress/test_compute_metrics.py

@@ -3,12 +3,11 @@ from __future__ import annotations
 import enum
 import os
 import shutil
+import sys
 from enum import StrEnum
 from pathlib import Path
 from typing import TYPE_CHECKING, cast
 
-# Docs are available at https://jsonnet.org/ref/bindings.html#python_api
-import _jsonnet
 import pytest
 import requests
 import yaml
@@ -87,6 +86,10 @@ def jsonnet_evaluate_file(
     ext_vars: str | dict[str, str] | None = None,
     tla_vars: str | dict[str, str] | None = None,
 ) -> str:
+    # Jsonnet doesn't support Python 3.13 yet
+    # Docs are available at https://jsonnet.org/ref/bindings.html#python_api
+    import _jsonnet
+
     return cast(
         "str",
         _jsonnet.evaluate_file(
@@ -121,6 +124,7 @@ class SqlExporterProcess(StrEnum):
     AUTOSCALING = "autoscaling"
 
 
+@pytest.mark.xfail(sys.version_info >= (3, 13), reason="Jsonnet doesn't support Python 3.13 yet")
 @pytest.mark.parametrize(
     "collector_name",
     ["neon_collector", "neon_collector_autoscaling"],
@@ -352,6 +356,7 @@ else:
             self.__proc.wait()
 
 
+@pytest.mark.xfail(sys.version_info >= (3, 13), reason="Jsonnet doesn't support Python 3.13 yet")
 @pytest.mark.parametrize(
     "exporter",
     [SqlExporterProcess.COMPUTE, SqlExporterProcess.AUTOSCALING],

test_runner/regress/test_compute_migrations.py

@@ -0,0 +1,90 @@
+from __future__ import annotations
+
+from pathlib import Path
+from typing import TYPE_CHECKING, cast
+
+import pytest
+from fixtures.compute_migrations import COMPUTE_MIGRATIONS, NUM_COMPUTE_MIGRATIONS
+
+if TYPE_CHECKING:
+    from fixtures.neon_fixtures import NeonEnv
+
+
+def test_compute_migrations_retry(neon_simple_env: NeonEnv, compute_migrations_dir: Path):
+    """
+    Test that compute_ctl can recover from migration failures next time it
+    starts, and that the persisted migration ID is correct in such cases.
+    """
+    env = neon_simple_env
+
+    endpoint = env.endpoints.create("main")
+    endpoint.respec(skip_pg_catalog_updates=False)
+
+    for i in range(1, NUM_COMPUTE_MIGRATIONS + 1):
+        endpoint.start(env={"FAILPOINTS": f"compute-migration=return({i})"})
+
+        # Make sure that the migrations ran
+        endpoint.wait_for_migrations(wait_for=i - 1)
+
+        # Confirm that we correctly recorded that in the
+        # neon_migration.migration_id table
+        with endpoint.cursor() as cur:
+            cur.execute("SELECT id FROM neon_migration.migration_id")
+            migration_id = cast("int", cur.fetchall()[0][0])
+            assert migration_id == i - 1
+
+        endpoint.stop()
+
+    endpoint.start()
+
+    # Now wait for the rest of the migrations
+    endpoint.wait_for_migrations()
+
+    with endpoint.cursor() as cur:
+        cur.execute("SELECT id FROM neon_migration.migration_id")
+        migration_id = cast("int", cur.fetchall()[0][0])
+        assert migration_id == NUM_COMPUTE_MIGRATIONS
+
+    for i, m in enumerate(COMPUTE_MIGRATIONS, start=1):
+        migration_query = (compute_migrations_dir / m).read_text(encoding="utf-8")
+        if not migration_query.startswith("-- SKIP"):
+            pattern = rf"Skipping migration id={i}"
+        else:
+            pattern = rf"Running migration id={i}"
+
+        endpoint.log_contains(pattern)
+
+
+@pytest.mark.parametrize(
+    "migration",
+    (pytest.param((i, m), id=str(i)) for i, m in enumerate(COMPUTE_MIGRATIONS, start=1)),
+)
+def test_compute_migrations_e2e(
+    neon_simple_env: NeonEnv,
+    compute_migrations_dir: Path,
+    compute_migrations_test_dir: Path,
+    migration: tuple[int, str],
+):
+    """
+    Test that the migrations perform as advertised.
+    """
+    env = neon_simple_env
+
+    migration_id = migration[0]
+    migration_filename = migration[1]
+
+    migration_query = (compute_migrations_dir / migration_filename).read_text(encoding="utf-8")
+    if migration_query.startswith("-- SKIP"):
+        pytest.skip("The migration is marked as SKIP")
+
+    endpoint = env.endpoints.create("main")
+    endpoint.respec(skip_pg_catalog_updates=False)
+
+    # Stop applying migrations after the one we want to test, so that we can
+    # test the state of the cluster at the given migration ID
+    endpoint.start(env={"FAILPOINTS": f"compute-migration=return({migration_id + 1})"})
+
+    endpoint.wait_for_migrations(wait_for=migration_id)
+
+    check_query = (compute_migrations_test_dir / migration_filename).read_text(encoding="utf-8")
+    endpoint.safe_psql(check_query)

test_runner/regress/test_migrations.py

@@ -1,33 +0,0 @@
-from __future__ import annotations
-
-import time
-from typing import TYPE_CHECKING
-
-if TYPE_CHECKING:
-    from fixtures.neon_fixtures import NeonEnv
-
-
-def test_migrations(neon_simple_env: NeonEnv):
-    env = neon_simple_env
-
-    endpoint = env.endpoints.create("main")
-    endpoint.respec(skip_pg_catalog_updates=False)
-    endpoint.start()
-
-    num_migrations = 11
-    endpoint.wait_for_migrations(num_migrations=num_migrations)
-
-    with endpoint.cursor() as cur:
-        cur.execute("SELECT id FROM neon_migration.migration_id")
-        migration_id = cur.fetchall()
-        assert migration_id[0][0] == num_migrations
-
-    endpoint.stop()
-    endpoint.start()
-    # We don't have a good way of knowing that the migrations code path finished executing
-    # in compute_ctl in the case that no migrations are being run
-    time.sleep(1)
-    with endpoint.cursor() as cur:
-        cur.execute("SELECT id FROM neon_migration.migration_id")
-        migration_id = cur.fetchall()
-        assert migration_id[0][0] == num_migrations

test_runner/regress/test_remote_storage.py

@@ -784,6 +784,54 @@ def test_empty_branch_remote_storage_upload_on_restart(neon_env_builder: NeonEnv
         create_thread.join()
 
 
+def test_paused_upload_stalls_checkpoint(
+    neon_env_builder: NeonEnvBuilder,
+):
+    """
+    This test checks that checkpoints block on uploads to remote storage.
+    """
+    neon_env_builder.enable_pageserver_remote_storage(RemoteStorageKind.LOCAL_FS)
+
+    env = neon_env_builder.init_start(
+        initial_tenant_conf={
+            # Set a small compaction threshold
+            "compaction_threshold": "3",
+            # Disable GC
+            "gc_period": "0s",
+            # disable PITR
+            "pitr_interval": "0s",
+        }
+    )
+
+    env.pageserver.allowed_errors.append(
+        f".*PUT.* path=/v1/tenant/{env.initial_tenant}/timeline.* request was dropped before completing"
+    )
+
+    tenant_id = env.initial_tenant
+    timeline_id = env.initial_timeline
+
+    client = env.pageserver.http_client()
+    layers_at_creation = client.layer_map_info(tenant_id, timeline_id)
+    deltas_at_creation = len(layers_at_creation.delta_layers())
+    assert (
+        deltas_at_creation == 1
+    ), "are you fixing #5863? make sure we end up with 2 deltas at the end of endpoint lifecycle"
+
+    # Make new layer uploads get stuck.
+    # Note that timeline creation waits for the initial layers to reach remote storage.
+    # So at this point, the `layers_at_creation` are in remote storage.
+    client.configure_failpoints(("before-upload-layer-pausable", "pause"))
+
+    with env.endpoints.create_start("main", tenant_id=tenant_id) as endpoint:
+        # Build two tables with some data inside
+        endpoint.safe_psql("CREATE TABLE foo AS SELECT x FROM generate_series(1, 10000) g(x)")
+        wait_for_last_flush_lsn(env, endpoint, tenant_id, timeline_id)
+
+        with pytest.raises(ReadTimeout):
+            client.timeline_checkpoint(tenant_id, timeline_id, timeout=5)
+        client.configure_failpoints(("before-upload-layer-pausable", "off"))
+
+
 def wait_upload_queue_empty(
     client: PageserverHttpClient, tenant_id: TenantId, timeline_id: TimelineId
 ):

test_runner/regress/test_storage_scrubber.py

@@ -266,7 +266,9 @@ def test_scrubber_physical_gc_ancestors(neon_env_builder: NeonEnvBuilder, shard_
     for shard in shards:
         ps = env.get_tenant_pageserver(shard)
         assert ps is not None
-        ps.http_client().timeline_compact(shard, timeline_id, force_image_layer_creation=True)
+        ps.http_client().timeline_compact(
+            shard, timeline_id, force_image_layer_creation=True, wait_until_uploaded=True
+        )
         ps.http_client().timeline_gc(shard, timeline_id, 0)
 
     # We will use a min_age_secs=1 threshold for deletion, let it pass